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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0569200 |
| Transcript ID | LotjaGi1g1v0569200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT1G76420.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3; TrEMBL-Plants: tr|V7ATN9|V7ATN9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110213667..110216998) extracted from Lotus japonicus Gifu genome v1.2.
ACCTGTCTCCACCCCTGCTCACCGCTGCGCTAACTTGAGGTAGAGTTAGAGCTAAATCAAATTCTAAGAATAAAAACTGT GTTCTTCCTGAAAAATTGGCCTAAACCGACCTCTTTGTCTCTCTGGTGGAGCACGACCAAGAGTGTGGTGGTGAGAATGC GATGATGCTGACTGCAGGGGTTGGGGGTATCTGCAGAAGACACTTTGATGCTCAAGTCAGTGTATGAGTAATGAAAGAAT ACAAGAGCTCTAGAAGAATTAAAGGTAAAATGCTAAGAATGAATAACAAATCAGGTAAATGAACGATTGAACGTGTATTT ATAAAGTTGGAACCCGTGCTCCATACATGAAAGTGTACGAAAATCCTTAAATGGAAGCTCTCCAGCATATGATTAGGTTC GCAAGATCACATTTCGTTGCATCTAGACTAGTGCGTGACCGTTTGGACACTCGGACACTCACTAGGGACAACGTTCCTTT ATTAAGTCATGCTATCCACCCTTATCTTGATTGCAAGCTCTTTTAGTCAGTTAGGAACGATGCCTTAGACTTATAGCTAA CCTTAACACACTGCTTGCAAAACCTTTAACAGAAACTATAAGCAGATATACACTTTTATCGAACACACTTCTGAGATACA TTAATATACACTTATCATTACTCAACAATCAAACTTACTTTTGTAACAATAACATGCTAATTCAATGGAATTAGATTCTT AGTAACAAAAATTAAATCTCACCTTTGAAATATGTATAAATAATCGGTTAAACTCTGCAAACCAGCAGCTTTGCATTTAA TGCAAACATTACTTAAACCCGCAAACTATCTTGTTTCTTAACAGCACCACTTGCACTAGGACTAGGTAGTACAATACTCT TGTTTTTAACTGCTAGTCCATATATATCCATATGAACTCTTGTTTCGAGAAATTAAATTTTTAGGTGATACATAGGTTGG TTCTGTATATCTGCACACTGCATTCTGCAGTGTAGGCCCCACGTTCATTCAGGTTTATACGTATACCTGTTCTGTTCTGT TCATCCCTCTTGTGTTAATTCCCACTCTTATCTCCTCGTTTTCAGCTTTATATATCAGTTCACATCCATCTCACTACCTA CAACACCTTAATTTGCCATATATTCATTCCAGTTCATCAACTTTTTCCTCTTCATCTCCCTAATCATGTTAGCCATGGAA GATGTTCTGTGTGAACTCAGTGATCATGAAAAGAGAAACGAGCAAGGCTTGCCACCAGGCTTCAGGTTTCATCCAACTGA TGAAGAACTCATCACCTTCTATTTGGCCTCAAAGGTGTTTAATGGCACCTTCACTACTACTAATGTCAAGTTTGCTGAAG TTGATCTCAATCGATGTGAGCCATGGGAACTTCCAGGTACATATCCCATTCATCTACCTTCTGCTTAATTTATAGTTAAT TCATTAGATTTGTTCATCACATGTTTATATATAACTAATTCTTCTCTTCCTAAATCTTCATCACATGCAAAATTAATGTA ACAATATGTATATTACTAGTATATACTCTAGTAATTAATGCTGTTGTTATTGTTGAATTAATTATTAGATGTGGCAAAGA TGGGGGAGAGAGAGTGGTATCTGTTCAGTTTGAGGGACAAAAAATACCCAACTGGACTCAGAACAAACAGAGCAACTGGA GCAGGGTACTGGAAAGCCACTGGGAAAGACAAAGAAGTTTACAGTGCTAGTTCCAATGGAGAAAAGCTCTTACTTGGCAT GAAGAAAACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGAGAGAAGACCAGATGGGTCATGCATGAGTACCGTTTGG ATGGTCACTTCTCCATTTCCCACCATCACACAACTCTCATCTCTAAGGTATATAACACAGTGAAATTAAAATTATGGTGA ATAATAACAAAAATTAAAAAATAATTGCTTCAGTTAGTTTACTGTTGATTTTAACTTACTATAATATTAAAAGTGTATTT AAGTATGGATTTAATTGTTATGTTATCCACAATTTTGATATTTGTTGAATTCAACTTTTTCCATCAGATTAAAACAGAAT CTGTTGTCGTGAGAATCAAGTAATCTGTGTTCTGCTCCCACCCTGGTCCCATGAATTCCTAGTTCTCTTAAATTTTGTCC ACTTTTGGGTTGACCAATGTGGATATACAGAGACAGACATCAAGTCATTTCCTAACTTGACCCTTTTCACTTACTAGTAT TAACCATTTGGGTAGTTTTTTATTTGATTGAAGGGATATTTACTAGCAACATGCATGTGATCTTGTGAATCAGCACATTT AGTTTCCTTTTCTTTCTCCTTCATTCATTGCTTCTTTTCTATGATATCAATCCTGCCACAATCACATAAAAATAATCACA TATTCAATGTATTTTCTAAAATATCAATGAAGGATATATTATTATACCAAAAAATGGGTTAATTACTTAAATAGTGATAA