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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0569200 |
| Transcript ID | LotjaGi1g1v0569200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT1G76420.1 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3; TrEMBL-Plants: tr|V7ATN9|V7ATN9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0569200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:110213667..110220876) extracted from Lotus japonicus Gifu genome v1.2.
CTCCTCATCTTCTCCACTCTCACGGTCAAAATCTCTCCACTCTCTCAACGACATAAATTTTCTCCTCTCCTCATCTTCTC CACTCCTTCTCTCCCAAAAAATTAAACAATAAGCCACAAATCTTCAAGAATCAAGTCAAGAGATTGAAGGGTGGGTCATG GGTGGGTTACTTACCAGTTACCTCAAGGGCAGAGGACAACAAAGAAGAAACTGAAGAGGGAAGGGAAGACCCGTCTGGAG CGTCGGGGATGGTGGACGCCGGTGGAGTGCCGGTCGAACTCGAAGCAGTGGAGCACAAAATCCGATCGTTTCAGTTCTCT ACTTCTCTCACGGTCAGAGCTAGAGGAAGAGAAGCTGGAAGATTGATGGGTTGCCTCAGAGGTAGAGGAAGTCAGATATA AGGAGTGGAATGGCTCAAAGCCTCAAAGAATCTTCAATCTATTCAAATTATTGAAAATACAGGTTAGGTTTACTATGATT TCTGAGTTGAATTTAAGAAAAAGCTGAAATTTTGTACAAGAATCTTCATTCTGTTCAAATTATTGAAAATTACAAGCTAC TTTGCTATGATTTCTGAGTTGAATCTAAGAAAAAGCTGAAATTTTGGACAAGATTCTCTGATTCTCCTCTGATTTTCTCT ATTATTAGTTCTGAAAAGGGTTTTTTGGGGGAAAAAGGCTGTCACGGTAAAAACGCCCGTGACGCCGTTACGGTGCGGCC GAAACGCCGTTACGTCGCGGCCGTAATCTGTGATTCGGAGTAGCAACGAGAATTCGTTCCGTAACGGTAACGCTCTTCGC CGTTACCGCAACATATCAGACGTTTTTTAAATAACGTTCCGTTATTTAGAACCTTGGCCACCATTGTTGACCACCTTGGT TGGGAATGACATTTTCCAACAATCTCCCCCTCCATACCAACCAAGAGAGTGACATATTGACTATGCTTCTACACAGCCCT GAGCTTCTTCACGAGGGACTGTCTTCACGTTTTCATCTGGATTCTCCTTCTCTGATGAACCTTATCTCTTGAAGAAAACC TGCTTCAACCACAACATCTCTTTTCCAGCTTCTGCATCAGCCGATGCTTAGCTTCAGTTAATGGTAAGCTTGCAATCTTG ACTACAAGACAAAGCTCCCCTTGATTTTGACATTCCACCATCAGGTTCTCTAGCTATATCTAAGTCTGCACAATCTTCCA AGACTAGATCATCTCTCCAAAGCTCGTCTTTGGTGTACCCTCCTGGTACATGAGAATCGATGCCACTGCTTCGTAATGCT GAACAATAAGGGACTACTCCATACATTCTAGTAGGAGACTTACCCACACCTTTACTTGTACCGCCGTCGCACATCAACGG GTCACGCCGCTTGGCTATCACACTGCCAAGAAGTCTTTCGACACAAGGAGCCGTTACACCATGGTCGCACTAACCATCAG CTCTCTTCAGCTTGTATGCAGTTCACCAGGTAAGTTTCCAGGAAAGAGAGGTGAGTCACAACGGACTACTTAAATACCAA GTCTTTCCTAGCCAGAACCTTTTCCTGAGACTTTAGAACCCTCTGATTGCTCATTTTCCTCCTTGAGGTATCATTGTGAA GAACGCCATCTTCACCATCATGTGTTCAAGTTCCCCCATATCTCTTCAGGCTGACTCCGGATACCTCTACACGGAATCAC CAAGCAAATTCTGCTGAGACTTTTCAACTACAAGAAGATCACCATCATCACCATCTAAGATGAGGTGGAGAGAGGTGAAA GATGAGAGAGATAGGAAGAAGAAAAAAAAGTAAGAGAGAGAAAGTATGAGATGTGATAAATGATAAGAAGAGAGATATAG AAATAAAAATAAGTGAAAATGAAGTGTTTTGTAAATAATGTGTGTATATATCATTGTTGTTGCAACATGAATCAACTCTA