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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0566000 |
| Transcript ID | LotjaGi1g1v0566000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF241 domain protein; TAIR: AT2G17080.1 hypothetical protein (DUF241); Swiss-Prot: sp|P26162|BCHH_RHOCB Magnesium-chelatase subunit H; TrEMBL-Plants: tr|I1K762|I1K762_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0566000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109948880..109950125) extracted from Lotus japonicus Gifu genome v1.2.
TCTAACACCAGTGAAATCATGTTTAGATCCAAATCTCGATTAGTTAGCTTCCTTGATATCTGTTCAAGATCAGATTCCTC ATGTCTCCAACCACACATGATATGGATCAATATCTTATGTTCCCAAATGGTGTCTCAATTTCCTGTCTCACCAATAAAAT TTTGTCGTGTCAATTGTAACTGCCACAATATATATATTGAGAAGATGCCAATGCAAGAAAGGCAGATCCATAGACTCAAA CTCAAGCCTTCTCTTACTCTTTCTCTTCTTCTCTTGAGATAGAAAAAATGGAAGCCTCAAAATCCAATTTCCAAGGTAGA TCAAACAGCCTGCCCTCTAGACCACACCCTCTCATTCTAGAATGCAATCAACACTTGGAGAGCTTGAGAGCTTCCAGTGA GACCTCCTCTTCTAACTCATCATTTCTTAGCCATAACATAAGAGGCTTGCAAGATTTGATTGAGTGTGTTGAGAAATTGA TTCAGCTTCCACTCACCCAAGACACCCTTCTCCATGAGCAAAAAGAAAAATGGAACTTTTTGGATGGATCCTTAAGGCTC TTAGATGTGTGTGCTTCAGCCAAAGATGCTTTATTGCACACAAAAGAATGCACACGTGAGCTTCAATCAATCATAAGAAG GAGAAGGGGTGGTGAGTTGGAACTCATGGCAGAGGCTAAGAAATTCTTGACATCAAGAAAGGTAGTGAAACGGGCCATAT CAAAATCCTTGTCAAAAAATTGCAACTTTTTCTCATCAACAAACAAAGATCACCATCAAACAGTGGCTTTGTTACAAGAT GTGGAAGTGGCTACACTATCATCATTTCAGAAACTGATGCAGTTTATCTCAGGAACAACAACAACAACACAATCAAAGTC TAGAAGCTGGATTTTTATTTCTAAGATGATTCAGCCAAAAAGAGTGGCTTGCTCACTAGTGGAAGATGAAAGTGAATTTG CACAAGGGGATGTGGCATTACAGAGCTTCATATTTAGCAAGAATGGCAAAGTTGAAGAGGTGAATAATCTGCAAAATCAG TTGGAGAAATTGGAGTTGTGCATTCAAGACATTGAAGAAGGGCTTGAGTTTCTGTTTAGGCGTTTGATTAAAATCAGAGT TTCCCTTCTTAATATCCTCAACCACTAGTTGCAAATGCATATGGGGATTAAATTTTTGTATATGACATAGATGGATACAC TTGTAGATTGAAATCATAAATGTAAATGCCTAGTGATGATAAACAG
CDS sequence (LotjaGi1g1v0566000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCCTCAAAATCCAATTTCCAAGGTAGATCAAACAGCCTGCCCTCTAGACCACACCCTCTCATTCTAGAATGCAA TCAACACTTGGAGAGCTTGAGAGCTTCCAGTGAGACCTCCTCTTCTAACTCATCATTTCTTAGCCATAACATAAGAGGCT TGCAAGATTTGATTGAGTGTGTTGAGAAATTGATTCAGCTTCCACTCACCCAAGACACCCTTCTCCATGAGCAAAAAGAA AAATGGAACTTTTTGGATGGATCCTTAAGGCTCTTAGATGTGTGTGCTTCAGCCAAAGATGCTTTATTGCACACAAAAGA ATGCACACGTGAGCTTCAATCAATCATAAGAAGGAGAAGGGGTGGTGAGTTGGAACTCATGGCAGAGGCTAAGAAATTCT TGACATCAAGAAAGGTAGTGAAACGGGCCATATCAAAATCCTTGTCAAAAAATTGCAACTTTTTCTCATCAACAAACAAA GATCACCATCAAACAGTGGCTTTGTTACAAGATGTGGAAGTGGCTACACTATCATCATTTCAGAAACTGATGCAGTTTAT CTCAGGAACAACAACAACAACACAATCAAAGTCTAGAAGCTGGATTTTTATTTCTAAGATGATTCAGCCAAAAAGAGTGG CTTGCTCACTAGTGGAAGATGAAAGTGAATTTGCACAAGGGGATGTGGCATTACAGAGCTTCATATTTAGCAAGAATGGC AAAGTTGAAGAGGTGAATAATCTGCAAAATCAGTTGGAGAAATTGGAGTTGTGCATTCAAGACATTGAAGAAGGGCTTGA GTTTCTGTTTAGGCGTTTGATTAAAATCAGAGTTTCCCTTCTTAATATCCTCAACCACTAG
Protein sequence (LotjaGi1g1v0566000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEASKSNFQGRSNSLPSRPHPLILECNQHLESLRASSETSSSNSSFLSHNIRGLQDLIECVEKLIQLPLTQDTLLHEQKE KWNFLDGSLRLLDVCASAKDALLHTKECTRELQSIIRRRRGGELELMAEAKKFLTSRKVVKRAISKSLSKNCNFFSSTNK DHHQTVALLQDVEVATLSSFQKLMQFISGTTTTTQSKSRSWIFISKMIQPKRVACSLVEDESEFAQGDVALQSFIFSKNG KVEEVNNLQNQLEKLELCIQDIEEGLEFLFRRLIKIRVSLLNILNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 4 | 285 | 282 | 3.9E-130 | – | |
| PANTHER | 4 | 285 | 282 | 3.9E-130 | – | |
| Pfam | 52 | 283 | 232 | 2.0E-65 | ||
| Coils | 238 | 265 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0566000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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