Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0560900 |
| Transcript ID | LotjaGi1g1v0560900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding EF-hand protein; TAIR: AT4G38810.2 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q5XHA0|SCMC1_XENTR Calcium-binding mitochondrial carrier protein SCaMC-1; TrEMBL-Plants: tr|K7KHF8|K7KHF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0560900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109295386..109300400) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGCTTTGTAGTGGAACAGGTTACTTTTACAGTTTACTCATCATCAGCTGAAACAAGCAAACGTACGTTTTTGTAGC ACGTGTAGTGTCTGGCCTTTTTCTCCAGCTATGCTATGCTGCTATATAAGCTTTCTTTGAAGGCCGCGTGTGGGGTTCAC ACTACACACAATTGCTGACCAAATTTAATAACTTTCCTCCTCCTCTTGCTTTTTCTTTCTTTCTTGATAAATTTAGGCCA GAGAAACAATACACAACAAACAGTCTTGTTGTTGGATTTGAGAGTAAACCACAAGCACTCACTCAAGTTGCAAACCAAAA CCCTGTGAGTCTGTCACGAGCCAAAAGTGAAAGGAGCTCACAAGAAAAAGCACACAAGTTGAAGAAGATTATATAGGAAG CAGAGAGAGAATGGAGAGTGGTTCAGGCAACCCCAAGAGAAAAAGTGGTGAGGTTCTGGATGGTTCCAACATTATGGAGT TGGTTGGGAACGAGCAAGTGTTCAACAATTTTGTGGACCATAAGTTTCATCAGCTCGATAAGGACAAAGACGGCAAACTC TCTGTGAAGGAGCTCGAACCTGCTGTTGCTGATATCGGTGCTGCTCTTGGTTTGCCTGCTCAGGGCACTAGTCCTGATTC TGATCACATCTATTATGAGGTACTTTTTGGTTTTCTTCTTGTTTGGTAATCTGTGTTTCAGTTTTTCTCTTCCCTCTTGA GTGTCCTGGTAGTTTTTTCTCTTAATTCATAACATTTTGTATCAGCTTCTATTTTCTCCTAATCAATTCTGAAATTCAGA ATCAGAATTTATTGTGGCTGTAGAATTAGTTATTTAAGTTTTTCCAAACATGCACTAAGCTATTGTTCTAAAAATAGCTT GGAATCTTAGCAATGTTATCTGGTGTGGACTGTGGTGGAGGTGCGGGTAGGGTGGGGGTTAAAAAGGGCAAACCTGGAGC TATGCGCGAGGTCCAGGGAGGGGGCTGAGCCACATAAGTTGTGTTTAGGCAATCTTACCTTGTATTTTTGCAAGAGGCTG ATTACACGACTCGGAACCCTGTTACTTTATTTGAAAGAAATTACTAATGAATTAAGAAGGTCTTTGTCAATTGTTTATAC TTCTCACTTAGAAAAGAAGTGATACACGCAAATTGGTTGCTACAAGAGTCAAACCGACTTGCTATTGAGGTTGATATAAT TGTAAGGTGTTACATATGCTTTTGACTTTTGCTTTGGCTTAAGTTTTGGCAGTACTCTGGACTCTGTTATTTTAATTCTT TTCAATCATGTCTTTGGAGAAATAGTTAGCTTGTTATCTATGAAATATCATCATCATCCGATTTTTGGGTTCCCATGCCA GTTGGTTTTCATTTGTTAAAGTATTTGTTCCTCTGAGTTTTTATTTAAGCTTAGTTTGGCGTGGGAAAGCACCTGTCTAT CTTTGGTTGGCATGGGAAAGCACTTTACTTTTTTTATGTGTGGTCCATTTGCATTTTAGATATACACATGCTTATTGCTT CAGATGTTGATGAAACAGCAGTCTGAACTTGGAATAAAAAATCTCGAATGATAATATGTTTCTGTAAATTAGTGTTAATG TAATACTTTCTAGAACAAGTTTGCAATATTTTGACTTCTAGCTGGCCCCAGAAGTATCCTATCCATGATAACTTGGTCGG TCCAGTGGGAATATGCTTTTTTATTGCAATCAATTGCTTCTCTATTTTGCTTTGTATTGCCACTTCTCAACCTCCATGGA GCCAGAATGGTGTCGTATATGATGGAAACCGTGTCAAGCTAATTTGTTTAACCTCTAATATATGCTAAACTATTATTGAC GGCTGATGCTGCTTGATCTTTAAACCATTGCTTGATTCAGACCCTGCTACTAAAAAATTGGAAAATATAGTTTAGACTAC TACACTTTAGAGTAACAAAAAGTTGGTATGCTATTATTGTTAATGATGAATTCCAGGGACCCAAACTACTAGTGCTAGCT GCAAGCAATCTGAGGTTAGTAGTGATTGTGTGGAAAAGTAAAGGTTTTCTTTTCATGGCATACTTTGGAAAGAAGTAAAT