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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0578200 |
| Transcript ID | LotjaGi1g1v0578200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PRA1 family protein; TAIR: AT3G11397.1 prenylated RAB acceptor 1.A3; Swiss-Prot: sp|Q9LZM7|PR1A1_ARATH PRA1 family protein A1; TrEMBL-Plants: tr|K7MTA5|K7MTA5_SOYBN PRA1 family protein; Found in the gene: LotjaGi1g1v0578200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111791148..111794715) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTGGGGGAACGTGACCGCAGAGGATCTGATCGACGCCCTCCGCGAGGTGGATTGGTCATCACCGCCGCGCCCTCT CTCCGAATTCTTCTCCCGATTCGCCCTCCCAAGATCTTCCTCCAAATGGAATAGCCGCCTCAAATGCAATCTCTACTAGT ACCAACCAACCCCTTTCTCCCTTCCATTTTTTCGTTTCTTCAATCAAATCACAACAAATTTCATTTTTCTTTATTTTTCC TTAAGTATTGCATAAATTGGGGAATTACATGTTACTTTTTTTTTTACTTCTCTGAATTAATCACAGTAGAGAAATTTTAG GGTTTCAGAAATATTGATGATGGTTATGCTTATTGTATTTGCAGCTATCGGACCAACTATTTCATTTTGATTGTTTCGGT TCTCAGTAAGTGGACAATGCATCATTCCTACTATTTATTTATTCAGATTTTCGCATTCGATGATTGTGTGTGTGCCTACC TGTCTCTAAATGCCACCACGTTTTTGAAATTGCAGTATTGGGTTTTCTCCGGAGGCCGCTCGCTGTTCTGGCCGCGCTTC TTACTGCACTCAGCATCGCCTTTCTAAATGACAGGTAAGCCGACTGGCTGTTTTTCGTGTGCGGCTTTCAATTATTGGTT TTTGGAGTTTATTTGATTCTGCAAGATTTTGCTGCTAGTTAAGTGTGCAAGGTTTTGTATAAGTTTAGGACATAGGATTT TGCTTCCATTTTCATGTATCTTAATATGGCTTCTTTGCTTGTGTGACGAAAGTAAAAGTAACATATGCTTCAATTATATG GGCTGTTTTGGCATCTTAATTAAGCGAAGACCCTCAGGATCACATTATGGTAGTTTAATATGTTGAGTTGTGTCATCCTG TTTACTGCCTAGGTTGATGGGATACTTATGCTGATATGCTATATTTTTTTGGGGGGGGGGGGGGGTTGCTGTGTCAAGGA AATCTTGTGCTGTGCCTTTAGTTACATATTAATCTTGAAAAGTGCAGAGGAGTCTGTAAGAGGAATTAGGGATTAGGAAA TTTTGCGTGTTTGGCTGGTGAGAAAGATAAGGTAGAAAAAAAAGCTCTGATTATCAAGGATGAGTTGTCAAATAAGAAAT TGAGAAATAAGAGAAGGAATCCGTAACCTGGTGTTTGCATTGGTGGGTGTGTTTTTGCATGATAGAGGAAGAGAGGGGAT GCATGTTACTGTGCAGGGGAAAATAAATGGGATTTTGACTTTTAAGTGGTGCTGTGTGTGGCACAAAAAGTTGTCCCGTG GTTACTTGAATAACAAATTTTCGGACTTTGGCATGTGCTTCTCTTTATGTTTTCCTATAGGAAATTGTTTTAATTAAACA CGGAACAAATATTTTTTCCCGTCGAGTCCTTAAATTTTTACTTTTTAGCAAATAAAATGCATGACATTTAGTGTTCAGAC GTTCAGTGTATCCTTATGTAGAAAAATATTCTCAGAAGTCTTCGGAAAAGTTGTATATGATTGCTTTCTAGTTGAACTTG ACTTTGACTGCAGGACTACCCCCCCCCCCCCACCCACAATGTGCTTCTCTTTATGTTTTCCTATAGGAAATTGTTATTCA GTGTATCCTTATGTAGAAACAAGATTCTCAGAAGTCTTGGGAAAAGTTTTATATGATTGCTTTCTAGTTGAACTTGACTT TGACTGCAGGACTAACCCCAACACACACACGCATTGAATCCTGTCATAAAACTGAAATGATATGAATCACATGGTAGTTT TACTTCCAGCTTTAGATATGGCTTCTGCGATGCATGATTTGTGTGGAAGATTAATGATATGTTTTATTTTGAAAATGGCC AACATAGTTTTTTTTACCTTATTCTTATCATCTTATGGAAAATACATCATTTTTTTTAAAGGAATGAACAAATACATAGT CTGGAGCATGGAAAATAGGTAGTTTGATAGAAATTGATGAACTTTGGTCAAGTTTAGACCATGGACTACATACGTCTACT GGAACGCACCTTTGCTTGTGACTTATAAAATGGTAGTTTATGTTCTCTAGTACTCCACTGTTGTATTCAGAAGTGCAAAT TGGCTTTGTGAAATCATTTATTCCAGTGTTTTCAAATAGCAGATCTCACGGCGCTATAGCATAGCGCTCTGAGGGCTTAC CGCTATTTTCCGCTCTGAGGGCTTGACATAGTGGATTTTTGGCTTTCCGCTATTTTCCGCTCTGTAATTAACAACACTGT TTATTTGAGGAAAAAATAACTCCAACAGGTTATGTTATGATGTGAATACATTTGGCTGCCAAAAGAGCTATGAGTATGAA TTTAGTTGTTTATTATACTTAGGTGACATGGACTATTTGACAATTGTTTATTCCAGTAATACTTACATCAGGAGAATTTG