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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0568400 |
| Transcript ID | LotjaGi1g1v0568400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidylprolyl isomerase; TAIR: AT1G20810.1 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9LM71|FKB18_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic; TrEMBL-Plants: tr|I3SZ21|I3SZ21_LOTJA Peptidylprolyl isomerase; Found in the gene: LotjaGi1g1v0568400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110159530..110162062) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGATTGAGGGTGGATAGGATAAAACAAAAGCAGAGGTGGCAGAAGGTCCGCGACGAACACTGGCAATGACTTCTCCC GGCAATTGCACTTGCACCTGCAATTCAATAACTTTGTTGGGAGAGAAATTGAGCTTCGGTTATGGCGGTGGCGGTGGTGG TGGCGGCGTGCTTTCAAATTTGAATTTGAATCCAAAAGCCAAGTCCAGAGGAGTAGTTACAGTAGCAGCACTTTCACCTT CACAATCCAGAAGGTCGACGGCGGTTCTGATTTCATTGTTGCCTTTAACCGTCGATTGGCTCACTACGCCGCCGCCGGCC GCCGCCAGGGAGAGACGCAACAAGAAGAACATCCCCATTGATGAGTATCTTACTAGCCGTTAGTTATTCTTATCTTATCC GTTAGTTATTACTAGACTAATTTGGAAAAATGTTAGTTAGTTAGTTATGTCTTTGTGTTTTGTGATGTTTGATTGATTCA GCTGATGGATTGAAGTACTATGATTTGGTTGAGGGTAAAGGTTCAGTAGCTGAAAAAGGATCAACTGTTCAGGTTTGTTG GATTTGGGAAGATTTTACTTAATTTCTGCTTGGTTTGTTATTTACTCTTCAATTCTAGAACTTATGGACAGGTACACTTT GATTGCTTATATCGCGGAGTTACGGCTGTGTCGAGCAGAGAATCTAAAATCCTTGCTGGAAATCGTACAATTGCTCAGGT TCGAATCTTTTACCTGATTTGTTTGTGTGTGAGAGAAACAATGTAAGCTGCAATTACCGGCTACTAAAGATGTGTCATGT ATGTTCGGATATCAATTGAGTGTGACGTGAACATGCTTCATCGTAACCCATAAGAATAGTTATGTTATGTTCACTTTTTA TCTTGAAGTGAGTACTAACGGTCGCTTAGTCTAGTGTCAGCGGATATCCAAACATAACCTTAGTTTAGGAATTAGGATTG AAAAGTCCTCATGTTTTCGATTTTTGGATTCATGTATTAGGATGATTACTTAGAGTTTAGTCTCTTAGTATTACTGCTAA AAATGTGCTGGTCCAAGTGGGAGAGGGTTATGTGATCTTAGGTTCAATTCTGTATAGAAAAAGCACAATTGGCACCTTTG GCCCAATGAATTGGGATTTCCCAATTGGGCGGTTGAGAACACCTTGGAGTTTGGTACTTATCAACCAGGTGGGAGGATAT TCCTGATCACTAAAAAATATTGGCTACTAATAGGAAAAACTACTTTGTGTCTGAATTTTGAGTCAAATATCATCAAAATT TTCTAGATACTATATAGTGATCTCATCTCATGTCTAGAACATATAAAGGCTTGCTTTAGGCTTTACTTGAGCGTTGCTGA TGCATGGATGCTTTATGCTCTTGAAAGCCGTATGAATTCAAGGTGGGAGCTCCACCAGGAAGGGAAAGGAAGCGTGACTT TGTAGACAACCCGAATGGTCTGTTCTCTGCACAAGCATCACCAAAACCTCCAGCAGCTATGTATACAATTGTGGAAGGAA TGCGAGTTGGTGGAAAGGTGAACCAAATTCCGAACATCTTGCTTGCTTTTGTTGAAATGTGTCTTAGCTTAGTTATGGGT CTTTTTTTGTTCCTTTTCATGTTCTTATTGTTTTCATGAATAATGGTTGCAGCGAACTGTGCTCGTTCCTCCTGAAAATG GGTATGGAAAAAGGGGAATGAATGAGATTCCGGTAAAGACTTCTTATTGCTATCTCGTTTCTTTCACCATTGATGCTAAT