CTCTTACCTAACCATATGCCGAAGATGGGCAAACAATACACACACACACACACAGAGTGGGTGGATACACCACTACAAAA ATTGGACCAGCAAAAAATTATCCGGTGGGCTGCGATTTTTGCTTTGAGCCCAAACTTTGTTAGTACTTATGTTCATTTTC TGTTTGCCAGATCAATACGTATTCTTGTCTTGGAGTATTGTCGGGTGAACCAAATTTGATTTTGTTTGTGAAAATGTATA CTGTTTCCTGTAAGATTAATTATATTTGTCTGAAGTAGAGTTATTTCGCCATTGTATTTTGAATACTGTCCTCAAGTTCC TACTATAATTTCTACTTGTCCTATCATTCTATCAAAATTTTTATACATTAATCTGCACCAATAATGCTACGAGACTTGTT CTATGTACAGGTCTTGAATGAATTCACCCATGGAAAGCAAGAAAAAGTGAGCAAAACTGAATTTAAAGAGGTTCTTTCAG ACATTTTATTGGGTATGGCTGCTGGACTGAAGCGAGACCCCATTGTTATACTCCGCATGGATGGAGAAGATCTCCTTGAG TTTGTTGATGGTCCAAGTTATGAACCAGAAATGGTATCCTTGTTCTCTGAGATTGATAACCCTACTGAATCACTTCGTGA ACATATAATTAAAGCTCTTAAGAGACTCGCTGTTGATCGAGGAGTTCCTCCTACTTCAGATTCTTGGGTAATCGATTAAT GCAACTGATGTTGTCTATACCTATTTAAGTTCTTGTTTCTTAAAATAGAATTTTACGTGATCAAAACATGATTAAAGTAA AATTTCAAATGGGAACCTCATTTTCCCATTTAAGGTCAACCTTCTTTCATTTCCTTGTTGGGTTATGTTTTTCAGGTTTT TAACAACATTGTGGATCCGGCACTGGTGTCTCAAGCAGGGCCTGCTTGGGATAAGCCTGTCACTCAGGAGACATTTTTGG AAGAATTCAAGAAAGTGGCATTGAGTGTGGTTAATTGTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACC TTTGATGGAAGTGGCGTCAAGAGACTTTTATCAAACAAGTTTGAATTAGACAAGGTTTTCATGCCCACCCCCCACCCCCC CCCCCCCCTTCTTTTACTGTGATTCATAAGGAATATCTTTCTTGTTTCAAATTGACTTTGTTAAAATCCTTATGTGGAGT TTTCTAATCTATCGTGTGATGCAGACACTGAACTCAGCTTTAGAGAATCTGCCAAAAGATCGAAATGGAAAATTATCAAA GGACTATTTGCGTGTGGCACTGGATGTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTGGTGCAATTGAAGAGGTACGTT GCCAATGCTTATAGTGTTAGCATTTATAATCCTTGAGATGAAAGCTAAAAAATCACTGTTAGCATGCGTCATTGCTACAG CTAGTGTTCATAATGTTCTTCGGATTATACCAATATGGCATGAGATGTCTTAATGTTTATGCTTTATCTTATCCTTTGTC TCGCTGAGCCGATGATTGAAGACCCGTGTGTTTGATTTTGCAGATGGATAAGGTTATTAGTGAAGCCTGTAAGATGGTGA ATGCCGATGATACGAAGACGGTTAAAGAAGACGAATTCAAGAAAGTTTTAACTGAAATTCTGGGGAGTATCATGCTGCAG TTAGGGGGAAATCCCATATCTGTTAATTCAAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTTCACTTTTGCAGCC ATCTAGTGAAACAGCATGACTCTGGTAAAAAAACTAATGATATTAAAAAATGTTATTTATGTAAATTGTTAATTACTAGC ACAATATATGCTCTGAGAAGTCAATTCCTATGATGTGGGAGTGTGGGAAAATTAAATTGTCAATTAGCCCTTGTTGTCAC TTCTGTTGTAATGTAGGGTGATGGGTTGTAGGCCTTTGACGGCAACATGAACAGAGAAAGACTTGATATAATAATATAGC ATGCCCTTTTTAAATCATTCATTGTCTTTGAATATGTAATGTACCACAAGTTCGACGATTGTTCAATGTTGAATGACAGG AGTGCATGTTTGGAAACTTTTCTGCGATTGATTTTGAAGTCAGAATCAATCAATTATAGGGAGAAGTTTATGTGAGTAGT TTCTGGCTTTTTCAGATTGATCATGATGAAAGAGAAGCACATTAGGATTAGTTGCAATTGCAAATAAACATTGACCGCTA GCATGCATGATGTTTTCATAATTTCATGGACCTTTTGTTGTGTTTGTATGAAATTACAGTGACTAATAGTGTGGGACAAA AAAAGTTGAAGATGATATACAAAGACCAAAAACATGCATTTCTTATGTGGGTCATTGACAATTCTTTCGAGTTTCATTCT TGCCGCAGGTACTCACTCCCCAAGTGAGATGCTTAACGCGTTAGCGGCAACATTGCTCGAGTTTATACGCACTGCGCCTA GTATTTATCTTTTATGGCTAGGACTACTGGGTATCTAATCATCTTCGGTCCTCTAGCTTGATCATATAGCTGTAGCTAGG TGTTATAGTTGCCTTAGCTTGTATGATGAACTCCAAGGCACCGATGGAAGCAAGGTGTTTTCTTCAGAAAGTTATAGTTG TCCTGAACGGTTGGATGGTGTGGCTTAGTACAAATCTACATGCATGGATAAGTTTTGTACACAAATTAAGGAACATATAT ATGTCCTTGGATACCCTTGTCTCATGATAGATATGCATCTGTGGACGAACATTTCAAGTGTATGCATGCTCAAAACAAGA TTTGGTAATAATATTTTGTGTTTTGTATTTGGTAATTAAGAAATCAAAACCAGAGTTACTTGTTTTATGTTTGCCACTTA TTAGACACAACATTGTATTCAATTGCAACATATCCATATTTTATTTTAAATTTAT
