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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0560800 |
| Transcript ID | LotjaGi1g1v0560800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein COBRA, putative; TAIR: AT3G29810.1 COBRA-like protein 2 precursor; Swiss-Prot: sp|Q8L8Q7|COBL2_ARATH COBRA-like protein 2; TrEMBL-Plants: tr|G7J7U8|G7J7U8_MEDTR COBRA-like protein 2; Found in the gene: LotjaGi1g1v0560800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109291205..109293642) extracted from Lotus japonicus Gifu genome v1.2.
TACAGAAAATGGATATCTGGTCAGTACAGTGTCACACTCTAAAACGGCAATTTGATTTGTATTAAATTGCTCTCACAATT CCGATCTAGCTAAGTGTCGTGGAGGCCAAATGTCCCCTAAGTGCGTCTCCTAATAACACAGTTTGATATTTGAACCACAT ATTTAAGCGCAGCTTCACAATTATAATCAACAAAGTAATAAGAAAACTTACCCTTTGGTCTACATCAGATGTTTCTTTAC TTGAAAAAAGAACAATACTATAATAACAAATGATTGGGGAAATAATTGATTGAGTTATATGGTTTTGAATCCAAAACATA GCTAGAATGTACCTTGAAGCCTTGAATGTGTTTCTACAGGCAAAGGTGATTCTTCAAAACAATTATCTATATCGCCATGT AGATAAACCTGGCTGGAAACTAGGATGGACATGGGCTAATAGTGAAGTGATCTGGTCAATGAGTGGTGCCATTGCAACTG ATAGAGGGAGCTGCGCAAATTACAGAGGCTCTCAGATGCCGCATTCATGCAAGAAAGATCCCATCATTGTTGATCTCGGT TCAGATGTATCGCAAAACCGGTCAGAGCATTGCTGTGGTGGTGGCATCCTCTCTGCTTTGGTTGTGGATCCTTTGAATTC TTTCACTTCATTTGAACTTGAAGTAAGAAACTTGGGGAACAACCCACTTGGACAAGCACCTAATAATGTTACATTAATGG CCCCTGGTCCTGGTTACTCTTGTAGCCCATTTCATGATACAGAACCCTCAGTATCCTTGGATTCTGGGGGACTAAGACAA GTTCCTGTTCTCAGTAAGTTCTATAAGACTCTTCTCATGTTTTGTTCCACCGTGAAATGCTCTAGAATAACTTCTAATTA GAGCTACTCGTCTTAACTTATAAGTAAACGTGCACTGAATTATGTGCAAATCGTAAAACCAGACCACATAGTTCTGCTAT TCTTAATTCTTATGTTATCAGAATGCATATTAAGAAATTGTTTATAAAACATAGAAAGTAAGAAAATGACAATTGCTTTC CCTTCTTTTTAATCCTAATTATTTAACAGGATACATTTTGCATTCCAGGAACTTGGAAGTCAACATGTGCATACTCCAGT TTCTTAGCAAACCCATCACCAATGTGCTGTGTTTCCTTCTCAACATTTTACAATCCTATAGTCACATCATGCAACAATTG CAGTTGTGGATGCAAAGAAGCAGATAAAAGCACAAAGTCTTGCATAAGGTTTGTTTCAATTGTCCAAATTTGTTTCACCT GTTGCTGCTGTTATTGTTGAGGCCCTTCTGTTAGGTCTAGTTTGTGCTCACTCTTTAAATCTTTGCTTGCTTATAATACA ATAACCAGGCCTGGTGATCTCTTACCAAGTTCAAATGAGGAAAATATAATGAAGTGCACAGATCATATGTGCCCCATTCG AGTTCATTGGCATTTCAAAAACAACTATATGGATCAGTGGAGGGTGAAGCTTACAATTTCTAACTACCACTTTAAGAGAA AGTACTCAAATTGGAATGTACTGGTTCAGCATCCTGGTTTAAGCCAAAAAGCAACAACTTACAGCTTCAACAGCACTAAA CTTCCGACAGCGGGGCTCCAAGGTACTTTCTTACTGCAAACCACAATCATATCATGTTTGGTTCCACGGTGAAATGTTTA ATCACTTCTGGTCAGAAGCTACAAGTATTCGCGTATGAGTAAATGTGATTGAATTCTATGCAAATCGTGAAATCAAATAT CCACTAAATTTGTTAGAATTTGAGCTTTTTATATGATGATTACCTTACTATGAACTAAATTTCAAATTTCAGCGGTATAT TTGAAAAATATACTCTTAGCTGAGAAACTTTCCATTACATTGATGAACTTGTTTTGTAGACTAATGAAGAGATAAATTTG TGGCAGATGGAGTTGCCCTTTTTTGGGGGATAGATTTTTACAACAATGAGCTATCGCACTCTGATAAGGATCAAGTGGGG TTTGTGACAACAGAAATACTATTGGAAAAAGATCCAAACTCTTTCACATTACATAACGGATGGGCATTCCCTAGAAGAAT ATACTTCAACGGTGACAACTGTGAAATGCCATTACCTGACACATTCCCCATGTTACCAAACGGCAGCTCCAGTTTAAGAC ATGCTGCTAACTACGGTTCTAATCTTCTATTGATTTCTTTGTTTTTTGTTCTAGTGTTCCTTCGGTTTTGAACACTGACT AGCTACTTAGTTCTTAGCATCTTTCTTAATTTTGAAGGACCAATTGAATTTCTCCGTAATGTATTTTTTTATGCATTAAT TGGAAATTGTAGATGTATTTGTTTGTTAGGAATAATTTCCCTATAATTTCAATGTACTATACAATACAATACATCCAAAT TCATTGTGAGGTGTTTGGAACCAGTTATTGACTTATTG
