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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SSF103511
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 81 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.034s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0008449.1
n.a. One-helix protein [Medicago truncatula] gi|357443565|ref|XP_003592060.1| chr0 3405301 3408374 +
1 domain prediction
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Lj0g3v0021579.1
n.a. PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cicer arietinum] gi|502147415|ref|XP_004506774.1| chr0 8730851 8733064 -
1 domain prediction
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Lj0g3v0227359.1
n.a. PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Cicer arietinum] gi|502084262|ref|XP_004487657.1| chr0 117443828 117444844 -
1 domain prediction
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Lj0g3v0227369.1
n.a. PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Vitis vinifera] gi|225461315|ref|XP_002284493.1| chr0 117444068 117446169 -
1 domain prediction
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Lj0g3v0260539.1
n.a. n.a. chr0 135321422 135335302 -
1 domain prediction
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Lj0g3v0260539.2
n.a. n.a. chr0 135332601 135335322 -
1 domain prediction
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Lj0g3v0309549.1
n.a. PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform X2 [Cicer arietinum] gi|502086073|ref|XP_004488100.1| chr0 161604010 161605190 +
1 domain prediction
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Lj1g3v0112820.1
n.a. Early light inducible protein [Medicago truncatula] gi|358347178|ref|XP_003637637.1| chr1 1142081 1146424 -
1 domain prediction
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Lj1g3v0514170.1
n.a. PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Glycine max] gi|356516812|ref|XP_003527087.1| chr1 6541038 6542677 -
1 domain prediction
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Lj1g3v0816020.1
n.a. Photosystem II 22 kDa protein [Medicago truncatula] gi|357463499|ref|XP_003602031.1| chr1 10721810 10726648 -
1 domain prediction
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Lj1g3v0816020.6
n.a. Photosystem II 22 kDa protein [Medicago truncatula] gi|357463499|ref|XP_003602031.1| chr1 10724336 10726648 -
1 domain prediction
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Lj1g3v0948600.1
n.a. PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like [Glycine max] gi|356501755|ref|XP_003519689.1| chr1 11914907 11917182 -
1 domain prediction
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Lj1g3v1380940.1
n.a. PREDICTED: ferrochelatase-2, chloroplastic-like [Cicer arietinum] gi|502139638|ref|XP_004503842.1| chr1 16717390 16723189 -
1 domain prediction
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Lj1g3v1650110.1
n.a. Chlorophyll a-b binding protein [Medicago truncatula] gi|357465507|ref|XP_003603038.1| chr1 19767793 19769691 -
1 domain prediction
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Lj1g3v3444150.1
n.a. HLIP/One helix protein [Populus trichocarpa] gi|224090769|ref|XP_002309074.1| chr1 39937631 39942106 +
1 domain prediction
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Lj2g3v0509060.1
n.a. PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cicer arietinum] gi|502162710|ref|XP_004512591.1| chr2 6861489 6864787 -
1 domain prediction
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Lj2g3v3337560.1
n.a. Chlorophyll a/b binding protein [Medicago truncatula] gi|357495319|ref|XP_003617948.1| chr2 42382011 42384724 +
1 domain prediction
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Lj3g3v0681380.1
n.a. PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like [Vitis vinifera] gi|225461315|ref|XP_002284493.1| chr3 7393354 7395487 -
1 domain prediction
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Lj3g3v2531180.1
n.a. PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform 1 [Glycine max] gi|356559462|ref|XP_003548018.1| chr3 31067285 31069550 +
1 domain prediction
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Lj4g3v1212380.1
n.a. light harvesting-like protein 3 [Populus trichocarpa] gi|224126625|ref|XP_002329601.1| chr4 17951541 17954589 -
1 domain prediction
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Lj4g3v2023910.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508784362|gb|EOY31618.1| chr4 28242449 28245566 +
1 domain prediction
