Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0580200 |
| Transcript ID | LotjaGi1g1v0580200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear pore complex protein Nup54; TAIR: AT1G24310.1 nuclear pore complex protein; Swiss-Prot: sp|Q8GYF7|NUP54_ARATH Nuclear pore complex protein NUP54; TrEMBL-Plants: tr|A0A0B2QWA7|A0A0B2QWA7_GLYSO Nuclear pore complex protein Nup54; Found in the gene: LotjaGi1g1v0580200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:111964724..111970029) extracted from Lotus japonicus Gifu genome v1.2.
TGGTAGCTTTTAAACATGGGTTGAGACCGGGATCACTAAACAATGACTTAACAAGGCAACCTGCATAGGACATGAATTTA TCATGGTGGAGGAAGAAGACACGCATAAGGAGCGTGAGGTGTGGCGACAAGACTTGGAGGCTAGATGTAATCACCAAGCT CCAAACACACAAACAAGACCGCCTAGAGAGTCGAGGCGAATTCAGCCACCGCAACAACCCAAAGCAGGGCCCTATCAGTA ACGACAAGTACCATAGGGCAAGACCTGGAATAGGCCAACCCAGGTGACCGCAAAACAACAACCCACCCACTTAATACAAC TTTTGTGTAAAATTCTGCGAGGTGTAAGTCACACCAACCTTGTTCAGTATCCACATTTGCCAAGGTGGCCGCCTCCGAAC GTGGATACATCGAAGTGGTGTGACTATCATAAAGAGCTAGGGCTTTCCCTGGACTGCGTACACTAAGCGCCGCACACACA GCAGAGCAGAACAGAGCACCATGTTTGGCGCTCAACCTTCTTCTTCTCCTTCTCCTTCTCTCTTCGGCACCCCTTCTGCT TCAACCCCAGCATTCGGCACCCCGTCTTCAACTCCAGCCTTTGGTACCCCATCTTCAACCCCAGCATTTGGTTCTTCCCT TTTCTCCTCACCTTTTACTCCTCAGCAAACCCCGCTTTTTCAACAACAACAACAACCCTCTACTGGTTTTTCCTTTCAGA ATTCTCCCGCACCACAACAGCAACAACAACCCACTCCATTCCCCAATGCTCAATTGACTACTCAGATGGCTAACGTTGCT CCCGTTCCTTACTCTCTCCCCGATCGCGATGTTCAAGCAATTGTTGATGCTTACAAGGAAGATCCTGGAAATCCCAAATT CGCTTTTAAGGTCTCCTCTCACCGTCTTTATTTTCAAATTTTAAACTTTTTATGTTTAGAATTGTACCCTTTTCATGTTT TCTAAGATTGGTTTTCTGTGTGATTTTGTGCAGCATTTGTTATTCAGTGTAACAGAACCACAGTTTAGGATGAAGCCTGC TGGTATTTCAGATGTAAGTTCATATTTTGCCACTACTAAACTCTTTAGCTTCTAGTTAGTTAGTTTCTGGCTAATTGTGG GAAATAGTTTTTGTTGCTAGATCATGTGGGCAGAGGCTATGGGGAAGCTTGAGGGGATGGAAAGTGCTGATAGAGAACGT CTGTGGCCGCAAGTTGTTCAGGGTTTTAAGGATCTTTCCCAACGCCTTAAGGTAAACTCTATTTGCTTTATTAAATTAGG CTTTATTTGGATTCGTAGAAATGGATTGGATGAAGGGGATTTAAATTGAAATCAAATCACTCTTTAGATCATTTAAAGTA GGGTAGAGCGGAATGAACATGCATCCACAAGTGGTCTTACTATGGCAAAAGGGTATAAGAGAAGAAATATATTGGGGAAT TGTTTTCTTTTGGGGAGATAAAGATTGAGATTGATATTGTGTAGCAAACCTGGTTAACAAACTTCAGGATTAGATCCACA GAATTTACTCCCAGTGAATGTTATTAACATATGAATTTTGGCCACATCAGTTTGTGGTGGAATAAGGTGCTTTGGATCCT CTAAGGGCTAAGCAGCCGAGGATGGGGTTTTGTTCAAGGTGCGGACGCAAAGGAGCATATTGTAAAGTTACAATGGCAAA CTGATTCCTTATTTGTCGCAGATAATTTGGCTGGAAACAAAATGGAGGAAATTGTGACTGCCTACAAACTTGTCGAGTAT CTAGACTACTCATGTTTGTATGGTGATATTATGTTCAAGGCGGTTCAAAAACAGTGTGGTTATTTGGTTACCAAGCTGAT