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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0578800 |
| Transcript ID | LotjaGi1g1v0578800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT5G43290.1 WRKY DNA-binding protein 49; Swiss-Prot: sp|Q9FHR7|WRK49_ARATH Probable WRKY transcription factor 49; TrEMBL-Plants: tr|A0A0B2S7Q5|A0A0B2S7Q5_GLYSO Putative WRKY transcription factor 49; Found in the gene: LotjaGi1g1v0578800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111833003..111835451) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTATGAGGTGGTGAGTGATGACACATCTTGCAATTATGTAACGAGTGTTGCTATGTTCTTTGGAATATATAGAAAT CTCAATGGAAGTCAAAGGAGAATACATCCAAAATATAGCCACATGCAACTTGGGTTACTTTTTAAAGTCAACAACCACCT CCTCATCTATCTGCTCCACTCTTTCCTTTCTCATTACCCTATTATCTTCTTCACCTTCCTTCCTCTTTCAACTGCTAAAA GGATATTCGTCAATGGTTGAGTCTGCCCAAAGACAATGATGGAGGAAATAATGGCCAATTGGTCTCCAATATTAGATGAT GATGGGTCTCCTTTTCTCATGCAGCCAGAGCCAAACAACACCATAATTAGAGCAGTTTCAAGAGACCAAGCCTTTAATTA TAGGTTCATCTCCAACATTTACTCAGGCCCTACCATCTCAGACATTGAAAATGCTTTATCTGTGACCACCAACAAAACAG AGCACTTTTCAGCATCAGCCAGGTAGGAAATTAAACTTCAAATTTCCTCACTTCTTTTCTACAATTTTCTTATTCATTTG GTTCACCTTAATTTGATGTATATTTGGTTCAGAGTTTCCATTTTGGAAAGGAATTTGAGCAAGATTGAGAACAAGTACAC CCTGAAAATCAAATGCTTCGGCAATGGGATGGGTGATGATGGATATAAGTGGCGGAAGTATGGACAGAAATCTATTAAGA ATAGCCCAAATCCTAGGTAATTAAACTCTTTCTTCTATGTAATTTTAACACACACACGCACGGACACAAATAAATGGAAC AATCACTTTTGGATTTCACTGCTTTACAAATTAATTTGCTTGTATAAAAGCTGCAGAGATTCCCATAAACCTACTACCCT GTCATGCATGAAAGACATAAGGGACAAGTTATCTTCAACTTAACTGCTTCTTTCTCATACAAAATTTTATTCATGACTTT GATCACTTTCACTATGTATAAACATAGGGATTATTCGATTAGGCAATTCTGTTACACCATTGCAAATCGAAAACATGTAA ATCAATCTGAAAATCCACATCAATTCATAGGCTAATAGGTTTGTCAAACACTAATATGCTTTGTAATTAATAGTTACTAA CTAGTGGGGCTCTTTCTCACTATATTATTTCCAATGATAGAATAGCTCATAACTTTTTGATCTGTGACATAGATCATATG AAAAAGGTAAGTGGATGAGGAATATTTACACCTCAATTAGTTTCCAACGGTATTCATGTCTCATAACCAAAGATATATAG CAAATTGGGCTGACAGTTGAATTGCCAATTTAATTATGTACTAAAACGTTTAACTTTTCAATTAAAGCTAGCAACTTGCG TTACTAAACTTCAATTTTTAGAGCCCCACTGATAATTAATTGATCCACATATTATCAAATAAATACAAGTTTAACGTTAC TTTACCAATAATGTCCCGTGTAACCAATTATTTGGTGTAGACACTAATTCAAGATTTGAAGAGAAGAAACAAAATTAGTA AATGTGATTTGTCATATAACAAAGAAAAAAATAGTGTATATGAGTATTGTTACGATTATGGTCTACACGCATTAGGACCA TTATTTTACATCCCTATTTACTTATAGTGAACTGAGTGTGTTTTCATACATTTTCATGATATAACAACTTCCATCATTAA TAAATTTGTGTATAAGCTAATTTGAATGACAATATGCCTTCTAGTATAGTACTAATATTATAGGAAAACAATTAGACTAC TTTAGTTTACTGCATAGTACTTAAGTTAATTAATTATTACTAAATTTAATTCCATGGAACAAACAGGAGTTACTATAGAT