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Lj4g3v2789350.1
n.a. stress enhanced protein 2 [Populus trichocarpa] gi|224081248|ref|XP_002306351.1| chr4 37422632 37423754 -
1 domain prediction
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Lj4g3v2858450.1
n.a. Ferrochelatase [Medicago truncatula] gi|357520255|ref|XP_003630416.1| chr4 38193580 38199293 -
1 domain prediction
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Lj5g3v0279160.1
n.a. PREDICTED: chlorophyll a-b binding protein type 1 member F3, chloroplastic-like isoform X2 [Cicer arietinum] gi|502126497|ref|XP_004499329.1| chr5 2336856 2347051 +
1 domain prediction
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Lj5g3v0279160.2
n.a. PREDICTED: chlorophyll a-b binding protein type 1 member F3, chloroplastic-like isoform X2 [Cicer arietinum] gi|502126497|ref|XP_004499329.1| chr5 2336943 2347051 +
1 domain prediction
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Lj5g3v0279160.3
n.a. PREDICTED: chlorophyll a-b binding protein type 1 member F3, chloroplastic-like isoform X2 [Cicer arietinum] gi|502126497|ref|XP_004499329.1| chr5 2336943 2347051 +
1 domain prediction
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Lj5g3v2045360.1
n.a. Early light inducible protein [Medicago truncatula] gi|358347178|ref|XP_003637637.1| chr5 29092264 29092691 +
1 domain prediction
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Lj5g3v2113490.1
n.a. PREDICTED: ADP-ribosylation factor 1-like [Fragaria vesca subsp]. vesca] gi|470140444|ref|XP_004305950.1| chr5 30461313 30463344 +
1 domain prediction
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Lj5g3v2288980.1
n.a. FKBP-type peptidyl-prolyl cis-trans isomerase [Theobroma cacao] gi|508726519|gb|EOY18416.1| chr5 33446990 33447921 +
1 domain prediction
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Lj6g3v0524040.1
n.a. PREDICTED: chlorophyll a-b binding protein CP29.3, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470143965|ref|XP_004307637.1| chr6 5252445 5254730 +
1 domain prediction
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Lj6g3v0524040.2
n.a. PREDICTED: chlorophyll a-b binding protein CP29.3, chloroplastic-like [Glycine max] gi|356568441|ref|XP_003552419.1| chr6 5252673 5254730 +
1 domain prediction
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Lj6g3v1176180.1
n.a. PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like isoform X2 [Cicer arietinum] gi|502086073|ref|XP_004488100.1| chr6 14335466 14337441 +
1 domain prediction
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LotjaGi1g1v0009300.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT2G05100.1 photosystem II light harvesting complex protein 2.1; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300 LjG1.1_chr1 1204862 1210225 -
1 domain prediction
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LotjaGi1g1v0009300.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G27690.2 photosystem II light harvesting complex protein 2.3; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300 LjG1.1_chr1 1207643 1208040 -
1 domain prediction
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LotjaGi1g1v0009300.3
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G27690.2 photosystem II light harvesting complex protein 2.3; Swiss-Prot: sp|P27520|CB215_PEA Chlorophyll a-b binding protein 215, chloroplastic; TrEMBL-Plants: tr|I3T0E0|I3T0E0_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0009300 LjG1.1_chr1 1207643 1208592 -
1 domain prediction
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LotjaGi1g1v0172100.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G61520.1 PSI type III chlorophyll a/b-binding protein; Swiss-Prot: sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplastic; TrEMBL-Plants: tr|I1JJU8|I1JJU8_SOYBN Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0172100 LjG1.1_chr1 32772444 32775247 -
1 domain prediction
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LotjaGi1g1v0220700.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4; Swiss-Prot: sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic; TrEMBL-Plants: tr|I3S9Y6|I3S9Y6_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0220700 LjG1.1_chr1 49055550 49059482 +
1 domain prediction
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LotjaGi1g1v0260800.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G44575.1 Chlorophyll A-B binding family protein; Swiss-Prot: sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic; TrEMBL-Plants: tr|I3SSA4|I3SSA4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0260800 LjG1.1_chr1 63882300 63885391 -