TTAGTTATTTGAATAAATTTGGCACACAATCCATCAGTAGGATTCTGAGAAGTATTCATTTACTCTTTTCTGTTCTATTA GAATGAAACTGCAAACTTTTGTATATGTATTTCTTCAATCTATTTGGTATTAGGTGACATGGACTATTTGACAATTATTT ATTCCAGTAAGACTTACCTCAGGAGAATTTGTTAATTATTTGAATAAATTTGGCACACAATCCATCCATCTATAGGATTC TGATAAGTATTCATTTACACTTTTCTGTTCCATTAGAATGAAAATGCAAACTTTTCTACATGTATTACTTCAATCTAATT GGTATTAGGTGACATGGACTATTTGACAATGATTTATTCCAGTAAGACTTACCTTAGGAGAATTTGTTAATTATTTGAAC AAATTTGGCACACAATTCAGCAGTAGGATTCTGAGAAGTATTCATTTACTCTTTTCTATGTCATTAGAATGGAAATGCAA ACTTTTCTATATGTATTGCTTCAATTTAATTGGTATTTTTTTGTGTGCAGTTTTGCAGGTACCTTTAGTGAGAAGGTTAC AAGAACAGTTAGGCAGTTTTCACCGCATTTAGCTGCTAAGATGAGACCTCCTCTTACGTAAGTATGTTAGGTTGTTTTCA TGTCTTCATATATTTGGACATTTCTGCATCTAAGGTTACAAGTGATTATTTATATCCCAGGCCTGTCATTCGTGGACGTC CTGCAGCTAAGAGAGCAATTTATATTTGTGGCCGGCCACGTTGGGTGTTTGTGTTGATATTTTCTTCTGGTAAATGTAGT CCTTGAAGCAAAAATTTCTTGCACAATAATAATTTGGGATGTTCTTTCAATCCTTGCTCCTTCCCAATTTTTGACGACAG TGCTACTTTTACCCCTATTTTGCAGCAAGTTTCATCCTTTGGTTTGTTTCTGCTGGTCTCCTTACTGTTTTATGGGCACT TGCTATTGGTCTTCTTGGTAAATTGCATACTGAGAAATTTTAATCTTAATATTGTTAGCATTTGTGTCCTTGATTTTTAT GTTGATTTTCCTCACTCTTTTCAGCTACCATCCTGCATGCAAGCTTTAGAACACCTAACCTGAAAGCACGTTTAAACACA TTCCGTGAAGAATTCCGTGCAGTATGGCGCAATTATAGTGAGCTGTAG
CDS sequence (LotjaGi1g1v0578200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTGGGGGAACGTGACCGCAGAGGATCTGATCGACGCCCTCCGCGAGGTGGATTGGTCATCACCGCCGCGCCCTCT CTCCGAATTCTTCTCCCGATTCGCCCTCCCAAGATCTTCCTCCAAATGGAATAGCCGCCTCAAATGCAATCTCTACTACT ATCGGACCAACTATTTCATTTTGATTGTTTCGGTTCTCATATTGGGTTTTCTCCGGAGGCCGCTCGCTGTTCTGGCCGCG CTTCTTACTGCACTCAGCATCGCCTTTCTAAATGACAGTTTTGCAGGTACCTTTAGTGAGAAGGTTACAAGAACAGTTAG GCAGTTTTCACCGCATTTAGCTGCTAAGATGAGACCTCCTCTTACGCCTGTCATTCGTGGACGTCCTGCAGCTAAGAGAG CAATTTATATTTGTGGCCGGCCACGTTGGGTGTTTGTGTTGATATTTTCTTCTGCAAGTTTCATCCTTTGGTTTGTTTCT GCTGGTCTCCTTACTGTTTTATGGGCACTTGCTATTGGTCTTCTTGCTACCATCCTGCATGCAAGCTTTAGAACACCTAA CCTGAAAGCACGTTTAAACACATTCCGTGAAGAATTCCGTGCAGTATGGCGCAATTATAGTGAGCTGTAG
Protein sequence (LotjaGi1g1v0578200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDWGNVTAEDLIDALREVDWSSPPRPLSEFFSRFALPRSSSKWNSRLKCNLYYYRTNYFILIVSVLILGFLRRPLAVLAA LLTALSIAFLNDSFAGTFSEKVTRTVRQFSPHLAAKMRPPLTPVIRGRPAAKRAIYICGRPRWVFVLIFSSASFILWFVS AGLLTVLWALAIGLLATILHASFRTPNLKARLNTFREEFRAVWRNYSEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 209 | 209 | 1.8E-134 | – | |
| PANTHER | 1 | 209 | 209 | 1.8E-134 | – | |
| Phobius | 1 | 51 | 51 | - | – | |
| Pfam | 20 | 192 | 173 | 1.8E-43 | ||
| TMHMM | 51 | 71 | 21 | - | – | |
| Phobius | 52 | 71 | 20 | - | – | |
| Phobius | 72 | 76 | 5 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 77 | 98 | 22 | - | – | |
| Phobius | 99 | 142 | 44 | - | – | |
| TMHMM | 143 | 160 | 18 | - | – | |
| Phobius | 143 | 160 | 18 | - | – | |
| Phobius | 161 | 165 | 5 | - | – | |
| TMHMM | 164 | 183 | 20 | - | – | |
| Phobius | 166 | 183 | 18 | - | – | |
| Phobius | 184 | 209 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0578200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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