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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0565600 |
Transcript ID | LotjaGi1g1v0565600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DUF241 domain protein; TAIR: AT2G17070.1 hypothetical protein (DUF241); Swiss-Prot: sp|P63708|CP123_MYCBO Putative cytochrome P450 123; TrEMBL-Plants: tr|A0A151S8G9|A0A151S8G9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0565600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109910974..109911914) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTTCAGAACTTTCAGTTTCCTGATAAAGAGAAAATGGCATTCCCTGAAACAAACTCAAAGATCTCTCTGCATATTCG CAGCAACAGCTTGCCCTCTTCACCTCACCCACTTTTATCAGAAGTCGAAGAGCATCTGCAGAGATTGAAGGACACCTCTT CAGTGAGCCACAAACTTAATGGTTTACTGGATTTACATGACTGCATTGATAGGTTGCTTCAATTGCCAATCAAACCACAA GAACTAGCAAGAGAATGCAATGAAAAGCGTGTCGACGACACACTAGAAGGTTCTTTGAAGCTCTTGGATATCTGTAGTGA ACTTAAAGATTTCCTACTTATGTCAAAGGAAATCATGTATGAACTTCAGTCAGTTATCCGAAGAAGGCGAAACGGTGAAA CAGGATTGAAAGTTGAGGGTGCTAAGTACTTGACTTCAAGAAAGAAGCTGAACAAGGTAATTAGAAAGTCCTTGGGAAAT TTGAAAGCAATGAAGCATGAGTGTGTAGAAGATGGAACTTCATTTATGATTAGTATCTTGAAAGAAGCAGAACAAGTCAC AGTGAGCTCATTAGAATCTATGTTGATGTTGATCTGTGATCAACCAAAGCATAGAAGATGGTCAACAATCTCAAAGATGT TACAGCCGAAAAGAGTAGCTTGTGATTCTCAAGAATCAGAAACAAGTGAATTTGAAAAAGTGGATGCAGCTTTGAAGTCT TCATCTTTTGAGCATTTTCAAAGCCATGCGGAAAATTTGGAGATGTGCATTCAGGATCTAGAAATAGGAGTTGAGCAACT CTCAAGAAAACTAATTAGAAACAGAGTTTCCCAACTCAACATCTTCAACCACTAATCATGAAAATCTCTATGATTCTTGT GAATTCAATTTTGACCCCAAATTGTACATGAATACAGAATATACATTGTTTAAAGATCAAC
CDS sequence (LotjaGi1g1v0565600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCCCTGAAACAAACTCAAAGATCTCTCTGCATATTCGCAGCAACAGCTTGCCCTCTTCACCTCACCCACTTTT ATCAGAAGTCGAAGAGCATCTGCAGAGATTGAAGGACACCTCTTCAGTGAGCCACAAACTTAATGGTTTACTGGATTTAC ATGACTGCATTGATAGGTTGCTTCAATTGCCAATCAAACCACAAGAACTAGCAAGAGAATGCAATGAAAAGCGTGTCGAC GACACACTAGAAGGTTCTTTGAAGCTCTTGGATATCTGTAGTGAACTTAAAGATTTCCTACTTATGTCAAAGGAAATCAT GTATGAACTTCAGTCAGTTATCCGAAGAAGGCGAAACGGTGAAACAGGATTGAAAGTTGAGGGTGCTAAGTACTTGACTT CAAGAAAGAAGCTGAACAAGGTAATTAGAAAGTCCTTGGGAAATTTGAAAGCAATGAAGCATGAGTGTGTAGAAGATGGA ACTTCATTTATGATTAGTATCTTGAAAGAAGCAGAACAAGTCACAGTGAGCTCATTAGAATCTATGTTGATGTTGATCTG TGATCAACCAAAGCATAGAAGATGGTCAACAATCTCAAAGATGTTACAGCCGAAAAGAGTAGCTTGTGATTCTCAAGAAT CAGAAACAAGTGAATTTGAAAAAGTGGATGCAGCTTTGAAGTCTTCATCTTTTGAGCATTTTCAAAGCCATGCGGAAAAT TTGGAGATGTGCATTCAGGATCTAGAAATAGGAGTTGAGCAACTCTCAAGAAAACTAATTAGAAACAGAGTTTCCCAACT CAACATCTTCAACCACTAA
Protein sequence (LotjaGi1g1v0565600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFPETNSKISLHIRSNSLPSSPHPLLSEVEEHLQRLKDTSSVSHKLNGLLDLHDCIDRLLQLPIKPQELARECNEKRVD DTLEGSLKLLDICSELKDFLLMSKEIMYELQSVIRRRRNGETGLKVEGAKYLTSRKKLNKVIRKSLGNLKAMKHECVEDG TSFMISILKEAEQVTVSSLESMLMLICDQPKHRRWSTISKMLQPKRVACDSQESETSEFEKVDAALKSSSFEHFQSHAEN LEMCIQDLEIGVEQLSRKLIRNRVSQLNIFNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 271 | 265 | 3.1E-109 | – | |
PANTHER | 7 | 271 | 265 | 3.1E-109 | – | |
Pfam | 46 | 269 | 224 | 8.8E-63 | ||
Coils | 238 | 258 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0565600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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