AAAGAAAAAACAAAGTCATTGGATGTCTTGATTGCCAATGCTACTTCTTAAGATTGGGAACCAAATGGGTTATCAGGATG GGTTCTCTGATGACTGTTTCCTGCACTGTATTGGCAGTGTTATTGGTTTCAAAGATGGGGATGTGGAGGTGAAATGGACT ACTAGTATTTCACAACCAAGGTTATGCCTTATGCAATTTTTCGGATTGAAGAACATGAAGATTCAACTGTAACAAAGAAA TGTTGAGAAGTTAACTTATGAAATGATTGAGCAAGGATGTCTACCTATTATCAGAAGGGAATGGACTTGATAAATGTTGA TGGTAGTAGAGAGAATTGTGAAAAGTATCTTGGAGGTTGTATCATTGTTTTGCTACAACTTGGTCCACATCTTTTCAATA ATGGGATCCAGGTGGTGGTGGGTTTCATAGTCGTTTTTTCCAGATTGTGCACGGGTGTTGATTACATGCAAGCTGTTGCC AAATTGACAGCACATTTTGGGGCAGCAAACTGCGTTCAAGGAGCATTTCCTCACTCCATCTTTGAGTTCAACGATGTTTT AGAGGAAGGGAGAGATGATGTTGACCAACTGCCTTGCTGATGTGCAGTGGGCTAACACTGAGAGTGAAGTAGGCACATGG TGTGTGAAGGAGAGAGAATGTATGTGAGGGGGTTATAACCGTGTGAAGAGAGAGGGGGGGGGGGAGAGACTGAGGAAAAC CTGAGTTAGGAATTGGGAGAGAAATGCTTCCTCAAGTTTGCTTGTATCAGTTTTCTTTCTTCTCGTATTTTTCCTAAACT GGATCTGAGTTCATCTCAGAGATCCAGAACTATCCCTACAATTGCATTTCAGTTCTATTTCCTTTTCTACATTTTTCTGG TACCTAAATTATGGCACTACAGCACCTATGCTGGCAGTCCTCAATTTTGAGAAGACCTTTGTTGTTGAGACAGATGCGTC CAGAAAGGGAATTGGAACAGTCATGATGCAAATGGGAACCAGTGGAGTCAACAGTTATAGATAGACCTCAAAGTAAGTGG CTTTATAAATAGGAATTAATGGTGTGGTGTTTGCAGTTCAGAAATGGAGGCATTACTGGTTGGAGAATCATTTTTTGGGT GCACAAAGACAAGAAAAGCCTCTAATGTTTGGCTGAACAGAGAATAATGGGAGAGGGGCATCGAAATGGGTCTCTAAACT GCCAGGCTTTGATATTATGAACAATATAAGCTAGGTGTTGAAAATAAGGAAGCTAGTGCTCTCTCTAGGATAGTGCAGTT TTCAGCTGTCAGGTTTAGTTCTATGAATGGGATGACTTAGAAATGGAGATTTTGGCTAATGTCGAATTAAGAGGAATTGT GCAGGATCTGCTGAGGGATCCAAATGCTCTGATACCATGTTTACACCGGTGGACAGTGGGTCCTCCAGGAATCACAGATT AGGATTAGGGTTGCCTTTTTAGCCTCTGATAAGAAATCAAGAAGCATTGAAATGAATTCATGTGTCTAAACCACACAATG GAGTGTGTTATATATAATAGGTACAATAAATGCATAATAGCATTGTTTCTCTATGTACAGTATGTTACATAATACATAGT TTCATTAATTACAATATATCCTATCTTTTTACATTATTTCTAAAAGGTTAAAAGAGAAAATAGAGTAAACTGGAAAATAT CAGATGAAGAAGTGGGTCCCAACAGCAAAGAAGAAGAAGGCGGAAATGGAAGGAACAGTCCACAGGTTACACAAATATGC ACGTATTTTAGGCAAAAGGGAATTTCCCTTCATAAATCCCACGTTCTCAGTTTCCCAGGAATATTTGATTGCCACCCCCT ATGCCGGGATAGACAACAGCATATACGTGGGAAAATCGTATTGCCAGAAATATCTTTTACCTGGGTGTATATTTTTATAA CCTGCTACCAAATGCAGGAATCTTCTTTCCCAGACCCATATTCCCAAGAATCTTTTTTCAATCGCTCATCAAACTCCCAT TTTGCATTGATTTAGGCTTTTCTGAATTGATCACTAACTCATTACTTGGTAGAGATATTTTAATACCAGAGTAGTAATGC TTTAAATATTGAATGTATTGATCTGTATCCACCAGTGAGTATTTGAGGCAAAAAAAGACAAATCTACTAAATTCTGATAT TGACATTTTTCATATCTGAGCCTCTGTGGGATACAGTTTGACTCACGTTCTATTGCAGATCCAAGATGAAGTCATAGCTT CTGATGCAGAGAGGTTACGTGTAACCCAGAGCAATGTGAAAATGGTATTGCTCTTCCTTTACTCTCCCAAAAGCAGTACT GACTTTATTATTTTACTTTGATGACTTATCTTTCCAATTGTCCAATGCTTTTGGCAGCTCCAAAGACATTTTCAAGCTGA