CDS sequence (LotjaGi1g1v0560900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGTGGTTCAGGCAACCCCAAGAGAAAAAGTGGTGAGGTTCTGGATGGTTCCAACATTATGGAGTTGGTTGGGAA CGAGCAAGTGTTCAACAATTTTGTGGACCATAAGTTTCATCAGCTCGATAAGGACAAAGACGGCAAACTCTCTGTGAAGG AGCTCGAACCTGCTGTTGCTGATATCGGTGCTGCTCTTGGTTTGCCTGCTCAGGGCACTAGTCCTGATTCTGATCACATC TATTATGAGGTCTTGAATGAATTCACCCATGGAAAGCAAGAAAAAGTGAGCAAAACTGAATTTAAAGAGGTTCTTTCAGA CATTTTATTGGGTATGGCTGCTGGACTGAAGCGAGACCCCATTGTTATACTCCGCATGGATGGAGAAGATCTCCTTGAGT TTGTTGATGGTCCAAGTTATGAACCAGAAATGGTATCCTTGTTCTCTGAGATTGATAACCCTACTGAATCACTTCGTGAA CATATAATTAAAGCTCTTAAGAGACTCGCTGTTGATCGAGGAGTTCCTCCTACTTCAGATTCTTGGGTTTTTAACAACAT TGTGGATCCGGCACTGGTGTCTCAAGCAGGGCCTGCTTGGGATAAGCCTGTCACTCAGGAGACATTTTTGGAAGAATTCA AGAAAGTGGCATTGAGTGTGGTTAATTGTCTTAAAGAGAAACCTGTCATTGTTGCCCACAGTGAAAACACCTTTGATGGA AGTGGCGTCAAGAGACTTTTATCAAACAAGTTTGAATTAGACAAGACACTGAACTCAGCTTTAGAGAATCTGCCAAAAGA TCGAAATGGAAAATTATCAAAGGACTATTTGCGTGTGGCACTGGATGTGGTGTCTCCATCTGCTGGTTTACCTCCAGTTG GTGCAATTGAAGAGATGGATAAGGTTATTAGTGAAGCCTGTAAGATGGTGAATGCCGATGATACGAAGACGGTTAAAGAA GACGAATTCAAGAAAGTTTTAACTGAAATTCTGGGGAGTATCATGCTGCAGTTAGGGGGAAATCCCATATCTGTTAATTC AAATTCAGTTGTGCATGAGCCTTTAGGCTCATCTTCTTCACTTTTGCAGCCATCTAGTGAAACAGCATGA
Protein sequence (LotjaGi1g1v0560900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESGSGNPKRKSGEVLDGSNIMELVGNEQVFNNFVDHKFHQLDKDKDGKLSVKELEPAVADIGAALGLPAQGTSPDSDHI YYEVLNEFTHGKQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGEDLLEFVDGPSYEPEMVSLFSEIDNPTESLRE HIIKALKRLAVDRGVPPTSDSWVFNNIVDPALVSQAGPAWDKPVTQETFLEEFKKVALSVVNCLKEKPVIVAHSENTFDG SGVKRLLSNKFELDKTLNSALENLPKDRNGKLSKDYLRVALDVVSPSAGLPPVGAIEEMDKVISEACKMVNADDTKTVKE DEFKKVLTEILGSIMLQLGGNPISVNSNSVVHEPLGSSSSLLQPSSETA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 367 | 357 | 1.4E-207 | – | |
| PANTHER | 11 | 367 | 357 | 1.4E-207 | – | |
| ProSiteProfiles | 30 | 65 | 36 | 10.887 | ||
| SMART | 34 | 62 | 29 | 2.1 | ||
| Pfam | 37 | 104 | 68 | 7.2E-8 | ||
| SUPERFAMILY | 38 | 341 | 304 | 4.02E-15 | ||
| ProSitePatterns | 43 | 55 | 13 | - | ||
| ProSiteProfiles | 76 | 111 | 36 | 5.42 | ||
| ProSiteProfiles | 252 | 287 | 36 | 7.819 | ||
| SMART | 256 | 284 | 29 | 30.0 | ||
| ProSiteProfiles | 298 | 333 | 36 | 7.093 | ||
| SMART | 302 | 330 | 29 | 14.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0560900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…