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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004320
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 60 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 7.155s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0072069.1
n.a. Uncharacterized protein TCM_001654 [Theobroma cacao] gi|508700878|gb|EOX92774.1| chr0 26606433 26607293 +
2 domain predictions
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Lj0g3v0115499.1
n.a. PREDICTED: reticulocyte-binding protein 2-like [Cicer arietinum] gi|502161658|ref|XP_004512240.1| chr0 50779836 50781316 -
2 domain predictions
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Lj0g3v0124329.1
n.a. Uncharacterized protein TCM_001654 [Theobroma cacao] gi|508700878|gb|EOX92774.1| chr0 55829622 55830482 +
2 domain predictions
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Lj0g3v0127129.1
n.a. PREDICTED: reticulocyte-binding protein 2-like [Cicer arietinum] gi|502161658|ref|XP_004512240.1| chr0 57296301 57297323 -
2 domain predictions
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Lj0g3v0232099.1
n.a. Uncharacterized protein TCM_034360 [Theobroma cacao] gi|508723320|gb|EOY15217.1| chr0 120437397 120438619 -
2 domain predictions
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Lj0g3v0258179.1
n.a. Uncharacterized protein TCM_034350 [Theobroma cacao] gi|508723307|gb|EOY15204.1| chr0 134059716 134061071 +
2 domain predictions
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Lj0g3v0265209.1
n.a. Uncharacterized protein TCM_000102 [Theobroma cacao] gi|508698816|gb|EOX90712.1| chr0 137385504 137386876 -
2 domain predictions
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Lj0g3v0312319.1
n.a. CM0216.180.nc [Lotus japonicus] gi|164564726|dbj|BAF98209.1| chr0 163012039 163012899 -
2 domain predictions
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Lj0g3v0312329.1
n.a. CM0216.320.nc [Lotus japonicus] gi|164564734|dbj|BAF98216.1| chr0 163014258 163015091 -
2 domain predictions
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Lj0g3v0326629.1
n.a. PREDICTED: reticulocyte-binding protein 2-like [Cicer arietinum] gi|502161658|ref|XP_004512240.1| chr0 170725926 170727459 -
2 domain predictions
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Lj1g3v2752330.1
n.a. Protein BPS1 [Medicago truncatula] gi|357507523|ref|XP_003624050.1| chr1 31565278 31568280 -
2 domain predictions
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Lj1g3v3382470.1
n.a. CM0216.330.nc [Lotus japonicus] gi|164564735|dbj|BAF98217.1| chr1 38864143 38865021 +
2 domain predictions
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Lj1g3v3382480.1
n.a. n.a. chr1 38866275 38876894 -
2 domain predictions
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Lj1g3v3382490.1
n.a. CM0216.320.nc [Lotus japonicus] gi|164564734|dbj|BAF98216.1| chr1 38868259 38869509 +
2 domain predictions
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Lj1g3v3382500.1
n.a. CM0216.320.nc [Lotus japonicus] gi|164564734|dbj|BAF98216.1| chr1 38868259 38879265 +
2 domain predictions
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Lj1g3v3382510.1
n.a. CM0216.320.nc [Lotus japonicus] gi|164564734|dbj|BAF98216.1| chr1 38878605 38879566 +
2 domain predictions
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Lj1g3v3383530.1
n.a. CM0216.180.nc [Lotus japonicus] gi|164564726|dbj|BAF98209.1| chr1 38889179 38890039 -
2 domain predictions
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Lj1g3v3383540.1
n.a. CM0216.320.nc [Lotus japonicus] gi|164564734|dbj|BAF98216.1| chr1 38891398 38892231 -
2 domain predictions
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Lj2g3v1646580.1
n.a. Uncharacterized protein TCM_000101 [Theobroma cacao] gi|508698815|gb|EOX90711.1| chr2 25632995 25633902 +
2 domain predictions
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Lj2g3v1646600.1
n.a. Uncharacterized protein TCM_000101 [Theobroma cacao] gi|508698815|gb|EOX90711.1| chr2 25647068 25647551 +
2 domain predictions
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Lj2g3v1646620.1
n.a. PREDICTED: reticulocyte-binding protein 2-like [Cicer arietinum] gi|502161658|ref|XP_004512240.1| chr2 25649398 25650529 +
2 domain predictions
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Lj2g3v1646650.1
