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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0563700 |
| Transcript ID | LotjaGi1g1v0563700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Coiled-coil domain-containing 90B, mitochondrial; TAIR: AT2G16460.1 coiled-coil 90B-like protein (DUF1640); Swiss-Prot: sp|O14042|FMP32_SCHPO Protein fmp32, mitochondrial; TrEMBL-Plants: tr|V7ARH1|V7ARH1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0563700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109675507..109681201) extracted from Lotus japonicus Gifu genome v1.2.
GGGGCAAGCAAAACCAGATATTAGAAGAAAGCTTCGAATCGAAACCTCTCCAAAACCCCGTGGCTGCGGGTTTTCTTCAC TCTCCTTCAATCCTGTCTTTCCCGCTTTTGCTGTTTGTTTCAGACTTTGAGCTTCGTTTAATGGCGCTGTTGAATCGCGT TTGTCGTCTGAGTCCCAATCACCGCCACCTCTGCTTCGCCAAGTGCCACGACATCGTTTCTTCCATTCCTTCCACCACCA CGCATCGTATCAGCAGCGTTTCCCATGCCGTGGCTTCCACCGGAAAGCGCGCGTTCCTCGTTGATACACTTGGCCTGGTA AATTTCTTGTGACTTGATCACTTCAATTGTGTTGCTTTCGTTGTTTGGATGCTGAGATGGGTGTATTCAATTTCATTTCC CCAGGTTAGGGGTTTAGAGGCAAATGGGGTGCCGCCTAAACAGGCTGAAGCGATAACTTCTGCCATCACTGAAGTTCTCA ATGATAGCTTGGAAAATGTAGCTCATTCTTTTGTTACAAAATCAGAATTGCAAAAGGTGAGTGTTTTTTTTTTTTCTCAT TCCTGTCTATGTTCCCTGAATTAAATTATTGTTTGATTGAATTATGCAGTTAGTTGTGTTTTCTTTTGGAATTTTGTAGT CAGAGATGCTCCAAGAATCAAATCTGTCAAAGTTCAAATCTGAAGTGCAAAGTTCTCAGGTATCTTATATTTTCATGGTC TTTGATTGATTTTGGTTCGGGTAAATACAAGGCTTGCGCTTTAGCAAAACAGCAGCTGAGATTTTAACCATTTCAAAGAT TTTATACATTTGTTGTATTTTGTCACGATTTTCAACTGCAAATTTGTCATCAACACTTTAACTCTACACTGCACCATTTA AAGTACACCTTCTGCTTCAGGGAACCAAATCCATCTTTGATTAGCTGTAGATATTATGGAATTCATACAATGATACAACT GCTAAAGAAATTGGCTTATCCTATGGAAAATATTGATAATGAGAACAACTAAAGTGATATCAAATATGAGAATGTTATGT CATGGATGACCGGTTACATCAAACTAGATAAGATTATAAATACAACCATAAGAGAAAGTGGTTAGGTTAGCTCCCATTGT AGACTCCCATTGTAGAGAGGATAGTAGAGTCTCAACTTAAGTGGTCTAGGCATGTGTGGGGAAGGCTCATAAAACCACTA TTAAAGGGAATGGAGGATAGTCCAATAGTTAGAGGTAGACAGAGGCCAAAGACAACTATAGGGAAAACTATGAAGAGATA TGTAGAGGTAAATAGTCTAGTTCTTGAATTTAAAAGGCATTTTGCATTGTTTTATACATGTAGGCAACCCCTCCAAATGG