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LotjaGi1g1v0567100.1

Overview

Field Value
Gene ID LotjaGi1g1v0567100
Transcript ID LotjaGi1g1v0567100.1
Lotus japonicus genome version Gifu v1.2
Description Wuschel-related homeobox protein; TAIR: AT4G35550.1 WUSCHEL related homeobox 13; Swiss-Prot: sp|Q5QMM3|WOX8_ORYSJ WUSCHEL-related homeobox 8; TrEMBL-Plants: tr|I3SR23|I3SR23_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0567100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:110034893..110036585) extracted from Lotus japonicus Gifu genome v1.2.

TGTAAAAGGAAACGAGACAAAATTGCGGGATTTGCGGGATGAGGCTTGATTGCGCAGCAAACTACGGTCTCTCCTTTTGG CTTGACTTGAAGGGAATGCAAAAACAGAGTCCAAAACTGAGTCAGTTCATTTGAGTCTCTGATTCTGAATTCTGATTGTG GAAGCAGCAAAATGGAGGGAGAACAACATGATATCTCAAATGGAGGTGGTTTATATGTGAAGGTGATGACTGACGAACAA ATGGAACTTCTCAGGCAACAGATTTCTGTCTACGCCACCATATGTGACAGCCTTGTTGAGATGCACAAGGCCATCACCAC TCAACAAGACCTCGCAGGTTCCCTTAACTACCCTCTCGTTTAAATTCAGTCGTTATCGCTTCGATTCGTATTTTAAAAAA AAGCTGATGTCAGAATCTAAGATTGGAATAAACTTTTCTTATACTAGTTACATATGATCAAATTAGGGGAATATTTGGTT AATTGTCTTGTTCAATTTGATGAAAGGAACCGAAGAATATTGAGAATTACCTTCTTAGTTATTATGTTTCGGGACTTGTT TTTGTTATACAGGACTGAGGCTGGGAAATTTGTACTGTGATCCACTAATGGTGTGTTCTGGACACAAGATAACTGCTAGG CAGCGCTGGACTCCGACGCCTCTGCAGCTTCAAATGCTCGAGCAAATTTTCGATCAAGGCAATGGAACTCCGAGCAAGCA GAAGATCAAGGAGATTGCTATTGAACTGGGGCAGCATGGTCAGATATCAGAGACGAATGTTTACAATTGGTTCCAGAACA GAAGGGCTCGTTCGAAGCGGAAGCAACTAGCTCCCACCACCCCGAGTCATGCTGAGCTGGAGGCGGCTGAGACAGAAGCT GTTGAGTCTCCAAAAGAGAAAAGGATATCTGCTGCAGAAAGTGTTCAAGTTCTTCAACCCTATGAGAATTCTTCATCACC TCACAGGCTCAAGGATTTTTACATCCAGAGTCCTGACATAGGTATTAATCTTTCAAATGAAATACTCATCTTACTAGTCT AGTACATCAACAATAAGAACAAAAGTCTTATTGCATTAGTGGGTTCGGTTTTATGGATCAGTTGGCGTTGATCCATATTG AAGATACGACCAGTTTTATATTCACCGCCGTAGGCCTAACACAACCTTCCTCATTTAGCCGAACTTAGGATCAGCTATGT GCCCTTAGTTCCCATCCCACCTCTCACTGTGTTTCATCCATGTGCACATATGTATAGTTAGCCATAAAGCTGATTAGAGA CACGGAATTTTGAGACATTCAATCTAAATGCTATTGGTTTGTTTTATGCAGGATTTGAGCAATTGTTGGGTAAAATAGAA GCTGGAGGCTGCTTTAGTTCTTATTTTCTGTGAGAAATCTGGGGGTTGACTTGTTAAAGACTGAATTCTCAAACGTTGCT GCCTAATTGCAGCTTGGTAGACTCAACATTATTGATGATATATTAATATAATATTATACATAGGACCTTTCATCATTCTC ATGATGCATATTGTACATATGGTTTTTTCTAGGTGCTTTGCAGACCTAACTGCCCTCTGTTGATCAGGAATTATTGTGAT TTGTTACAGTTTTACAGGTTTTGAACCAAATTGTTTCCACTAATTAGCATTGGATTTGAAGTATATAATACGATCTCCAA GCTTCGATTTTCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0567100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGGAGAACAACATGATATCTCAAATGGAGGTGGTTTATATGTGAAGGTGATGACTGACGAACAAATGGAACTTCT CAGGCAACAGATTTCTGTCTACGCCACCATATGTGACAGCCTTGTTGAGATGCACAAGGCCATCACCACTCAACAAGACC TCGCAGGACTGAGGCTGGGAAATTTGTACTGTGATCCACTAATGGTGTGTTCTGGACACAAGATAACTGCTAGGCAGCGC TGGACTCCGACGCCTCTGCAGCTTCAAATGCTCGAGCAAATTTTCGATCAAGGCAATGGAACTCCGAGCAAGCAGAAGAT CAAGGAGATTGCTATTGAACTGGGGCAGCATGGTCAGATATCAGAGACGAATGTTTACAATTGGTTCCAGAACAGAAGGG CTCGTTCGAAGCGGAAGCAACTAGCTCCCACCACCCCGAGTCATGCTGAGCTGGAGGCGGCTGAGACAGAAGCTGTTGAG TCTCCAAAAGAGAAAAGGATATCTGCTGCAGAAAGTGTTCAAGTTCTTCAACCCTATGAGAATTCTTCATCACCTCACAG GCTCAAGGATTTTTACATCCAGAGTCCTGACATAGGATTTGAGCAATTGTTGGGTAAAATAGAAGCTGGAGGCTGCTTTA GTTCTTATTTTCTGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0567100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEGEQHDISNGGGLYVKVMTDEQMELLRQQISVYATICDSLVEMHKAITTQQDLAGLRLGNLYCDPLMVCSGHKITARQR WTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRKQLAPTTPSHAELEAAETEAVE SPKEKRISAAESVQVLQPYENSSSPHRLKDFYIQSPDIGFEQLLGKIEAGGCFSSYFL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46777:SF4
6 199 194 1.2E-90 –
PANTHER
PTHR46777
6 199 194 1.2E-90 –
ProSiteProfiles
PS50071
74 139 66 15.354
IPR001356
Gene3D
G3DSA:1.10.10.60
76 139 64 2.4E-19 –
SMART
SM00389
76 143 68 2.7E-16
IPR001356
SUPERFAMILY
SSF46689
77 140 64 1.07E-19
IPR009057
Pfam
PF00046
78 138 61 3.0E-18
IPR001356
CDD
cd00086
78 140 63 2.42745E-16
IPR001356
MobiDBLite
mobidb-lite
137 165 29 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0567100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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