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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0567000 |
| Transcript ID | LotjaGi1g1v0567000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase subunit; TAIR: AT3G25940.1 TFIIB zinc-binding protein; Swiss-Prot: sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12; TrEMBL-Plants: tr|G7JQD3|G7JQD3_MEDTR DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi1g1v0567000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110026603..110029640) extracted from Lotus japonicus Gifu genome v1.2.
CATGGTTTAAAAAAAAAACATTAAATTATTATTTATTTATTTATAGTACCTATTCAGCTCGAAATTGCAAAAACAAATGA AGTTAAACCTACACCTTGCAGAAAAGTTATACACCTTTTGCTACCCTCACGGCTGCTTCACCCACTCTCACTCTCATTCC CGTCGTCAGGTCTTCCAGCTACTCTACCGCCGCCCCGCCTGTCCCTCCTTCGCCGTGTGCCGCCGCCAAGCAGCGAATTC CTAATTGCCGGCCCATACATAAACGACTGCGTTTTGCTTCACGGTGCGGTAGCCATGGCTTATAGTCGCGAGCGTGATTT CTTGTTCTGTCACTACTGTGGGACAATGCTCACTGTCCCTTCAGTCAACTACGCTGAATGCCCCTTGTGCAAAAACAGGA GTAACATCAAAGGTTCTCTTCTTAATTTCTATCCGATAAGACCATGTTTGGAAGAGCTTATTTGAGTTTAGCTAGCTTAT ATCATTAGCGTTTATGCAAGTGTTTGAGAGATATTATGTATATACCTATGAGATGTTTTGAGTTTATTTTCATAAATTGT ATGGATTAGTTTATGAATAAGAGCTTATGCTTATCTGTAACCTATGTTTAGTTTATTTCATTAAGAGTATGTTTAGATAC AGATCAAAGAGCACTTATTGGAGCTTCTCTACTAGAACATGCATTGAATAAACTTCAATACGTGTTCTTTAGTCTGCATA AACTTATGTGATAAGCGCTTATTGCCACAAGCACTTAGGCCCCGTTTGGATAAACAGCTTAATTAAGCGCTTATGGTCAT AAGCGCTTATGACATAAGCGTTTATTCATAAGCTATTTTTAAAAATTTATTGAAATAAATTAAAAATAAGCTGTGTATAA GCATAAGCTGTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGCTTATGGCAGACCATAAGCTGT TTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTTCTGCTGTCAGATAAGCTCAAATAAGCTCTTCCAAACTGGGCCTT AATTAAGTTGTTTACTCAAACACACTCGAAGTCCATATTCAAAGGGGCTCTAAATATAATGTTCTTCTGATATTTTATGC ACCTTAACTTAATGTCCTTGTTCTCAGATATTGAAGGAAAGGAAATAAGTTACACCATTTCTGCTGAGGTATGCTTTACA TTTGCAGCTGATCATATTTTTATTGATTTACATGAATAGATTATTTCTATCATCTAACACGATTAAAAATAAGACTATGT TCTGCCATTTAACTCGTAGTTCTTATTGTTGGGTTTGTGAGCACCTGAAATTCCTTGATTACTTTATGTCTAGCAGTCTA GGTGGGAAGTGGGAATGGGTGAAAAGAGCAGAGTTTTGGGAGCGTGAAAATTTTAGCTGTCTTGAAATCTGGACCTCTAT TAAGAATTTGATGTCAAAAATTAAATTTGTTTGTTGTCATTGCATATTCACATTATTTAGATTAAGACAAAGGTTCCTTA TAAAAAATGTTTTGTATACACCCTAAAATCAGGATTGGTTCCTTATGTACCCTTGTGGTTGGCAGGAAATCAGAAGAGAG CTTGGAATCGAGACAATTGAAGAACAGAAGGTGCAATTGTCCAAGGTAATGCATCCTGTAAAATATCTTTAGTGGCATGA TCTTTAGGCGGACTTTTACAGTTTTAATGTTATTATTTCTTTGCAGGTCAACAAGACATGTGAAAAATGTGGGAATGGTG AAGCTACCTTTTATACCAGACAGGTATTGTTAGACTTTATGTTAAAGATTTGCCAATTTTATTTAAAGCTCAACGAGTAC TTCAAACACATGTAGTTGAATCTTTATAATTTCAGATGAGATCAGCGGATGAAGGGCAAACTACTTTCTACGCATGCACC