n.a. PREDICTED: reticulocyte-binding protein 2-like [Cicer arietinum] gi|502161658|ref|XP_004512240.1| chr2 25655153 25656173 +
2 domain predictions
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Lj3g3v3363060.1
n.a. CM0216.180.nc [Lotus japonicus] gi|164564726|dbj|BAF98209.1| chr3 41324541 41325818 -
2 domain predictions
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Lj3g3v3363100.1
n.a. CM0216.240.nc [Lotus japonicus] gi|164564729|dbj|BAF98211.1| chr3 41332650 41333865 -
2 domain predictions
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Lj3g3v3363110.1
n.a. n.a. chr3 41334119 41336016 +
2 domain predictions
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Lj3g3v3363120.1
n.a. CM0216.210.nc [Lotus japonicus] gi|164564727|dbj|BAF98210.1| chr3 41335044 41338255 -
2 domain predictions
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Lj3g3v3363260.1
n.a. CM0216.240.nc [Lotus japonicus] gi|164564729|dbj|BAF98211.1| chr3 41348439 41352428 +
2 domain predictions
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Lj3g3v3363270.1
n.a. CM0216.240.nc [Lotus japonicus] gi|164564729|dbj|BAF98211.1| chr3 41355936 41357250 -
2 domain predictions
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Lj3g3v3363290.1
n.a. CM0216.320.nc [Lotus japonicus] gi|164564734|dbj|BAF98216.1| chr3 41360200 41361246 -
2 domain predictions
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Lj3g3v3363300.1
n.a. CM0216.280.nc [Lotus japonicus] gi|164564730|dbj|BAF98212.1| chr3 41362684 41363791 -
2 domain predictions
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Lj3g3v3363330.1
n.a. CM0216.320.nc [Lotus japonicus] gi|164564734|dbj|BAF98216.1| chr3 41374297 41375894 -
2 domain predictions
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Lj3g3v3363340.1
n.a. CM0216.330.nc [Lotus japonicus] gi|164564735|dbj|BAF98217.1| chr3 41377097 41379018 -
2 domain predictions
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Lj4g3v2789200.1
n.a. Uncharacterized protein TCM_000101 [Theobroma cacao] gi|508698815|gb|EOX90711.1| chr4 37411420 37412787 -
2 domain predictions
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LotjaGi1g1v0434700.1
n.a. DUF241 domain protein; TAIR: AT1G76240.1 DUF241 domain protein (DUF241); Swiss-Prot: sp|Q65S61|MNMC_MANSM tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; TrEMBL-Plants: tr|A0A072VDQ3|A0A072VDQ3_MEDTR DUF241 domain protein; Found in the gene: LotjaGi1g1v0434700 LjG1.1_chr1 92911918 92913089 -
2 domain predictions
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LotjaGi1g1v0480200.1
n.a. Protein BPS1, chloroplastic; TAIR: AT2G46080.1 BPS1-like protein; Swiss-Prot: sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic; TrEMBL-Plants: tr|G7L6L1|G7L6L1_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi1g1v0480200 LjG1.1_chr1 99237138 99242562 -
2 domain predictions
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LotjaGi1g1v0480200.2
n.a. Protein BPS1, chloroplastic; TAIR: AT2G46080.1 BPS1-like protein; Swiss-Prot: sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic; TrEMBL-Plants: tr|G7L6L1|G7L6L1_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi1g1v0480200 LjG1.1_chr1 99237232 99242536 -
2 domain predictions
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LotjaGi1g1v0480200.3
n.a. Protein BPS1, chloroplastic; TAIR: AT2G46080.1 BPS1-like protein; Swiss-Prot: sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic; TrEMBL-Plants: tr|G7L6L1|G7L6L1_MEDTR Plant/F1M20-13 protein; Found in the gene: LotjaGi1g1v0480200 LjG1.1_chr1 99240263 99241324 -
2 domain predictions
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LotjaGi1g1v0565500.1
n.a. DUF241 domain protein; TAIR: AT2G17080.1 hypothetical protein (DUF241); Swiss-Prot: sp|B8J3V0|BIOF_DESDA Putative 8-amino-7-oxononanoate synthase; TrEMBL-Plants: tr|A0A151R9F9|A0A151R9F9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0565500 LjG1.1_chr1 109906422 109907544 +
2 domain predictions
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LotjaGi1g1v0565600.1
n.a. DUF241 domain protein; TAIR: AT2G17070.1 hypothetical protein (DUF241); Swiss-Prot: sp|P63708|CP123_MYCBO Putative cytochrome P450 123; TrEMBL-Plants: tr|A0A151S8G9|A0A151S8G9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0565600 LjG1.1_chr1 109910974 109911914 +