GAAAAGACTTGGTTGTTGTTATTGAACATTCAACAGCTTTTGTAATTGGATTATCAGAGTTCTTGAGTGATGGTACATTT TGAGAGTTTTTGTTTTAGTATCTTTCAAAGAGAAGGTTTAGGATCAAGGATTGGACACTAAGGTTCAGCATATTATGTAG ACAACTAAAATTGTCAAAGTGTGGGAAGATTAATCAAGAACTCTTCTGTATGACTATTTATAATAGGATATTGAAAAGCA AATGCCTAGGCAATAAAGTGTGAAGTATTGTGAAGCACTTAGGAAACTCCTAAGGTTAAGCACCCACCATTGCCGCATTA TGTTTTTTCATGGACCTCTCTTTGCTTTGTTTCTTTTGTTAAATATATTGACTAAATAAACCATATAGTAATGGACCCTG TCAAAAGTTTTCATCAGTGTATCAAGTACGTGGCAATAGGACACGTTTTCTTTCTCCCCCTCCCCCCTTTCTACCTTCGA GTTTAGTCTGCATTGTCCGTCCCCTTCGAGATTTGTCCTGAAGATCTACAAATATAATTTTTTTATTTGTGCCCTTTAAA CCACTTATTGCAAGTTTAAAATCTGAAAGATCCCTTTCAGCTTAGTTTTACTTTTATTACATTCCTGCAGTTAAAGTTTT TCAATTAAATCCTTTCCATCCAAAATATTGTACAATTGTGTCAACAAAATGAGGCTCTTATTTATGTACATGACATGTTT CTTTGAACTCTGTTGTGGTTACAATCTTCAAATCTACCAACCAAAGAATGAATGTAATATTGAAAATAACTACGGAGAGT GTAAAATGTTGCTCTGCAGTGCATTCGGTGTTAAAAAAAATGTTGGTTTATCATCATCGTGATGTGCCCCCAATTGTGGT TTAAACTTTAGGCTGTGCTCTGTAATATCATGTTGATGTGAAATCTCTCTTTCATTTGTTTTTTTGCATGCGTTAGGATG GGTTTATTCATACAGATCAAATAGGCTATGGGAGTTGATCAATTATGTAGGGAGGAGCGTAGATTCCATTACAAGGGTTA TGTGTAGACTTCGTTGTAACTTAGATGTAGTAGGAAATTCGAGGAATCGTATTGGTTTGGCCTGAGATTAGCTTCCCCAG AAGTATCTCTTACAGTGGTTTTAAATTTTGAACTGCTTCTGCCAATGGAATTTAGAATCTCTGGTTCTTGTTTCATGAAT ATCAGGCTTCTCAATTCAGAGGCAATGCCTTGAGTTCTTTTTTGGTATTGATTTATTTGATGTCATTTCTGTATTTCTGT GCACATTAGTCAATGTGTGGCCTTATCTTAAAAACTAGGCATATTCTGTCCAAATAAATATATAAATGATCGTTCACAAA AAATAAAAAATAAAAAATAAAAAATAAATAAATGATGCCTGGGCATGATAATGAACTTTTGGCTGTAGAGTTATGTATGC TATTTTTGCGAAAATGGGACATTGTAATTGTTAAAAGTTATTGCTCCACCAATCCATTCAGGTCATCCTTATTGCTGATT GGTGACGCAGGAGCATCATTTTTCTTTGTTACAAGGCCAGACACAAAAGCTTCATAATGACATAGAGAAGATGAGAACTG AATTAAGGTCTGCATATTGGAGTACTATACACATATTTTTCCACCTGAAGCAAATTTGATTTCTGCTCCCTAAGATTGTA TTATATTGTCTGTATTGGTTGTCTGTAACAGGCATGAGATTGACAAAGTCACTGCAGGGCAACGTTTGGACTTGAATCTT GAAAGAGCGTAAGTGAAAACATTGTTCTATTTTGTGGCCCTCTTGACATAGTAATCTTTAGTTTGTTTAACCTAATGTTA TTGTCTCATTTATTTATCTTTAAAATCTAAACACAGACGCATACGGGATGAGCTTGCTAATCAAAATGCTGAAACCACCG CGCTGACAAACAAACTTGATCGGGTGAGTTTATGACTGCTCTTCAGTTGTTATTGGAGAATTTTCAGTTTGGATTGAAAT