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LotjaGi1g1v0557300.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0557300
Transcript ID	LotjaGi1g1v0557300.2
Related isoforms 1	LotjaGi1g1v0557300.1
Lotus japonicus genome version	Gifu v1.2
Description	Histone chaperone; TAIR: AT5G38110.1 anti- silencing function 1b; Swiss-Prot: sp\|Q9LS09\|ASF1B_ARATH Histone chaperone ASF1B; TrEMBL-Plants: tr\|I3SYQ0\|I3SYQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0557300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:108958410..108959450) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTGCGGTGAACATCACGAACGTCACCGTCCTCGATAACCCCGCTTCCTTCCTCACCCCCTTTCAGTTCGAGATTTC CTATGAGTGCTTGACTTCTCTCAAAGATGGTTCGTTCCTTTATCTTCTTTCCTTTCTTTTATCGTTCTGCAAAATTAGGG TTTCATTTTTCTCCATTGCTTTCTCAATGTTTATTCTAGATAGGTTAGGGTTTCTTGTTTTCAATTCATGCCTACAGATC TTCATTGTATTAATTGTGTGTGTGTGTGTGTGTGTGTGTCTGGAAACAAACCGTGATCTGAATTTTCGTGTCAAGTTTAG GGTTTATAAGTTATTTTTCTATAAGCTTCACTGTGATTAATTAAATTCCTTGATTCATATTGCTGGTCTACTTTATCTTG TTTGGTTGTCACAATGCATGCTGTCATTTGAGTACAGATTTGGAATGGAAGCTCATTTACGTTGGATCTGCCGAGGATGA GACTTACGACCAATTGTTAGAGAGTGTCCTTGTGGGTCCTGTCAATGTTGGAAACTATCGCTTTGTTTTGCAGGCAAGCT TAATTAATCACTACTAGTATTTCGAATTCTGTTTTGTGTCTTGCGATTGCTTTTAGATTCTAACTTTTGAATCTTGTTTT GGCTGCAGGCTGATCCACCGGACCCGTCAAAGATTCGTGATGAAGATATAATTGGTGTCACCGTGCTTCTGTTGACCTGC TCTTATCTGGGTCAGGAATTTATCCGCGTCGGTTATTATGTGAACAATGATTATGATGATGAGCAGCTGAGAGAGGAACC TCCACCAAAGGTTCTAGTTGATAAGGTTCAGAGGAACATTTTATCTGACAAACCAAGGGTCACCAAGTTTCCCATCAATT TCCACCCTGAGAACAACGTAAATGAAGAGCAACCCCCTCAAAATGACGAGCAGCCCCCTCAAAATGATGAACAACCCCCT CAACCTGAGCCCTCATCTGAAGCTGAAGAAGGTCCACTTGCTTTAGTTGGTCGTGATCCCCCAAATGAGGGGGATTCTTA A

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CDS sequence (LotjaGi1g1v0557300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGCGGTGAACATCACGAACGTCACCGTCCTCGATAACCCCGCTTCCTTCCTCACCCCCTTTCAGTTCGAGATTTC CTATGAGTGCTTGACTTCTCTCAAAGATGATTTGGAATGGAAGCTCATTTACGTTGGATCTGCCGAGGATGAGACTTACG ACCAATTGTTAGAGAGTGTCCTTGTGGGTCCTGTCAATGTTGGAAACTATCGCTTTGTTTTGCAGGCTGATCCACCGGAC CCGTCAAAGATTCGTGATGAAGATATAATTGGTGTCACCGTGCTTCTGTTGACCTGCTCTTATCTGGGTCAGGAATTTAT CCGCGTCGGTTATTATGTGAACAATGATTATGATGATGAGCAGCTGAGAGAGGAACCTCCACCAAAGGTTCTAGTTGATA AGGTTCAGAGGAACATTTTATCTGACAAACCAAGGGTCACCAAGTTTCCCATCAATTTCCACCCTGAGAACAACGTAAAT GAAGAGCAACCCCCTCAAAATGACGAGCACTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0557300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSAVNITNVTVLDNPASFLTPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPD PSKIRDEDIIGVTVLLLTCSYLGQEFIRVGYYVNNDYDDEQLREEPPPKVLVDKVQRNILSDKPRVTKFPINFHPENNVN EEQPPQNDEH

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12040:SF18 View details on PTHR12040:SF18 Search for proteins/transripts with this domain View external data on PTHR12040:SF18	1	169	169	8.6E-112	–
Pfam	PF04729 View details on PF04729 Search for proteins/transripts with this domain View external data on PF04729	1	153	153	4.7E-70	IPR006818 Show description in modal box View details on IPR006818 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR12040 View details on PTHR12040 Search for proteins/transripts with this domain View external data on PTHR12040	1	169	169	8.6E-112	IPR006818 Show description in modal box View details on IPR006818 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF101546 View details on SSF101546 Search for proteins/transripts with this domain View external data on SSF101546	1	153	153	5.23E-67	IPR036747 Show description in modal box View details on IPR036747 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.60.40.1490 View details on G3DSA:2.60.40.1490 Search for proteins/transripts with this domain View external data on G3DSA:2.60.40.1490	1	169	169	2.0E-78	IPR036747 Show description in modal box View details on IPR036747 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	148	170	23	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of View details of GO:0043231
GO:0006333 View details of GO:0006333 AmiGO InterPro QuickGO	Biological process	Chromatin assembly or disassembly	The formation or destruction of chromatin structures.	Subterm of View details of GO:0006325

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0557300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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