AAGTCTAAACCCTCTTTTTCTACCGGTCCTAACATGTTGCAACACTACCGCTTCAAACCACCCTTCCCAACTCTATCCCT CACCAACATTAACACCAGTGTCTCAGGCTCTCAACTCATCCCTCCTTCCTCCCTCTACAACACCTCTGCCCCTGTGGGGG AGGGGAGCGAGGTGGAAGGAAAGGAGAAGGGGAGAGAGGGGAGGGAGGTGGGTGATAGTGTAAAAAAGTCTAAAATTGAA CATTTTTTTCATGTTCATATTAGATAAATTCTAAATTTTAACTTCACAAAATAAAGAGAAATTTTCATATTTTTAGAGAT TAACATGGAATGTTTAATATATTTTTTAAAAAACTAAATTGAATTATTATAAATTACTCTCAAGAACTTTTCTGATGAAT TTTATTTAATAATTCACCAGTACTAAATTGACCAATCAGTAGCATTGAAGAAATCAAAATCACTTATTACTCAATTGTTC AGATACTATGAGAAAGATTGTGTGTGAAGAAAAAGGAAAGCTACTATAGTATGACATGCGATCACCATTCCCAAGTCACC AAGAATGAATTCCATTAATGAAAAAGAGAAATTACTCTGCTTTACCACAGGAGAGTGGATACCTAGGGATATGATATCTC TGCACATTGAAGGTAAAGATAAAAAAAGGAAAGACAAGCAAAACAAGGCAAGATATAATGATAAAAATGAATTAAGATAT CACAAAAGCACATGCATACAGACACAGGGGGGCTAAGGGCATAGGCTTATGTAAGCTACATATAATGTAGGCTATATGGC GTATTGGATTCTTGTTCTGCATCTGCTGCTATATCTTTTACTTGGGTGAGTTTCTAAGATCTAAGGCACCTGCAAATTTC AGATATTCATTCATTCATTCAATTCAAAACGCGGCTAATTTAAATGCTGTGTGTTATGCAAATGCACGTGCACGTACTGT CCCTTTGTGATTGATTCAAAACAGTTTAGTACCAGCTCCGTTCAGCTACACTCACGCTGCTACCATCTAGAGTCTCTACT TGTTTACCTATACTATATATCATGCGAGGGTTCAAATTGAATAGCGTGCATTCGTGTGCAATTATTTGAGCTGAGATCAT AATTAAGATTTTAATTAGTTAACTCAATGTTAATATAGCCCACATTCAGTAGATATATAGCCAAGACATTCTTTACATGG TAGAATAATCATCATAAGCTACTTTTTGAATCACTCATAAGCTAGTTTTTGAATAGAGTTGTAATTTAAATTCTGAAATG GTATTAGATAGAGTTTACCCAACATTCGCTTATCAAAGACTTACTCATTTATGAGTCACCCACATATGTTTATTCCTGGT ATTTTCATGCTTTAAATGACAAACCATGAACATGTGAGAGACTGTGTTAAGGTTCTCAATTAACTAGAGAAATGATAAAG ATTATCCTTGTATGGATGAAGCAATCCTCACCGCCAGGGGTGGAGCTACAGTGGGGGTTTCTCCCTGCTGTAACCACCCT AAATTTTTTACATTTTATTAACAAAAAAAAAATTAAAGTTCATATCTCATATTTTCTCAAGTGAATAGCACCCATAACTC ACACTCTTTCTTTTTATGTGTGGAACCTTGGTGTGGAAGTGATATTTTATGTGTATTATCTTCGATTGTTATGAATTTAC GGTGTGCTACTTTTCTACTTCGTAATTTTGAGAGGGCACAAGTTTTTTTTGATAAGCAAGAGAAGGCACAAGTAGCTGTA GTTTTTTTTTGTTGATTCTGAATTTTTTTCTCTCAGCAAAATGCCTATTAGTATCTCTCTTGTACTCAAACTAATTTTAT ATTTATTATGTTTATATATTATTAGTTATTTATAATTTTTCCACATTCTTTATGTGATAAAAAATAAAATTTTCTTATAG ATCATATTACTTTAGATCTTAGCACCCTCTATAAAAAAACCTGTCTCCACCCCTGCTCACCGCTGCGCTAACTTGAGGTA GAGTTAGAGCTAAATCAAATTCTAAGAATAAAAACTGTGTTCTTCCTGAAAAATTGGCCTAAACCGACCTCTTTGTCTCT CTGGTGGAGCACGACCAAGAGTGTGGTGGTGAGAATGCGATGATGCTGACTGCAGGGGTTGGGGGTATCTGCAGAAGACA CTTTGATGCTCAAGTCAGTGTATGAGTAATGAAAGAATACAAGAGCTCTAGAAGAATTAAAGGTAAAATGCTAAGAATGA ATAACAAATCAGGTAAATGAACGATTGAACGTGTATTTATAAAGTTGGAACCCGTGCTCCATACATGAAAGTGTACGAAA ATCCTTAAATGGAAGCTCTCCAGCATATGATTAGGTTCGCAAGATCACATTTCGTTGCATCTAGACTAGTGCGTGACCGT