ACATTCACCAACACTCATTTTTCTGGCGGTTTTTACAAATTAAAATATTAAGTGTTTTTCGTGTTGTCCACTTTGTTAAC GGTTAAAAATGTCTATGTCCACTTAATATTATGATTCATGTCAGGAGAATGTCAATTATACAGTTGATTAGTATATGATA AGGTCTCTAATATTAATTATTTATGACAGGAGGAGTGGGTGATATGCAGAATATTTCACAAATCTGGGGAAAAGAAAGTC CAAGGACATTTGAATGCTGATTCTCCATCCCCCACGAAAAACACTACTACTCTACCACCTCCATTATCACTTGCAAAAAC CCCAACTAATTCCTTAACATTGTGTCAATCCAAAACCTCATCACATCACCACAGCTTCCAAAATGATTCTGATCATCTTT TCCCATTCCAACCTGCTTGTTTTCCCTACACCAGAGATCACCATCCATCTTCTGAAGTATTCTTCAAGACTCAGCTATCT CAACAGGTCAAGGAGCAATTCACAACTCCAAAACGAACCAAAATGGAGACTACAACAGTACTCCATGATCAACAGCAATT ATTAGAAGATGCTAATTATAATTATAACTTGCGCTGGATGGACAATAAGTTGAACTCAAATCCAAGTAATTTCCAGAACT TATTCCCTCTTGAGATCATGGATGCTACTGGCATGATGCTAGATGTTCCTATCGGAATGGATTCTTGGTCTCAGGCCCAG CATGTCTAAAAATGTATATATGTTTATGAACTGTTTCATATAACAACGCTTAGTAGCTACTAATCTCTGTGTTGTAGCAG AAATAACTTGTGTATGCCTATGTATCAAGCTTAATTTCCGTGGAACAAAGAA
CDS sequence (LotjaGi1g1v0569200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGCCATGGAAGATGTTCTGTGTGAACTCAGTGATCATGAAAAGAGAAACGAGCAAGGCTTGCCACCAGGCTTCAG GTTTCATCCAACTGATGAAGAACTCATCACCTTCTATTTGGCCTCAAAGGTGTTTAATGGCACCTTCACTACTACTAATG TCAAGTTTGCTGAAGTTGATCTCAATCGATGTGAGCCATGGGAACTTCCAGATGTGGCAAAGATGGGGGAGAGAGAGTGG TATCTGTTCAGTTTGAGGGACAAAAAATACCCAACTGGACTCAGAACAAACAGAGCAACTGGAGCAGGGTACTGGAAAGC CACTGGGAAAGACAAAGAAGTTTACAGTGCTAGTTCCAATGGAGAAAAGCTCTTACTTGGCATGAAGAAAACCCTTGTTT TCTACAAAGGCAGGGCCCCTCGTGGAGAGAAGACCAGATGGGTCATGCATGAGTACCGTTTGGATGGTCACTTCTCCATT TCCCACCATCACACAACTCTCATCTCTAAGGAGGAGTGGGTGATATGCAGAATATTTCACAAATCTGGGGAAAAGAAAGT CCAAGGACATTTGAATGCTGATTCTCCATCCCCCACGAAAAACACTACTACTCTACCACCTCCATTATCACTTGCAAAAA CCCCAACTAATTCCTTAACATTGTGTCAATCCAAAACCTCATCACATCACCACAGCTTCCAAAATGATTCTGATCATCTT TTCCCATTCCAACCTGCTTGTTTTCCCTACACCAGAGATCACCATCCATCTTCTGAAGTATTCTTCAAGACTCAGCTATC TCAACAGGTCAAGGAGCAATTCACAACTCCAAAACGAACCAAAATGGAGACTACAACAGTACTCCATGATCAACAGCAAT TATTAGAAGATGCTAATTATAATTATAACTTGCGCTGGATGGACAATAAGTTGAACTCAAATCCAAGTAATTTCCAGAAC TTATTCCCTCTTGAGATCATGGATGCTACTGGCATGATGCTAGATGTTCCTATCGGAATGGATTCTTGGTCTCAGGCCCA GCATGTCTAA
Protein sequence (LotjaGi1g1v0569200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLAMEDVLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGTFTTTNVKFAEVDLNRCEPWELPDVAKMGEREW YLFSLRDKKYPTGLRTNRATGAGYWKATGKDKEVYSASSNGEKLLLGMKKTLVFYKGRAPRGEKTRWVMHEYRLDGHFSI SHHHTTLISKEEWVICRIFHKSGEKKVQGHLNADSPSPTKNTTTLPPPLSLAKTPTNSLTLCQSKTSSHHHSFQNDSDHL FPFQPACFPYTRDHHPSSEVFFKTQLSQQVKEQFTTPKRTKMETTTVLHDQQQLLEDANYNYNLRWMDNKLNSNPSNFQN LFPLEIMDATGMMLDVPIGMDSWSQAQHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 291 | 283 | 8.0E-111 | – | |
| PANTHER | 9 | 291 | 283 | 8.0E-111 | – | |
| SUPERFAMILY | 17 | 181 | 165 | 5.49E-60 | ||
| ProSiteProfiles | 22 | 181 | 160 | 56.776 | ||
| Pfam | 23 | 154 | 132 | 3.9E-38 | ||
| Gene3D | 31 | 187 | 157 | 3.2E-55 | ||
| MobiDBLite | 187 | 211 | 25 | - | – | |
| MobiDBLite | 192 | 211 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0569200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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