CDS sequence (LotjaGi1g1v0560800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGGTGCCATTGCAACTGATAGAGGGAGCTGCGCAAATTACAGAGGCTCTCAGATGCCGCATTCATGCAAGAAAGA TCCCATCATTGTTGATCTCGGTTCAGATGTATCGCAAAACCGGTCAGAGCATTGCTGTGGTGGTGGCATCCTCTCTGCTT TGGTTGTGGATCCTTTGAATTCTTTCACTTCATTTGAACTTGAAGTAAGAAACTTGGGGAACAACCCACTTGGACAAGCA CCTAATAATGTTACATTAATGGCCCCTGGTCCTGGTTACTCTTGTAGCCCATTTCATGATACAGAACCCTCAGTATCCTT GGATTCTGGGGGACTAAGACAAGTTCCTGTTCTCAGAACTTGGAAGTCAACATGTGCATACTCCAGTTTCTTAGCAAACC CATCACCAATGTGCTGTGTTTCCTTCTCAACATTTTACAATCCTATAGTCACATCATGCAACAATTGCAGTTGTGGATGC AAAGAAGCAGATAAAAGCACAAAGTCTTGCATAAGGCCTGGTGATCTCTTACCAAGTTCAAATGAGGAAAATATAATGAA GTGCACAGATCATATGTGCCCCATTCGAGTTCATTGGCATTTCAAAAACAACTATATGGATCAGTGGAGGGTGAAGCTTA CAATTTCTAACTACCACTTTAAGAGAAAGTACTCAAATTGGAATGTACTGGTTCAGCATCCTGGTTTAAGCCAAAAAGCA ACAACTTACAGCTTCAACAGCACTAAACTTCCGACAGCGGGGCTCCAAGATGGAGTTGCCCTTTTTTGGGGGATAGATTT TTACAACAATGAGCTATCGCACTCTGATAAGGATCAAGTGGGGTTTGTGACAACAGAAATACTATTGGAAAAAGATCCAA ACTCTTTCACATTACATAACGGATGGGCATTCCCTAGAAGAATATACTTCAACGGTGACAACTGTGAAATGCCATTACCT GACACATTCCCCATGTTACCAAACGGCAGCTCCAGTTTAAGACATGCTGCTAACTACGGTTCTAATCTTCTATTGATTTC TTTGTTTTTTGTTCTAGTGTTCCTTCGGTTTTGA
Protein sequence (LotjaGi1g1v0560800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAIATDRGSCANYRGSQMPHSCKKDPIIVDLGSDVSQNRSEHCCGGGILSALVVDPLNSFTSFELEVRNLGNNPLGQA PNNVTLMAPGPGYSCSPFHDTEPSVSLDSGGLRQVPVLRTWKSTCAYSSFLANPSPMCCVSFSTFYNPIVTSCNNCSCGC KEADKSTKSCIRPGDLLPSSNEENIMKCTDHMCPIRVHWHFKNNYMDQWRVKLTISNYHFKRKYSNWNVLVQHPGLSQKA TTYSFNSTKLPTAGLQDGVALFWGIDFYNNELSHSDKDQVGFVTTEILLEKDPNSFTLHNGWAFPRRIYFNGDNCEMPLP DTFPMLPNGSSSLRHAANYGSNLLLISLFFVLVFLRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 335 | 335 | - | – | |
| PANTHER | 1 | 353 | 353 | 3.9E-176 | – | |
| PIRSF | 1 | 356 | 356 | 1.5E-113 | ||
| Pfam | 1 | 128 | 128 | 1.5E-29 | ||
| PANTHER | 1 | 353 | 353 | 3.9E-176 | ||
| TMHMM | 333 | 355 | 23 | - | – | |
| Phobius | 336 | 355 | 20 | - | – | |
| Phobius | 356 | 357 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellulose microfibril organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. | ||
| Cellular component | Anchored component of membrane | The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping. |
Expression pattern of LotjaGi1g1v0560800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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