GCACCAATCCAAGGTGCAGTGCGAAGAAGCAGGTTGAAAGATCCAATGAGGACCCTGAGACTCTTATCATCACATATGAA GGGCTCCACCTCCACTTTGCATACCCATGCTTCCTGGTGGGCCAACCACAGCAATCCCAGTCCCACCCACCAGTCAAGAA GTCCAAGTTTACCTCTTCACAAGTCCAAGCCCAGGCCCAAGCCCAGGACTTCATAGTCAACGAAGCCCAAGCCAGTGCTT CTGTGGGCCTGACATCACCCACGCTGCTGAACTCTCCACAAGACATGGCCCAACAAAATTTGGGCTCACAAGGGTTGCTT GAAGACATGGTGCCATTCATGGTGAGAAACCCCTCCAACAACCTCAACAGTGGTTACTCGAAACTTTCATGTTCCGCAGA CCCTTCTCCAACATCACCTCCTCTGTGGACTTCTGGTCATTCCACCTCCTTTCATACCGTTGGCTTGAATTCAACCACTT AGATTATATATATAATGTATATGTAAAGATTTAGAGACTCAATAATTTCATCGAGGAGTTGTTATTATTATTTTGTTTAT GTTAATGTAATAATGCATCATATGAGAATATAGTTTTTTATAATGCAAG
CDS sequence (LotjaGi1g1v0578800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGGAAATAATGGCCAATTGGTCTCCAATATTAGATGATGATGGGTCTCCTTTTCTCATGCAGCCAGAGCCAAA CAACACCATAATTAGAGCAGTTTCAAGAGACCAAGCCTTTAATTATAGGTTCATCTCCAACATTTACTCAGGCCCTACCA TCTCAGACATTGAAAATGCTTTATCTGTGACCACCAACAAAACAGAGCACTTTTCAGCATCAGCCAGAGTTTCCATTTTG GAAAGGAATTTGAGCAAGATTGAGAACAAGTACACCCTGAAAATCAAATGCTTCGGCAATGGGATGGGTGATGATGGATA TAAGTGGCGGAAGTATGGACAGAAATCTATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGATGCACCAATCCAAGGT GCAGTGCGAAGAAGCAGGTTGAAAGATCCAATGAGGACCCTGAGACTCTTATCATCACATATGAAGGGCTCCACCTCCAC TTTGCATACCCATGCTTCCTGGTGGGCCAACCACAGCAATCCCAGTCCCACCCACCAGTCAAGAAGTCCAAGTTTACCTC TTCACAAGTCCAAGCCCAGGCCCAAGCCCAGGACTTCATAGTCAACGAAGCCCAAGCCAGTGCTTCTGTGGGCCTGACAT CACCCACGCTGCTGAACTCTCCACAAGACATGGCCCAACAAAATTTGGGCTCACAAGGGTTGCTTGAAGACATGGTGCCA TTCATGGTGAGAAACCCCTCCAACAACCTCAACAGTGGTTACTCGAAACTTTCATGTTCCGCAGACCCTTCTCCAACATC ACCTCCTCTGTGGACTTCTGGTCATTCCACCTCCTTTCATACCGTTGGCTTGAATTCAACCACTTAG
Protein sequence (LotjaGi1g1v0578800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEEIMANWSPILDDDGSPFLMQPEPNNTIIRAVSRDQAFNYRFISNIYSGPTISDIENALSVTTNKTEHFSASARVSIL ERNLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPETLIITYEGLHLH FAYPCFLVGQPQQSQSHPPVKKSKFTSSQVQAQAQAQDFIVNEAQASASVGLTSPTLLNSPQDMAQQNLGSQGLLEDMVP FMVRNPSNNLNSGYSKLSCSADPSPTSPPLWTSGHSTSFHTVGLNSTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 273 | 261 | 6.1E-100 | – | |
| PANTHER | 13 | 273 | 261 | 6.1E-100 | – | |
| Gene3D | 92 | 163 | 72 | 1.3E-29 | ||
| ProSiteProfiles | 98 | 163 | 66 | 27.393 | ||
| SUPERFAMILY | 101 | 160 | 60 | 8.89E-27 | ||
| SMART | 103 | 162 | 60 | 8.7E-36 | ||
| Pfam | 104 | 160 | 57 | 2.3E-26 | ||
| MobiDBLite | 257 | 288 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0578800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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