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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0579700 |
| Transcript ID | LotjaGi1g1v0579700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II 22 kDa protein, chloroplastic; TAIR: AT5G02120.1 one helix protein; Swiss-Prot: sp|O81208|OHP1_ARATH Light-harvesting complex-like protein OHP1, chloroplastic; TrEMBL-Plants: tr|I3SXT6|I3SXT6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0579700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111905106..111911183) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATTAAATCAAGCTATAGCATATTCGGTTATGCATATCAACCGATGTTATGCTTACACGTGTGCAGTGGGTCCGAT TCTTATCTTCTTCCAATTTGAACCACAATGGCAAAAATAATTAGATAAGCGTAGCAGACCAGACTAGAGTGATCGAGAAT CAAGCATAACCATGGCTACCTCATCAATCATATTACGGTCGTCATTGTCATTTTACTCTACAAACCAGCAAGTATATTTG AATAGATCAGCAACTCACAAGAACAAGAACAGGGTTTCCTTCTTCCGTGTCCAAGCAGCAGCAAAGCCCCCTGCCGGTGT ACGTATGCATTTAGTTTTTTGCTTCTTAATTAACCATCCCACTTTGTCATTTATGTTGTCATTTTTTTCAAAAAATATTG TTAATCATGAAGAAGTTGAGAATCTCTCTTTTTTTTTCAGGTAGAATTTCCAAAAGTACAGCCGCAATTTAAAGCTCCAT TTCTTGGGTTCACAAAGACAGCAGAAGTATGGAACTCTAGAGCTTGCATGATTGGACTCATTGGAACTTTCATTGTAGAG CTTGTGAGTATTTTAAGTTTTTTAATTGATAAAATTGTGGACGTTTATAGTGGAATTAATTAAGAAAAAGTGGTTAAGAG AGCTGGAAATTGGTTTATTCTTGTTCCTTTGTATGATCGATTGTGGTATGTTTTGCAGATAATAAACAAGGGAATACTTC AGGTGATTGGAGTTGAGATTGGGAAAGGCCTTAATCTTCCTCTTTGAGCATTCAATTTAGGTCTGCTCGTAACTATTGTA AGAGTCAATTCTAAGTGTCTTTTATTTAGTTATGATTTTAAGAAAAAAATTTCCATTTTTAGTCATTTGACAAAATCTAG TCTGTGTATTCCAACATCTTGTTGATATATATGAATTGGGAGATGTTCTTGGGTTGGATTAAGCTTTGCCAATTCTATGG TATCCTAAATTGCTTGGTTTCATACGCGGAAGTCGATTAAAGGTTTGTTAACCTATTAGCAAATTACCACATTTTAATTT TCTAGTTTATAATAGTTCTATGCTGCTGAAGTTGGTCTCTGTTGGGGTTGGAAACTTCAAGGATGGCACATGGAGACCTG GAAAAGAGCCATAATGGTTAATATGGCTTAACTCTAAGCAAGATTAATCTGTGTTGTATGTAAGTTTTGGAAGCCTAACC AGGCTCACTCATGCTCAACTTGTTGAACTAGCTCATGGGCTTGAAAATTCTGGTCATAAACTTCATCTGGGTTATTCAAA AAAAAGGATGCAAATGAGGGTGTAGATAGTTTACTACAAGATTTTGAGCAAAGGATACAAGAAAGCAAAAAAGGGTTGCA TCATGTGGAACTGAGCACCACAGCTTCTCAAATTGGCCCCACCCTGCTATTCAAGGAATTGTGACTCGCTGCGGTTGGAA CTCCATTCATGAAAGCTTGAATGCTGGTTTGCCAATGATCACAAGGTCCATGTTTGCATAACAATTTTACAATGAGAAAC AGTTTTTTTTTTATTTGACAAATCTAAAAACTGTTTTCAAAGAACACAACTAAACAGAGCCTTAATTTCTAGCCAATATA GAACTTCAAGATCAAGTTGCCACCTCAAGTGTACCTACTACCTACCTGCATGACATTTTAACTAGAAGAAACATTGTTGA CAAAATTAGTCCATTTCTTGTCATGTACCAGTCCAGCCTGACCAGACAGCAGCAAGACCAGAAGAAAAGGTGGATCAATT TACAGGAGCCTACTAATACGAGCATCTATCACCCAAACTTTATTTGATTCTGTATTTCCCAGAGCATCATCTAGAGACAT CCTGTGGTTTCTCCATATAGCCTCAGCAAAGTTCTTCATCTTCTCTCCTTCATCCTTTCTATTTTCTTGGATGCTAAGTA