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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0565900 |
| Transcript ID | LotjaGi1g1v0565900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF241 domain protein; TAIR: AT2G17070.1 hypothetical protein (DUF241); Swiss-Prot: sp|P0A3G6|LCND_LACLC Lactococcin A secretion protein LcnD; TrEMBL-Plants: tr|A0A151S8G9|A0A151S8G9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0565900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109946940..109947935) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTTCATAACTCACATTTTTCTGATAAGAGAAAATGGCATTCCCTGAAACAAACACAAAGAGCTCTCTGCATATTCGC AGCAACAGCTTGCCCTCTTCACCTCACCCGCTTGTATCAGAAATCGAAGAGCATCTACAAAGATTGAACGACACCTCTTC AGTGTCATCATCTTCAATAAGCCACAAACTCAATGGTTTACTTGATTTGCATGATTGCATTGATAAGTTACTTCAACTGC CAATCAAACAACAAGCATTAGCAAGAGAATGCAGTGAAAAACGCGTTGACGACATACTAGAAGGTTCTTTGAAGCTCTTG GATATCTCTAGTGCAGGGAAAGATTTTCTACTTGCGTCAAAGGAAATCATGTATGAACTTCAATCAGTTATCCGAAGAAG GCGAAGTGAGGAAACTGGATTCAAAGTTGAGGGTGCTAAGTACTTGGCTTCAAGGAAGAAGCTGAACAAGGCAATTAGAA AGTCCTTGGGAAATTTGAAAGCATTGAAACATGAGTGTGTAGAAGATGGCACTTTTTCCATGCTTAGAATCTTGAAAGAA GTAGAACAAGTCACAGTTAGCTCATTAGAATCTATGTTCATGTTGATCTGTGATCAATCAAAGCATAGAAGATGGTCAAC AATTTCAAAGATGTTGCAGCCTAAAAGAGTAGCTTGTGACTCTCAAGAATCAGAAACAAATGAATTTGAGAAGGTGGATG CAGCTTTGAAGTCTTCATCTTTTGAGCATTTTCAAAGCCATGTGGAAAGTTTGGAGATGTGCATTCAGGATCTAGAAATT GGAGTTGAGCAACTCACAAGAAAACTAATTAGAAACAGAGTTACCCTTCTCAATATCTTCAACCACTAATCATAGAAAAT CTCTATGATTGTTGTGAATACAATTTTGACACCATATATATTGTACATGAATGTGATTAAATTTTGTTTTTTCTACAGAA TATACATTATTTAAGGATCAAATTATAGTTCTTCAT
CDS sequence (LotjaGi1g1v0565900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCCCTGAAACAAACACAAAGAGCTCTCTGCATATTCGCAGCAACAGCTTGCCCTCTTCACCTCACCCGCTTGT ATCAGAAATCGAAGAGCATCTACAAAGATTGAACGACACCTCTTCAGTGTCATCATCTTCAATAAGCCACAAACTCAATG GTTTACTTGATTTGCATGATTGCATTGATAAGTTACTTCAACTGCCAATCAAACAACAAGCATTAGCAAGAGAATGCAGT GAAAAACGCGTTGACGACATACTAGAAGGTTCTTTGAAGCTCTTGGATATCTCTAGTGCAGGGAAAGATTTTCTACTTGC GTCAAAGGAAATCATGTATGAACTTCAATCAGTTATCCGAAGAAGGCGAAGTGAGGAAACTGGATTCAAAGTTGAGGGTG CTAAGTACTTGGCTTCAAGGAAGAAGCTGAACAAGGCAATTAGAAAGTCCTTGGGAAATTTGAAAGCATTGAAACATGAG TGTGTAGAAGATGGCACTTTTTCCATGCTTAGAATCTTGAAAGAAGTAGAACAAGTCACAGTTAGCTCATTAGAATCTAT GTTCATGTTGATCTGTGATCAATCAAAGCATAGAAGATGGTCAACAATTTCAAAGATGTTGCAGCCTAAAAGAGTAGCTT GTGACTCTCAAGAATCAGAAACAAATGAATTTGAGAAGGTGGATGCAGCTTTGAAGTCTTCATCTTTTGAGCATTTTCAA AGCCATGTGGAAAGTTTGGAGATGTGCATTCAGGATCTAGAAATTGGAGTTGAGCAACTCACAAGAAAACTAATTAGAAA CAGAGTTACCCTTCTCAATATCTTCAACCACTAA
Protein sequence (LotjaGi1g1v0565900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFPETNTKSSLHIRSNSLPSSPHPLVSEIEEHLQRLNDTSSVSSSSISHKLNGLLDLHDCIDKLLQLPIKQQALARECS EKRVDDILEGSLKLLDISSAGKDFLLASKEIMYELQSVIRRRRSEETGFKVEGAKYLASRKKLNKAIRKSLGNLKALKHE CVEDGTFSMLRILKEVEQVTVSSLESMFMLICDQSKHRRWSTISKMLQPKRVACDSQESETNEFEKVDAALKSSSFEHFQ SHVESLEMCIQDLEIGVEQLTRKLIRNRVTLLNIFNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 6 | 276 | 271 | 3.4E-115 | – | |
| PANTHER | 6 | 276 | 271 | 3.4E-115 | – | |
| Pfam | 51 | 274 | 224 | 8.2E-64 | ||
| Coils | 140 | 160 | 21 | - | – | |
| Coils | 243 | 263 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0565900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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