Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0574600.2

Overview

Field Value
Gene ID LotjaGi1g1v0574600
Transcript ID LotjaGi1g1v0574600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pectinesterase; TAIR: AT1G11580.1 methylesterase PCR A; Swiss-Prot: sp|Q1JPL7|PME18_ARATH Pectinesterase/pectinesterase inhibitor 18; TrEMBL-Plants: tr|I3SVI0|I3SVI0_LOTJA Pectinesterase; Found in the gene: LotjaGi1g1v0574600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:110892429..110893110) extracted from Lotus japonicus Gifu genome v1.2.

GTTTATAGCCCAAGACATTTGGTTCCAAAACACAGCAGGACCAGAAAAGCACCAGGCAGTGGCTCTTCGTGTTGGAGCAG ACCAATCCATCATAAACCGTTGTCGAATTGACGCTTACCAAGACACTCTCTACGCCCATACGAATAGACAGTTCTACCGA GACTCCTTCATCACAGGTACCGTTGACTTCATATTCGGAAACGCGGCTGTTGTGTTCCAAAAGTGCAATATAGTGGCCCG AAAGCCCATGAGTAACCAGAAAAACATGCTCACGGCCCAAGGGCGTGAAGACCCAAACCAAAACACAGGAACTTCAATTC AGCAATGTAACCTGACACCAAGCCAAGACCTTAAGCCCGTTGCGGGCTCCATTAAAACTTATTTGGGTCGCCCGTGGAAG AAGTACTCAAGAACTATTGTGCTACAGTCCTCAATTGATAGCCATATTGATCCAACAGGATGGGCTGAGTGGGATGCTCA GAGTAAGGACTTTCTGCAGACATTGTATTATGGAGAGTACTTGAACAGTGGAGCAGGTGCTGGTACTGGTAAAAGAGTGA ACTGGCCTGGTTTCCATGTCATTAAAACAGCAGCAGAGGCTAGCAAGTTCACTGTAGCACAACTCATCCAAGGTAATGTT TGGTTAAAAGGCAAGGGGGTTAACTTCATTGAGGGCCTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0574600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTAACCAGAAAAACATGCTCACGGCCCAAGGGCGTGAAGACCCAAACCAAAACACAGGAACTTCAATTCAGCAATG TAACCTGACACCAAGCCAAGACCTTAAGCCCGTTGCGGGCTCCATTAAAACTTATTTGGGTCGCCCGTGGAAGAAGTACT CAAGAACTATTGTGCTACAGTCCTCAATTGATAGCCATATTGATCCAACAGGATGGGCTGAGTGGGATGCTCAGAGTAAG GACTTTCTGCAGACATTGTATTATGGAGAGTACTTGAACAGTGGAGCAGGTGCTGGTACTGGTAAAAGAGTGAACTGGCC TGGTTTCCATGTCATTAAAACAGCAGCAGAGGCTAGCAAGTTCACTGTAGCACAACTCATCCAAGGTAATGTTTGGTTAA AAGGCAAGGGGGTTAACTTCATTGAGGGCCTTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0574600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSNQKNMLTAQGREDPNQNTGTSIQQCNLTPSQDLKPVAGSIKTYLGRPWKKYSRTIVLQSSIDSHIDPTGWAEWDAQSK DFLQTLYYGEYLNSGAGAGTGKRVNWPGFHVIKTAAEASKFTVAQLIQGNVWLKGKGVNFIEGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 - –
PANTHER
PTHR31707:SF221
1 140 140 1.1E-61 –
PANTHER
PTHR31707
1 140 140 1.1E-61 –
Pfam
PF01095
1 130 130 1.0E-52
IPR000070
Gene3D
G3DSA:2.160.20.10
1 144 144 2.2E-47
IPR012334
SUPERFAMILY
SSF51126
2 143 142 3.14E-38
IPR011050

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0574600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…