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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0579300 |
| Transcript ID | LotjaGi1g1v0579300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Avr9/Cf-9 rapidly elicited protein 137, putative; TAIR: AT3G23160.1 plant/protein (DUF668); Swiss-Prot: sp|Q2RK79|MURG_MOOTA UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TrEMBL-Plants: tr|A0A072UAW8|A0A072UAW8_MEDTR Avr9/Cf-9 rapidly elicited protein; Found in the gene: LotjaGi1g1v0579300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111891161..111892939) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAAGAAAGAAAGAAAAAGTTAATGAAATAACGAAAAGGAAAAGAAAATAGAATTTGTCAATTTTTAACGAAACCATC AATCAAATTAAAGGAAGATTGAGAAAGAGAGAGAGGGAGGGGCACCGTCGTGAAGTGCCATGGCTCCTGGTGGTCAGGGT ACGAACCTATGCTCATGCATCTTCTTCTACGACGAGCCTGATACCCTCGGCATCCTCGCCTTCGACGCCGCAAAAACCAT GTGCCGCCTCCTCTCCCTCTACAAGTCCCTCACGGAAACCGAGATCAACAACCTCCGCTGCCACGTCATCATCTCCAAAG GTGTGGCCCACCTCAATTCCCGCGACGACTGCTTCCTCCTCAACCTTGCCTGCGCTGAGCGCCTCGAGGATCTCAACCTC GCCGCCGCCGCCGTCTCCCGCCTCGGTCTCCGCACCTCCGACGCAGTGAAAAGTGGCGCGGTGGATATCAAGAAGCTGGA GTTCGGCACGCGGAACGTGGGGAGAGTGATTGAGAAAACGGAGAAACTGGTGTCGGCGACGAGGAAGCTTCACAATGCTT TGGAATCGTTATCGGAGGCGGAGGCTGCGGAGAGGAAGATCCAGCGGTGGAGGCACGTGAGGAGCAGCCACGGGCACGGA CTCAAGGTGAAGGTGGAGAGTTTCAACGACAGGATCGTGTCTCTTAAACGGCAGGTCGAACATTACAAGCAAAATTCGCT TTGGGGCCTCACATTTGACAAGGTTGTCGGTCTCATGGCGAGGATTGTCTTCATTGTCTTCGCTCGGATTTGTTCCGTTT TCGGTTCACTGATTAGTACCGGCATGCCTTCTCGGGAAGATCCTCTGGCGCTCCAGCATGACTCATGCCGGATGGAAAAC CGGGACTTGTACCGGATGAACCTTTGTCTCTTCGAACACGTGAGAAATAATAATAGTGTTTTGAAGTGCAATAGGACGGG GGTGGTTCGGTTTCCCAACCGGCTTCCGCCGTTGTCACGCGGCGGAGAGGTGGTGAAGAATAATGGAGTTTGGCGGCTGG CGCCGGCGTCAACAGTGGGCGGAGCGGGGCTTTCTTGGAGGTACGCGAACGTGATTTTGTTCGTGGACAGGTGCATGCGT TGTACGGTGGCGATTGGGGAAGACGCACGCGCGGCGATGTATGGTTTGTTGCCGGGGAGGTTGAAAGGGAAGGTGAGGGC CAAGTTGAGGAGTGAGTGGTTGAAATGGGATAAGGGTTTGGAGGGAGGAAAGGAAGTGGCGGAGCGGTGGTACGGCTCCG TGGGGGAGGTGATGGAATGGCTGTTGCCGGTGGCGCATGACACAGTGAAGTGGCAGGGTGAAAGGAACATGGAGAAGCAG AAGTTTGAGACGAAGCCCACCGTGCTCTTGTTACAAACGTTGCATTACTCGGAGTTGGAGAAGGTGGAGGAGGCCATTGT GGAGGTGCTGGTAGGGTTGAGTTGTATATATTGGTACCGAAAACAATGATAGTGTACATGTGGTGATTACCATATCTCTG ACACTAATTCTCACCTCAGATTGATGGTTATGTAAAAAATTCCGAACCCATTCACAGCTAAAAACTTAGGTCAGATCATC ATCCACTTGATGACTATATAACCCACCTTTGTTTGGGTAGTACGTAGTTTGATAGGTGTTGAGAGATGAATACAATTCCA AATTTCCAGTCTTCTTTCCTACTAGGTTCTCTAATATATTTATGATTTTTTTACACCACATCTTCTCTATCAAATGCAAA TGTTCCATGTGTGATAAGT