TTTGATCTGGTATATTGCTTTCAGGAAATCCATGCATTAAGAGCCCAGTTAGAAGCTGCAAAGTATGATGTGATCAAATA CTGCATAGGTACCCTTGTCTCCATATCTGCAGTGGGTCTCGCTGTAATCCGTATCATATTGTAGTTGTCTTCCATGAATT AAAGGTGAAGGTCTTGGTTTACTTCTTCTATTGACATTTTGGAAATGGTAGGAGCATCATTGTTTTCCATTAGACCTGTA ATATTTTTTGGGTTAATTTCACAGAATTACCCTCGACTTCATATGTAGATACCCCCCTTCATAGAAACGTCAAAATTGTT TGAATTCTATAGTTGGATTGAATTGCACCAATTTAAAGCTAAATTGAGTTGTTACTCGTTAATCGGAAGATTCATGGAAT AAATTGATACATTATTATCAGTGTAATGTTAGAGGATGACCATGGTATCTTCCATTCTTATTTTCTAGATTCTGATTCTG CCTTGATTATTAAATTGTATAGTCCGAACCAAAGGGATGCATAACCATAGACTCCTTTGGGGAAAAAAAAAACCAACGTA CATACCCTCAGATGCCTGATTTATCTAAAGCAATTGGCTGATAGATCTTAGCACCAGAAACTGGACTCTAGTGTGGACAA AGTCAGGTCCTTTTCTGATAAGAATGGTTTTCATTGCAATTGCCAAGTGGTTCCCCCAAAGAAAAAGACTCTGTTCTTTA GAAGAACAGATTAAGATAAGTAGTGGCTTCTTTCTGCTGCTTTAAATGCTCTGTCTTAGCCACCCTTTATGACATATCAA AAAAATGAACCTTTTTTTATTGGAAAAGAAGTGGCTTCTTCCCCCCTGCTTTAAACATTTTGTCTTCTTCACGTTCATTT TTCTCCTTTTATTTCTGCTTTTGTTTTCTTAGTGGGATAAGGCTTTGTTGTTGTTGTTGTTTTGTTGTTGTATTTCTGCT TGTGTTTTAGTTTGCTTTCCTACTATTTCCATGTGCTTGTGTTAGTTAATGACTTAATGGTGCATGAGATCATATATGTA TCCTGGTTGATGGATTGGATGGTATTATCAGATGATTCAAGGTTTCTGTGCCAGTTCTTGACCAACTTGAGTTATAAATC TTTATTTTTAGTAGTTTGGTAAGACTCCAGAATTTATTATGTCATTAATTAGGTGGTGATCATATTTCAATACCATTACG TAGAATTTCACCTCCATGCTGGTGGAATTCTTCTGATAAACTGCAAGAAAATGAAAATAAGTCCGAGACTCTTCTACCTA TTGGTCTTGGAAAGAACATGGAAGTGATGGAACAAAAGATAGGATAGTGTAAAGTTCAGTGACGTGTACGCTATGTTAAA CAACAAAATGGTGGAAGCTCGTGCGTTCTAAGTTTTCTTGTTGGGTCTCTGGTAAACAAGCATATATGGAACGGTCAGCT CATGAATCATGATCAACCCCAAATATTGAAGTGTTTCAATTTTAAAGTCACTGTCCTGGATTCCTCAAGTTCAAGTGGAA CTTAAGCTTAATTCTGATGCTTAGATTCTGAGATTTTGATATCTGGAGTATCTATTCCTTGCAAACCTTAGGTTCTGCAA CCTTGACAAATGGGCTTTTAAAGAGATTTACACCAGCTTTTAAGCTAGTTAGAACCTTACTGCTTTGGGATATGAGTACT GAAACATCCAAATTTAAATCTAAAAAATGAGTTATTGTTTAGATAAAGTTTTAGTTGTTTTTGTTTAAGACTGAAAGACT GAATTTGTTGTCATCTATCTAAACTCATCTTTGTTGGAAGGAGAAGAGTATCTGCTTTTCCATTAAAAAAATTATTAGAG GTTTAATTAATAAAATATTTCTACTCGCGGGTGGTTGGTTTATGTGGTTTATATTGATTTTTCTTAGGCGAGGTTTGGTG TTGAGTTTTGTGAATAGAAAAACTTATATTCTTATAATGTACTGCTAACTAATTACCTTACATTATTTTTCTTATATGCA