CTTCAGAATATGCACCTATAATATTATGAAACCAGTCAACAGAGTGAGCCTTTAAATTGAACAACACAACTTTACTATAA TCCCCGTCATGAATGTGCTTGATATCAACCAACTACGGAGGGATTAATTCAAGTCACTCATTCATCATACAACACCAAGA TCTGAACTGCTTTAGTTTCCCATTACGCAAGTGCCTATTGTAGGCACTCCATTTAACATTAAACAGATATGACACCGCAT GCTTAATGTTAGAAATGCATCTATCTCTAACACTCAAGATTCTACATTCTAGATTTAAGAAATCATCAGGTTGTTTGTAC ATTCATCTTGACACACATAACTACCACTCCTTGATAACAGTCAATTTCTATATATTAAAATAAACGCTCCTTGATCATGT TGTCAATCATAGAATATAGAGGATCAAAGAATCCATCATACCTCTTGCAAGAGCTGCTATGTCACTTCTATCTACCAATG GTACCGCACCTACACAAAGAAAGTTATGCTTCAATAAGCATTCACTGCATAGTTATCAATCCAAGATAGCTGCCAGGCCG ATAATGCTATAGTGAGATGACCGAAGTGAGGTTACAAGAAAAAACATGAATCGCAACTTGCAACAGAGCTGTGAATAGAG TAAGAAGTTAACTGGAAAACGAGAGTGTGGTTAAGTAATAGGGTATGCTGGTGAACATTAGGAGTGATGGTAATAGCTGG AAATTACATCAGCAATCAGTAGGCTTGAACTCATGAGGGCGGACAAGACAAACAGAGGCTTGCATAAGAGCCAATTATGG TTGGAAATGAAAAAATGGCTTCCAAATTTTCTATGCCAAAAATGTAAGAGAATGATGAAAATATAAATAAATAAAAAATA GGGTTGGAAAGTGAAAATGGGAGAAAACTGAGGCTTTAACCTCCATCAGCCATGGAGTCAATATTGGCATGATCGGCAAT GAACGGACATGATTTGAGTTGTGTGAAACTATGGAGCATTATAAAAACACTATGTAAACTGGGATGTGTAGCAGCCTCCA ACTGCAACGCATTGCTATCTCCGTGATTGATAACCATGATTCATTACGTGTAAAACTCTTGTAGACAATACATGGGACAT TGGGAATCAAATGATACAATACCTTCCGAATCAGTTTCACCTGGTGGAACCTTCAGAAGATCTGTCACTCTTCTATAGAG ACCCTGTCAGTGATTTTACTATATTAATTACAGTTTTAATTGCAAAAAAACTGCTGGTGAACTACTAGGCATAAGTGTAG CAATGCAAAAACAATATAATACATGCAAAAGATTTGTTATCAGTCAGGAGATCACACTAGTCAAGGAAGTTAAAAATTGA CATAAATACTTAGTAGCCTCGAAACTCATTTTCAAAAGATTTCAATATTTTTACTGAAAACATTGTTACTTGGATGTCAC ATTAGACGGAGCAAGGTCAATCAGTTTGTTAGGCACACATCTCGGCATAGGCAAGTTAAAAATTGATCTTGTAAAGCTGG AGCAGAGAACATTTTTATAGCATCAGAGGTTTAGGACAGGAACTAAACCAAATTGTAGACATCTAGATGCATCTCTTACT TATGACATAGCAATCATCCTTCTTTGCTACTTTTAGGAAAAAGGAAAAGATTAAAAAAGGTGGCTTCACAAGCGTCCCAA CTACTAACCTCTTGCACCAAAATTGAACTTGAATGCTCCTGCATTGCTTTACGCCTATACATGAGAGCTATACTTGTTAA GACAACACCCACCTTGGGATGACGATCACCTTCAACAAATACAGAGTAATAAGAAATTACCAAGAAACACAAAATGTCAT TACCAGGCTCAGAGATAAATGCAATATTGCAATATGAATTTCTAAATTCAGATTTTGCAACAGATCGAAAGAATAGACAA GATACCATAGGTTTCCTCAGCCTGATTTAAAGCCTTTGTCAAATGCTGTTCTGCGTTACCAAAGTTACTAAAACAACAGT TATTAGTGATATACTACCTAAGGCAACATAAAAAGGAAGAGTAAGGTGTGGCTAAGGAAAACCATACCCCAAATGTGACT CAAGCTGTCCTAAAGCACACATGGCCCCCATCATTAAACCCTCCAAGTTCATGTTACCAGCTCCTAAGTATGGATTGCCA CTATTTTTTATTGTAGTGGCTCCTTGTATGATGTTCTGGTAAACCTCTTTTGCCATTGAATAATTGTGCTTTGTTTGAAG GAATTCCCCATATGATAGAGCAGCAGAGCCTACAAAGCCATAAATCAATTTGGTGTCGAACAACGTCTTCTAGCTAGACA GTAGCAGATGAATAGAAAGATACCATCACATAGGGTGCTGAGCAGAGATTTGTCAAAGAAGGCTTCAGCTGCACCAGGTA CGTAATAACTTATAAGCACACATCACCAATCTTAACAACCAAATAGACATCTTATCAGCACTACCTGACTCAATATTGCC CTTGACAAGTTCAATAAGCCCTTTCAGTGCTTTAGCACGAACCTTTAGAGCCTCAGAGTCTTCAGCATTCTGTTTCTCTA