CGCTGTGGTCATCAATTCCAGGAGAACTAAGTTAATGGATTTCCTGCACTCCTTACTTTTTTTTTGTTTCCAAGGCTGAT ATGTACCCTCTATATTTTACCAAACGTTGAAGGGAGAGAGCATTGTATGTGCAAGTGATAGAATTTAAGTTTGGACTGTT TGTAATTTGTGCAATGAAAGATGTCTTTAAGATTCAAAGTTACTGATCTACTAAAATTAAGATAGAAAATTACTAATGTT TTTTTTTTTGCGGGGGGGGGGGGGGGGGGGTTACATTACAGCCCTTCTGCTAGCTAGCTACTTCTTAGTTGCATTGCATA GTGCACATACTAACTTTTACTGTTTTCCCCCTCAAATCTCAATTAATTTTCTCGCATTACTCTGTTATGATAATCTGGTG TTTCCAGGAGTGTGCTAATTTGTTTATGAGTTTGTTTACTTGATGTTAATTCCTACTATAGATTCATATGAATATTTTGC TAGTTTTAGTATCTCTTTGTGATATTGTTCTCCTTCAGAGTATAGGCAATACTAGCTCTGGTCCTTGTTACTAAAACCAA ATATATACCTCACGTTTATTAAGAAATATAGTTAGGGTTTTGGACTGATATGGGCGGACCGAATCACTTTACTTTGGGCT TATTATTATCATGTAACAAATGGGCCGGGCAACCCATGGTCCAGCCGGGCCAAAACCCAAGCTATAAATAAAAGAGGACC GCCCAAGCGGCTGGGACCTATCATTTCACGCATTTTTACTCGCTTTGTTTACTCTCGCTTGCTCTCGATATTGGTTAGCC TTAGTCTGCGGTTCCATACCGGAACATTGGCGCCCACCGTGGGGCCGAAGGATACTTTCCTAGGCTTCAATTTTCACCGC GATGGTGACTCGATCCGGGGCGAACGGAGAGAGAAATCATGTTCAACAAAATGATGTTCCTCCCGATGCTCTTCAGCGGA TTATGGACGATCTCAATGAACTTCGTCAACATAATCAACAGTTACAAAATCAACTTACTGATCTCAATCAGACTCAGGGT TTACGAGAGGGCGATCGAAGAATGGCTGAGACGGTGGTGGACTTTCAACCTTTCACAGAAGAAATAGCGAACACCGCC
CDS sequence (LotjaGi1g1v0567000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTATAGTCGCGAGCGTGATTTCTTGTTCTGTCACTACTGTGGGACAATGCTCACTGTCCCTTCAGTCAACTACGC TGAATGCCCCTTGTGCAAAAACAGGAGTAACATCAAAGATATTGAAGGAAAGGAAATAAGTTACACCATTTCTGCTGAGG AAATCAGAAGAGAGCTTGGAATCGAGACAATTGAAGAACAGAAGGTGCAATTGTCCAAGGTCAACAAGACATGTGAAAAA TGTGGGAATGGTGAAGCTACCTTTTATACCAGACAGATGAGATCAGCGGATGAAGGGCAAACTACTTTCTACGCATGCAC CCGCTGTGGTCATCAATTCCAGGAGAACTAA
Protein sequence (LotjaGi1g1v0567000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYSRERDFLFCHYCGTMLTVPSVNYAECPLCKNRSNIKDIEGKEISYTISAEEIRRELGIETIEEQKVQLSKVNKTCEK CGNGEATFYTRQMRSADEGQTTFYACTRCGHQFQEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 116 | 111 | 1.2E-38 | – | |
| PANTHER | 6 | 116 | 111 | 1.2E-38 | – | |
| PIRSF | 9 | 116 | 108 | 5.5E-27 | ||
| SUPERFAMILY | 61 | 116 | 56 | 7.94E-20 | – | |
| Gene3D | 62 | 116 | 55 | 1.3E-19 | – | |
| CDD | 73 | 116 | 44 | 2.88358E-23 | ||
| ProSiteProfiles | 74 | 114 | 41 | 13.501 | ||
| SMART | 76 | 115 | 40 | 3.3E-17 | ||
| Pfam | 77 | 114 | 38 | 9.3E-18 | ||
| ProSitePatterns | 78 | 113 | 36 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | MRNA cleavage | Any process in which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0567000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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