2 domain predictions
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LotjaGi1g1v0565700.1
n.a. DUF241 domain protein; TAIR: AT2G17070.1 hypothetical protein (DUF241); Swiss-Prot: sp|P63708|CP123_MYCBO Putative cytochrome P450 123; TrEMBL-Plants: tr|A0A151S8G9|A0A151S8G9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0565700 LjG1.1_chr1 109914274 109915376 +
2 domain predictions
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LotjaGi1g1v0565900.1
n.a. DUF241 domain protein; TAIR: AT2G17070.1 hypothetical protein (DUF241); Swiss-Prot: sp|P0A3G6|LCND_LACLC Lactococcin A secretion protein LcnD; TrEMBL-Plants: tr|A0A151S8G9|A0A151S8G9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0565900 LjG1.1_chr1 109946940 109947935 +
2 domain predictions
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LotjaGi1g1v0566000.1
n.a. DUF241 domain protein; TAIR: AT2G17080.1 hypothetical protein (DUF241); Swiss-Prot: sp|P26162|BCHH_RHOCB Magnesium-chelatase subunit H; TrEMBL-Plants: tr|I1K762|I1K762_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0566000 LjG1.1_chr1 109948880 109950125 +
2 domain predictions
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LotjaGi2g1v0021500.1
n.a. DUF241 domain protein; TAIR: AT1G76210.1 DUF241 domain protein, putative (DUF241); Swiss-Prot: sp|P91124|RIC19_CAEEL Resistance to inhibitors of cholinesterase protein 19; TrEMBL-Plants: tr|A0A072VS58|A0A072VS58_MEDTR DUF241 domain protein; Found in the gene: LotjaGi2g1v0021500 LjG1.1_chr2 7691365 7692499 -
2 domain predictions
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LotjaGi2g1v0021500.2
n.a. DUF241 domain protein; TAIR: AT1G76210.1 DUF241 domain protein, putative (DUF241); Swiss-Prot: sp|A7FTY1|MURE_CLOB1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; TrEMBL-Plants: tr|A0A072VS58|A0A072VS58_MEDTR DUF241 domain protein; Found in the gene: LotjaGi2g1v0021500 LjG1.1_chr2 7691453 7692335 -
2 domain predictions
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LotjaGi2g1v0088100.1
n.a. DUF241 domain protein; TAIR: AT4G35690.1 hypothetical protein (DUF241); Swiss-Prot: sp|P37201|NCPR_CANTR NADPH--cytochrome P450 reductase; TrEMBL-Plants: tr|A0A0B2S567|A0A0B2S567_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0088100 LjG1.1_chr2 25694800 25696568 -
2 domain predictions
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LotjaGi2g1v0356700.1
n.a. DUF241 domain protein; TAIR: AT4G35660.1 selection/upkeep of intraepithelial T-cells protein, putative (DUF241); Swiss-Prot: sp|P85001|CE290_DANRE Centrosomal protein of 290 kDa; TrEMBL-Plants: tr|A0A1J7HE08|A0A1J7HE08_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0356700 LjG1.1_chr2 83306203 83307194 +
2 domain predictions
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LotjaGi2g1v0356900.1
n.a. DUF241 domain protein; TAIR: AT4G35680.1 selection/upkeep of intraepithelial T-cells protein; Swiss-Prot: sp|A6TGQ0|THIE_KLEP7 Thiamine-phosphate synthase; TrEMBL-Plants: tr|I3SX45|I3SX45_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0356900 LjG1.1_chr2 83320240 83321325 +
2 domain predictions
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LotjaGi2g1v0357000.1
n.a. DUF241 domain protein; TAIR: AT4G35690.1 hypothetical protein (DUF241); Swiss-Prot: sp|Q81ZZ5|METX_NITEU Homoserine O-acetyltransferase; TrEMBL-Plants: tr|I1J8F0|I1J8F0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0357000 LjG1.1_chr2 83322020 83323786 +
2 domain predictions
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LotjaGi2g1v0357100.1
n.a. DUF241 domain protein; TAIR: AT4G35690.1 hypothetical protein (DUF241); Swiss-Prot: sp|B0K250|Y240_THEPX UPF0309 protein Teth514_0240; TrEMBL-Plants: tr|I1J8F0|I1J8F0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0357100 LjG1.1_chr2 83328376 83329425 +
2 domain predictions
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LotjaGi2g1v0357300.1
n.a. DUF241 domain protein; TAIR: AT4G35720.1 DUF241 domain protein, putative (DUF241); Swiss-Prot: sp|P37201|NCPR_CANTR NADPH--cytochrome P450 reductase; TrEMBL-Plants: tr|A0A0B2S567|A0A0B2S567_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0357300 LjG1.1_chr2 83338214 83339506 -
2 domain predictions
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