GTTATTATTTATTTTCTTTCACTTTTGTAAATTTTAAAGCATTATAACATGAAGTGATCAATCAAAGTGGTGTGCGAGTC ATGTCGGATTAGAAAGGATCTTGTGCTTTTCTATTTTGGTTTATAGTTTCAAAGTCCAAAGATTCAAGACAGATAATCTC CCATCCTCATCCATCCGATGCACGTTGTATTCATTGAATGGTTGTTTTGCTTTTGCTGTATATATTTCTATCCAGCAAAT AATTTCTTGCCCCACCACCAGTGGCGGATCCAGGACCCCGGGGTCAGGGGGTTCAAATTTTTCAAATGAGGACATCGATA AAAATATAATTAAAA
CDS sequence (LotjaGi1g1v0563700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCTGTTGAATCGCGTTTGTCGTCTGAGTCCCAATCACCGCCACCTCTGCTTCGCCAAGTGCCACGACATCGTTTC TTCCATTCCTTCCACCACCACGCATCGTATCAGCAGCGTTTCCCATGCCGTGGCTTCCACCGGAAAGCGCGCGTTCCTCG TTGATACACTTGGCCTGGTTAGGGGTTTAGAGGCAAATGGGGTGCCGCCTAAACAGGCTGAAGCGATAACTTCTGCCATC ACTGAAGTTCTCAATGATAGCTTGGAAAATGTAGCTCATTCTTTTGTTACAAAATCAGAATTGCAAAAGTCAGAGATGCT CCAAGAATCAAATCTGTCAAAGTTCAAATCTGAAGTGCAAAGTTCTCAGGAGCATCATTTTTCTTTGTTACAAGGCCAGA CACAAAAGCTTCATAATGACATAGAGAAGATGAGAACTGAATTAAGGCATGAGATTGACAAAGTCACTGCAGGGCAACGT TTGGACTTGAATCTTGAAAGAGCACGCATACGGGATGAGCTTGCTAATCAAAATGCTGAAACCACCGCGCTGACAAACAA ACTTGATCGGGAAATCCATGCATTAAGAGCCCAGTTAGAAGCTGCAAAGTATGATGTGATCAAATACTGCATAGGTACCC TTGTCTCCATATCTGCAGTGGGTCTCGCTGTAATCCGTATCATATTGTAG
Protein sequence (LotjaGi1g1v0563700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLNRVCRLSPNHRHLCFAKCHDIVSSIPSTTTHRISSVSHAVASTGKRAFLVDTLGLVRGLEANGVPPKQAEAITSAI TEVLNDSLENVAHSFVTKSELQKSEMLQESNLSKFKSEVQSSQEHHFSLLQGQTQKLHNDIEKMRTELRHEIDKVTAGQR LDLNLERARIRDELANQNAETTALTNKLDREIHALRAQLEAAKYDVIKYCIGTLVSISAVGLAVIRIIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 205 | 205 | - | – | |
| PANTHER | 1 | 229 | 229 | 2.9E-116 | – | |
| PANTHER | 1 | 229 | 229 | 2.9E-116 | ||
| Pfam | 54 | 227 | 174 | 1.1E-72 | ||
| Coils | 160 | 180 | 21 | - | – | |
| Coils | 185 | 205 | 21 | - | – | |
| Phobius | 206 | 228 | 23 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 229 | 229 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0563700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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