TTGGACACTCGGACACTCACTAGGGACAACGTTCCTTTATTAAGTCATGCTATCCACCCTTATCTTGATTGCAAGCTCTT TTAGTCAGTTAGGAACGATGCCTTAGACTTATAGCTAACCTTAACACACTGCTTGCAAAACCTTTAACAGAAACTATAAG CAGATATACACTTTTATCGAACACACTTCTGAGATACATTAATATACACTTATCATTACTCAACAATCAAACTTACTTTT GTAACAATAACATGCTAATTCAATGGAATTAGATTCTTAGTAACAAAAATTAAATCTCACCTTTGAAATATGTATAAATA ATCGGTTAAACTCTGCAAACCAGCAGCTTTGCATTTAATGCAAACATTACTTAAACCCGCAAACTATCTTGTTTCTTAAC AGCACCACTTGCACTAGGACTAGGTAGTACAATACTCTTGTTTTTAACTGCTAGTCCATATATATCCATATGAACTCTTG TTTCGAGAAATTAAATTTTTAGGTGATACATAGGTTGGTTCTGTATATCTGCACACTGCATTCTGCAGTGTAGGCCCCAC GTTCATTCAGGTTTATACGTATACCTGTTCTGTTCTGTTCATCCCTCTTGTGTTAATTCCCACTCTTATCTCCTCGTTTT CAGCTTTATATATCAGTTCACATCCATCTCACTACCTACAACACCTTAATTTGCCATATATTCATTCCAGTTCATCAACT TTTTCCTCTTCATCTCCCTAATCATGTTAGCCATGGAAGATGTTCTGTGTGAACTCAGTGATCATGAAAAGAGAAACGAG CAAGGCTTGCCACCAGGCTTCAGGTTTCATCCAACTGATGAAGAACTCATCACCTTCTATTTGGCCTCAAAGGTGTTTAA TGGCACCTTCACTACTACTAATGTCAAGTTTGCTGAAGTTGATCTCAATCGATGTGAGCCATGGGAACTTCCAGGTACAT ATCCCATTCATCTACCTTCTGCTTAATTTATAGTTAATTCATTAGATTTGTTCATCACATGTTTATATATAACTAATTCT TCTCTTCCTAAATCTTCATCACATGCAAAATTAATGTAACAATATGTATATTACTAGTATATACTCTAGTAATTAATGCT GTTGTTATTGTTGAATTAATTATTAGATGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTTCAGTTTGAGGGACAAAA AATACCCAACTGGACTCAGAACAAACAGAGCAACTGGAGCAGGGTACTGGAAAGCCACTGGGAAAGACAAAGAAGTTTAC AGTGCTAGTTCCAATGGAGAAAAGCTCTTACTTGGCATGAAGAAAACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGG AGAGAAGACCAGATGGGTCATGCATGAGTACCGTTTGGATGGTCACTTCTCCATTTCCCACCATCACACAACTCTCATCT CTAAGGTATATAACACAGTGAAATTAAAATTATGGTGAATAATAACAAAAATTAAAAAATAATTGCTTCAGTTAGTTTAC TGTTGATTTTAACTTACTATAATATTAAAAGTGTATTTAAGTATGGATTTAATTGTTATGTTATCCACAATTTTGATATT TGTTGAATTCAACTTTTTCCATCAGATTAAAACAGAATCTGTTGTCGTGAGAATCAAGTAATCTGTGTTCTGCTCCCACC CTGGTCCCATGAATTCCTAGTTCTCTTAAATTTTGTCCACTTTTGGGTTGACCAATGTGGATATACAGAGACAGACATCA AGTCATTTCCTAACTTGACCCTTTTCACTTACTAGTATTAACCATTTGGGTAGTTTTTTATTTGATTGAAGGGATATTTA CTAGCAACATGCATGTGATCTTGTGAATCAGCACATTTAGTTTCCTTTTCTTTCTCCTTCATTCATTGCTTCTTTTCTAT GATATCAATCCTGCCACAATCACATAAAAATAATCACATATTCAATGTATTTTCTAAAATATCAATGAAGGATATATTAT TATACCAAAAAATGGGTTAATTACTTAAATAGTGATAAACATTCACCAACACTCATTTTTCTGGCGGTTTTTACAAATTA AAATATTAAGTGTTTTTCGTGTTGTCCACTTTGTTAACGGTTAAAAATGTCTATGTCCACTTAATATTATGATTCATGTC AGGAGAATGTCAATTATACAGTTGATTAGTATATGATAAGGTCTCTAATATTAATTATTTATGACAGGAGGAGTGGGTGA TATGCAGAATATTTCACAAATCTGGGGAAAAGAAAGTCCAAGGACATTTGAATGCTGATTCTCCATCCCCCACGAAAAAC