1 domain prediction
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LotjaGi1g1v0328100.1
n.a. Ferrochelatase; TAIR: AT2G30390.1 ferrochelatase 2; Swiss-Prot: sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic; TrEMBL-Plants: tr|V7AZZ3|V7AZZ3_PHAVU Ferrochelatase; Found in the gene: LotjaGi1g1v0328100 LjG1.1_chr1 78274342 78280103 -
1 domain prediction
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LotjaGi1g1v0328100.2
n.a. Ferrochelatase; TAIR: AT2G30390.1 ferrochelatase 2; Swiss-Prot: sp|Q0DIV0|HEMH2_ORYSJ Ferrochelatase-2, chloroplastic; TrEMBL-Plants: tr|V7AZZ3|V7AZZ3_PHAVU Ferrochelatase; Found in the gene: LotjaGi1g1v0328100 LjG1.1_chr1 78274776 78277840 -
1 domain prediction
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LotjaGi1g1v0328100.3
n.a. Ferrochelatase; TAIR: AT2G30390.1 ferrochelatase 2; Swiss-Prot: sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic; TrEMBL-Plants: tr|I1KBS4|I1KBS4_SOYBN Ferrochelatase; Found in the gene: LotjaGi1g1v0328100 LjG1.1_chr1 78274776 78279080 -
1 domain prediction
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LotjaGi1g1v0328100.4
n.a. Ferrochelatase; TAIR: AT2G30390.1 ferrochelatase 2; Swiss-Prot: sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic; TrEMBL-Plants: tr|I1KBS4|I1KBS4_SOYBN Ferrochelatase; Found in the gene: LotjaGi1g1v0328100 LjG1.1_chr1 78274776 78279085 -
1 domain prediction
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LotjaGi1g1v0328100.5
n.a. Ferrochelatase; TAIR: AT2G30390.1 ferrochelatase 2; Swiss-Prot: sp|O04921|HEMH2_ARATH Ferrochelatase-2, chloroplastic; TrEMBL-Plants: tr|I1KBS4|I1KBS4_SOYBN Ferrochelatase; Found in the gene: LotjaGi1g1v0328100 LjG1.1_chr1 78274776 78279090 -
1 domain prediction
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LotjaGi1g1v0354800.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G45474.1 photosystem I light harvesting complex protein 5; Swiss-Prot: sp|Q9C639|LHCA5_ARATH Photosystem I chlorophyll a/b-binding protein 5, chloroplastic; TrEMBL-Plants: tr|I3T4S4|I3T4S4_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi1g1v0354800 LjG1.1_chr1 82639070 82647165 -
1 domain prediction
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LotjaGi1g1v0579700.1
n.a. Photosystem II 22 kDa protein, chloroplastic; TAIR: AT5G02120.1 one helix protein; Swiss-Prot: sp|O81208|OHP1_ARATH Light-harvesting complex-like protein OHP1, chloroplastic; TrEMBL-Plants: tr|I3SXT6|I3SXT6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0579700 LjG1.1_chr1 111905106 111911183 +
1 domain prediction
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LotjaGi2g1v0103000.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G54890.1 chlorophyll a-b binding protein 6; Swiss-Prot: sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chloroplastic; TrEMBL-Plants: tr|I3S050|I3S050_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0103000 LjG1.1_chr2 34618798 34622054 +
1 domain prediction
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LotjaGi2g1v0114800.1
n.a. ONE-HELIX protein 2; TAIR: AT1G34000.1 one-helix protein 2; Swiss-Prot: sp|Q9FEC1|OHP2_ARATH Light-harvesting complex-like protein OHP2, chloroplastic; TrEMBL-Plants: tr|I1NH47|I1NH47_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0114800 LjG1.1_chr2 42294783 42298392 -
1 domain prediction
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LotjaGi2g1v0118900_LC.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A4; Swiss-Prot: sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloroplastic; TrEMBL-Plants: tr|I3S9Y6|I3S9Y6_LOTJA Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0118900_LC LjG1.1_chr2 43531430 43532356 +
1 domain prediction
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LotjaGi2g1v0128900.1
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chloroplastic; TrEMBL-Plants: tr|A0A089WZX0|A0A089WZX0_KALFE Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0128900 LjG1.1_chr2 47119559 47120672 -
1 domain prediction
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LotjaGi2g1v0128900.2
n.a. Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G29930.1 chlorophyll A/B binding protein 1; Swiss-Prot: sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic; TrEMBL-Plants: tr|A0A089WZX0|A0A089WZX0_KALFE Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi2g1v0128900 LjG1.1_chr2 47119678 47120415 -
1 domain prediction
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