GGAGCTCTATGCATTTGTCCCCCACTGCTGATGCCATATCATCCTATATATGAAAATCTGAGTAAACATGAATGGTTCTG GGAAAAGAAACAGCCAAATGTTTTACAAATGACTTGCAGATACCAACCTGCCCCAACTCGAGATGAAGCCCAGCCTCGGC TTCAAAGGCAGCAACTATAACAAGAAACCAAGATAGAACTCAGAATCATTGATGAAAAATCATATTGAAAGAGAATAAAT AAAACCAAAACAAATGTTGTAATCAATAAAAAGGGTAACAATAATTTACCTCTAACCCCCAACAAAGAATTGGTCAATTC TTGAACACTCTGGAGCTTCTCTATTGCATCACCATACTCTCCTCTAAGAAAAGTAAAGGGAAAAATAGTCCCTATGAGTT TAAACTATCATCCACAAAATTAAGCCCCAATATGAGTATTAGAACACTAATGAAACTAAATGACCATGAAGAAAGAACCT TTCAGACAACAAAGTGGACCAAGCAAGCAAAGCAATTCCTTTCGAATTCTCATGTTGTGGGTCTTCGCCCTCAGTTAACT CAGTTGTAACGCAATGCTTCAACACCAGCATACCTAGACCGTACGACCCAACTATTCACAGAAAACCACAACAAAAAAAC CCAAAAAGATGTCAACTTTGGCAAAAAAACACAAACGGGTAATCGAGAAACACAGTTTCTGACCCATCACCTGATTTGTC AGTCCTAGCTTGTTTCATTGCGTAGTTGATCATACGAACAGCATCAGGGACTGCCATGTTTTTGTCCAACTCCAAGCCAT TACTAAATGACCTGAACGATGAAGCTGCAAGGGGAGAAGGTCTGGTGCAGGAAATTGGAGATGGTTTTACTGCGAAAGCG GCAATAGCAGTGGAAGAACAAGAACCTCTTGATGACAACTTTGCTGCTACGCGAAACATAGTAGTTGCTTCAGGGTAGTG GCGGAGCCAGGATTTTTGTAGAGCCTGAGCAATTGGGCAAGGTTAAGCCTAAGTGTGTAATTTGAAAACCATAATCGAAT ATTAAGATACACATTCCTAAGAACTTGAAAAATGCCATACATTTCAAGCTTATGCACGTATGTCATAAGCAGTAGACAGC AGCAAGAATCATTCATTTTTAGGCAAGTACTCACCAAAGATCAAAATTATGCCCATTATGTTATCTGCACTGTACCTAAT ACTAGTTTGTGCATAACAGTAGCATGAATGCATTTTATAACAAAAATCAACATGATACAGTTTTTCGTTTGTACAGTTGT GGTAAATTTTCAATTCATATATAAAATTATGAGAAAGGAATGCAATTTTGCCAAAAGAGTGAGTTTAGTCCTTACTCACC AAGTATGCAGGACGAGTGAACGAAGGTCGACTGCGGTACCCCAATCAACGGCGGTGCAGCGCCTCTGGGTCCGAGAGAAA GAGAGTCTGAGAGTGAGAGAATGAGAACGAGGGTTTTTTTTCCTTCTTCTGAATAAGTTATGTGTATGGGGGTGGGTTCT TTGTTATTTTGCGAATTGTGAAGAATCTTGCGTATTCCCAATGCTTCTTTTATTGCTGACAAATAGCTTGAATTTGCA
CDS sequence (LotjaGi1g1v0579700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCTCATCAATCATATTACGGTCGTCATTGTCATTTTACTCTACAAACCAGCAAGTATATTTGAATAGATCAGC AACTCACAAGAACAAGAACAGGGTTTCCTTCTTCCGTGTCCAAGCAGCAGCAAAGCCCCCTGCCGGTGTAGAATTTCCAA AAGTACAGCCGCAATTTAAAGCTCCATTTCTTGGGTTCACAAAGACAGCAGAAGTATGGAACTCTAGAGCTTGCATGATT GGACTCATTGGAACTTTCATTGTAGAGCTTATAATAAACAAGGGAATACTTCAGGTGATTGGAGTTGAGATTGGGAAAGG CCTTAATCTTCCTCTTTGA
Protein sequence (LotjaGi1g1v0579700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSSIILRSSLSFYSTNQQVYLNRSATHKNKNRVSFFRVQAAAKPPAGVEFPKVQPQFKAPFLGFTKTAEVWNSRACMI GLIGTFIVELIINKGILQVIGVEIGKGLNLPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 112 | 112 | 7.2E-42 | – | |
| PANTHER | 1 | 112 | 112 | 7.2E-42 | – | |
| SUPERFAMILY | 43 | 102 | 60 | 5.36E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0579700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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