TTAACTTTCGACTTAAACTTTGGTGAATTAACTTCTGTTGTTTTTTGTTGGGTCAATCTAGTCTTACAATATATCTAGGG ACAAGTGCTTTATAGGAGGAATTTGATCATGAAATTTGCGCTGCCATATTTTTCATGCGCTACTGTTGTAATTGGAACAC ATCACTGTTTGGTCATTGATGATTGCATAAAAATTTCATGAAGAATAAGTTTAGGAAACACTCATTCCCTTCCTATCCCT GAGTTGAAAATTGCGTCTCCTGTTGTTCATGTTTAAGTAATTGGTCTATGACTCAATGTACATTTAAAGAAAATGATAAA GTTACATGTTCTTATCAGATATTGTTTACAATGTTGCAGCCTGGAGCTACATTTGAAATGAATATTGAGCTTTTGCAAGT TAAAACTACCTGAAGAATGAGCTTGACTCCATCCTTATGAAGAATTCGATAGCTTCAGGATTTGTGCCCTGTGAGAGTGT GAGGCCATGGACACGGCTACTCTTTTCCCATTGACCTTTCATTATAATGCAGTCATCTTCCTTTTGTCGTGGTTACAATT TTAAAGTGATCTTATAATACTTTTGGATCACTTGTGTTGTATTTTATAAAATTGACCTCATGACCAAGCAGATGTATATT ATTTTTTGAAGAAAATAAAACTGTAACGTTAGATTTTCTCTAAAATGAGAAAGTAAATATACGTCCTTAATCAATGAATC TATATTAAATTTTAAGGGTTCAACTCCTTACATTACATGGATAAAGATTTGAC
CDS sequence (LotjaGi1g1v0568400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCTCCCGGCAATTGCACTTGCACCTGCAATTCAATAACTTTGTTGGGAGAGAAATTGAGCTTCGGTTATGGCGG TGGCGGTGGTGGTGGCGGCGTGCTTTCAAATTTGAATTTGAATCCAAAAGCCAAGTCCAGAGGAGTAGTTACAGTAGCAG CACTTTCACCTTCACAATCCAGAAGGTCGACGGCGGTTCTGATTTCATTGTTGCCTTTAACCGTCGATTGGCTCACTACG CCGCCGCCGGCCGCCGCCAGGGAGAGACGCAACAAGAAGAACATCCCCATTGATGAGTATCTTACTAGCCCTGATGGATT GAAGTACTATGATTTGGTTGAGGGTAAAGGTTCAGTAGCTGAAAAAGGATCAACTGTTCAGGTACACTTTGATTGCTTAT ATCGCGGAGTTACGGCTGTGTCGAGCAGAGAATCTAAAATCCTTGCTGGAAATCGTACAATTGCTCAGCCGTATGAATTC AAGGTGGGAGCTCCACCAGGAAGGGAAAGGAAGCGTGACTTTGTAGACAACCCGAATGGTCTGTTCTCTGCACAAGCATC ACCAAAACCTCCAGCAGCTATGTATACAATTGTGGAAGGAATGCGAGTTGGTGGAAAGCGAACTGTGCTCGTTCCTCCTG AAAATGGGTATGGAAAAAGGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAAATGAATATTGAGCTTTTGCAAGTT AAAACTACCTGA
Protein sequence (LotjaGi1g1v0568400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSPGNCTCTCNSITLLGEKLSFGYGGGGGGGGVLSNLNLNPKAKSRGVVTVAALSPSQSRRSTAVLISLLPLTVDWLTT PPPAAARERRNKKNIPIDEYLTSPDGLKYYDLVEGKGSVAEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTIAQPYEF KVGAPPGRERKRDFVDNPNGLFSAQASPKPPAAMYTIVEGMRVGGKRTVLVPPENGYGKRGMNEIPPGATFEMNIELLQV KTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 51 | 242 | 192 | 2.5E-101 | – | |
| Gene3D | 83 | 243 | 161 | 9.7E-27 | – | |
| SUPERFAMILY | 84 | 241 | 158 | 7.7E-21 | – | |
| Pfam | 119 | 238 | 120 | 4.1E-22 | ||
| ProSiteProfiles | 123 | 241 | 119 | 15.67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi1g1v0568400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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