CDS sequence (LotjaGi1g1v0579300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTGGTGGTCAGGGTACGAACCTATGCTCATGCATCTTCTTCTACGACGAGCCTGATACCCTCGGCATCCTCGC CTTCGACGCCGCAAAAACCATGTGCCGCCTCCTCTCCCTCTACAAGTCCCTCACGGAAACCGAGATCAACAACCTCCGCT GCCACGTCATCATCTCCAAAGGTGTGGCCCACCTCAATTCCCGCGACGACTGCTTCCTCCTCAACCTTGCCTGCGCTGAG CGCCTCGAGGATCTCAACCTCGCCGCCGCCGCCGTCTCCCGCCTCGGTCTCCGCACCTCCGACGCAGTGAAAAGTGGCGC GGTGGATATCAAGAAGCTGGAGTTCGGCACGCGGAACGTGGGGAGAGTGATTGAGAAAACGGAGAAACTGGTGTCGGCGA CGAGGAAGCTTCACAATGCTTTGGAATCGTTATCGGAGGCGGAGGCTGCGGAGAGGAAGATCCAGCGGTGGAGGCACGTG AGGAGCAGCCACGGGCACGGACTCAAGGTGAAGGTGGAGAGTTTCAACGACAGGATCGTGTCTCTTAAACGGCAGGTCGA ACATTACAAGCAAAATTCGCTTTGGGGCCTCACATTTGACAAGGTTGTCGGTCTCATGGCGAGGATTGTCTTCATTGTCT TCGCTCGGATTTGTTCCGTTTTCGGTTCACTGATTAGTACCGGCATGCCTTCTCGGGAAGATCCTCTGGCGCTCCAGCAT GACTCATGCCGGATGGAAAACCGGGACTTGTACCGGATGAACCTTTGTCTCTTCGAACACGTGAGAAATAATAATAGTGT TTTGAAGTGCAATAGGACGGGGGTGGTTCGGTTTCCCAACCGGCTTCCGCCGTTGTCACGCGGCGGAGAGGTGGTGAAGA ATAATGGAGTTTGGCGGCTGGCGCCGGCGTCAACAGTGGGCGGAGCGGGGCTTTCTTGGAGGTACGCGAACGTGATTTTG TTCGTGGACAGGTGCATGCGTTGTACGGTGGCGATTGGGGAAGACGCACGCGCGGCGATGTATGGTTTGTTGCCGGGGAG GTTGAAAGGGAAGGTGAGGGCCAAGTTGAGGAGTGAGTGGTTGAAATGGGATAAGGGTTTGGAGGGAGGAAAGGAAGTGG CGGAGCGGTGGTACGGCTCCGTGGGGGAGGTGATGGAATGGCTGTTGCCGGTGGCGCATGACACAGTGAAGTGGCAGGGT GAAAGGAACATGGAGAAGCAGAAGTTTGAGACGAAGCCCACCGTGCTCTTGTTACAAACGTTGCATTACTCGGAGTTGGA GAAGGTGGAGGAGGCCATTGTGGAGGTGCTGGTAGGGTTGAGTTGTATATATTGGTACCGAAAACAATGA
Protein sequence (LotjaGi1g1v0579300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPGGQGTNLCSCIFFYDEPDTLGILAFDAAKTMCRLLSLYKSLTETEINNLRCHVIISKGVAHLNSRDDCFLLNLACAE RLEDLNLAAAAVSRLGLRTSDAVKSGAVDIKKLEFGTRNVGRVIEKTEKLVSATRKLHNALESLSEAEAAERKIQRWRHV RSSHGHGLKVKVESFNDRIVSLKRQVEHYKQNSLWGLTFDKVVGLMARIVFIVFARICSVFGSLISTGMPSREDPLALQH DSCRMENRDLYRMNLCLFEHVRNNNSVLKCNRTGVVRFPNRLPPLSRGGEVVKNNGVWRLAPASTVGGAGLSWRYANVIL FVDRCMRCTVAIGEDARAAMYGLLPGRLKGKVRAKLRSEWLKWDKGLEGGKEVAERWYGSVGEVMEWLLPVAHDTVKWQG ERNMEKQKFETKPTVLLLQTLHYSELEKVEEAIVEVLVGLSCIYWYRKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 449 | 445 | 1.6E-186 | – | |
| PANTHER | 5 | 449 | 445 | 1.6E-186 | – | |
| Pfam | 25 | 80 | 56 | 4.5E-21 | ||
| Coils | 130 | 150 | 21 | - | – | |
| Coils | 172 | 192 | 21 | - | – | |
| Pfam | 305 | 397 | 93 | 4.8E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0579300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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