ACTACTACTCTACCACCTCCATTATCACTTGCAAAAACCCCAACTAATTCCTTAACATTGTGTCAATCCAAAACCTCATC ACATCACCACAGCTTCCAAAATGATTCTGATCATCTTTTCCCATTCCAACCTGCTTGTTTTCCCTACACCAGAGATCACC ATCCATCTTCTGAAGTATTCTTCAAGACTCAGCTATCTCAACAGGTCAAGGAGCAATTCACAACTCCAAAACGAACCAAA ATGGAGACTACAACAGTACTCCATGATCAACAGCAATTATTAGAAGATGCTAATTATAATTATAACTTGCGCTGGATGGA CAATAAGTTGAACTCAAATCCAAGTAATTTCCAGAACTTATTCCCTCTTGAGATCATGGATGCTACTGGCATGATGCTAG ATGTTCCTATCGGAATGGATTCTTGGTCTCAGGCCCAGCATGTCTAAAAATGTATATATGTTTATGAACTGTTTCATATA ACAACGCTTAGTAGCTACTAATCTCTGTGTTGTAGCAGAAATAACTTGTGTATGCCTATGTATCAAGCTTAATTTCCGTG GAACAAAGAA
CDS sequence (LotjaGi1g1v0569200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAGAGAGAGTGGTATCTGTTCAGTTTGAGGGACAAAAAATACCCAACTGGACTCAGAACAAACAGAGCAACTGG AGCAGGGTACTGGAAAGCCACTGGGAAAGACAAAGAAGTTTACAGTGCTAGTTCCAATGGAGAAAAGCTCTTACTTGGCA TGAAGAAAACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGTGGAGAGAAGACCAGATGGGTCATGCATGAGTACCGTTTG GATGGTCACTTCTCCATTTCCCACCATCACACAACTCTCATCTCTAAGGAGGAGTGGGTGATATGCAGAATATTTCACAA ATCTGGGGAAAAGAAAGTCCAAGGACATTTGAATGCTGATTCTCCATCCCCCACGAAAAACACTACTACTCTACCACCTC CATTATCACTTGCAAAAACCCCAACTAATTCCTTAACATTGTGTCAATCCAAAACCTCATCACATCACCACAGCTTCCAA AATGATTCTGATCATCTTTTCCCATTCCAACCTGCTTGTTTTCCCTACACCAGAGATCACCATCCATCTTCTGAAGTATT CTTCAAGACTCAGCTATCTCAACAGGTCAAGGAGCAATTCACAACTCCAAAACGAACCAAAATGGAGACTACAACAGTAC TCCATGATCAACAGCAATTATTAGAAGATGCTAATTATAATTATAACTTGCGCTGGATGGACAATAAGTTGAACTCAAAT CCAAGTAATTTCCAGAACTTATTCCCTCTTGAGATCATGGATGCTACTGGCATGATGCTAGATGTTCCTATCGGAATGGA TTCTTGGTCTCAGGCCCAGCATGTCTAA
Protein sequence (LotjaGi1g1v0569200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEREWYLFSLRDKKYPTGLRTNRATGAGYWKATGKDKEVYSASSNGEKLLLGMKKTLVFYKGRAPRGEKTRWVMHEYRL DGHFSISHHHTTLISKEEWVICRIFHKSGEKKVQGHLNADSPSPTKNTTTLPPPLSLAKTPTNSLTLCQSKTSSHHHSFQ NDSDHLFPFQPACFPYTRDHHPSSEVFFKTQLSQQVKEQFTTPKRTKMETTTVLHDQQQLLEDANYNYNLRWMDNKLNSN PSNFQNLFPLEIMDATGMMLDVPIGMDSWSQAQHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 217 | 217 | 2.8E-69 | – | |
| PANTHER | 1 | 217 | 217 | 2.8E-69 | – | |
| ProSiteProfiles | 1 | 107 | 107 | 39.672 | ||
| Gene3D | 1 | 113 | 113 | 7.1E-40 | ||
| Pfam | 2 | 80 | 79 | 4.8E-18 | ||
| SUPERFAMILY | 2 | 107 | 106 | 1.57E-36 | ||
| MobiDBLite | 113 | 137 | 25 | - | – | |
| MobiDBLite | 118 | 137 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0569200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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