TACTCTACCTTGGATTCAAAGGCTGAAACAGAAAGAACAAATTCTCCAGCAACGTCTTTTAAGAGTAAGGACAGCTGCTG TGTGTTTTGCATTTCTTGTTCTATCTGGTGCTCCCCAATTAGCAGCATTAGTTTATTGGTAAAAATCATAAACACATCGT GGGGTTGGATTCCTTAATTCCTTGCTCTTCTTGTGTTGTGATTGAAGGTAATGCGCATAGTGGAGGCACTCGAGGGAAAA GGATGCCGTATACCCCTGACAAAAGGGGAAGCTGAACTTGCTGAGAAATTAGCCACAATAACTAGACAGGTAAAAATTTT TGTCTGCCTCCTCCTGCTTTGTTGTTTGCTTATATGCAAGTGTAACTAACATGAAAGAAAATATCTTTTCAGCTGAAAGG ATCCGGAGCGGAACTCACTAGGAGGGTACAAAATCTATTAACTGTATCTCGTGTTCAGGCTAAGAGCAATGGATTTGGTG GCCCAGTTTATCTTCCGGGATCAACAAAAATTCATGAACAGAGTCTGACTGACCTGCAGGAGGTAAGATTGCTTAACATC TTTGTTTGCTGTTCTTTTTAAACTACGTAAGTGGGATAACACATATATACCTTGTGCAAGCAGGTCTTACAGCAGCAAAT GGAGGCCATAGCAAGACTTGGAAGTGTTCTGAAGCGAGATGTACGGGATATGGAGATTATGATTGCTGAGGACACAGGAG CAACCGAAAACGGGAATTGAATCTCAACTTGCTTAAGAAAATCTCAGTTATTCCTGCTTCATATTTGCTCTTGAATTTTT CTAATCTTCCGTGATTTGCTAATGTAGTGAGCACATTGATAGTACATTTGTGCTGTTTGGAACTTCTTATGTTCTTCAAG GGTTAAAGGAATAGGTTGCTAAGTCTATGTTTGGTGTAAAATATAGAATCGAATAGAACGTAATACAAAGTTTATTCGGT ATGTTGAAAACAGAATTCAGCAAGACAAGAAAGCATATAGTACTAGTACATGCTCAATTCCTCTACTCTTTCAGATTTAG CCATGTAATATTTTTTAGAAAATCTC
CDS sequence (LotjaGi1g1v0580200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGCGCTCAACCTTCTTCTTCTCCTTCTCCTTCTCTCTTCGGCACCCCTTCTGCTTCAACCCCAGCATTCGGCAC CCCGTCTTCAACTCCAGCCTTTGGTACCCCATCTTCAACCCCAGCATTTGGTTCTTCCCTTTTCTCCTCACCTTTTACTC CTCAGCAAACCCCGCTTTTTCAACAACAACAACAACCCTCTACTGGTTTTTCCTTTCAGAATTCTCCCGCACCACAACAG CAACAACAACCCACTCCATTCCCCAATGCTCAATTGACTACTCAGATGGCTAACGTTGCTCCCGTTCCTTACTCTCTCCC CGATCGCGATGTTCAAGCAATTGTTGATGCTTACAAGGAAGATCCTGGAAATCCCAAATTCGCTTTTAAGCATTTGTTAT TCAGTGTAACAGAACCACAGTTTAGGATGAAGCCTGCTGGTATTTCAGATATCATGTGGGCAGAGGCTATGGGGAAGCTT GAGGGGATGGAAAGTGCTGATAGAGAACGTCTGTGGCCGCAAGTTGTTCAGGGTTTTAAGGATCTTTCCCAACGCCTTAA GATCCAAGATGAAGTCATAGCTTCTGATGCAGAGAGGTTACGTGTAACCCAGAGCAATGTGAAAATGCTCCAAAGACATT TTCAAGCTGATACTCTACCTTGGATTCAAAGGCTGAAACAGAAAGAACAAATTCTCCAGCAACGTCTTTTAAGAGTAATG CGCATAGTGGAGGCACTCGAGGGAAAAGGATGCCGTATACCCCTGACAAAAGGGGAAGCTGAACTTGCTGAGAAATTAGC CACAATAACTAGACAGCTGAAAGGATCCGGAGCGGAACTCACTAGGAGGGTACAAAATCTATTAACTGTATCTCGTGTTC AGGCTAAGAGCAATGGATTTGGTGGCCCAGTTTATCTTCCGGGATCAACAAAAATTCATGAACAGAGTCTGACTGACCTG CAGGAGGTCTTACAGCAGCAAATGGAGGCCATAGCAAGACTTGGAAGTGTTCTGAAGCGAGATGTACGGGATATGGAGAT TATGATTGCTGAGGACACAGGAGCAACCGAAAACGGGAATTGA
Protein sequence (LotjaGi1g1v0580200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGAQPSSSPSPSLFGTPSASTPAFGTPSSTPAFGTPSSTPAFGSSLFSSPFTPQQTPLFQQQQQPSTGFSFQNSPAPQQ QQQPTPFPNAQLTTQMANVAPVPYSLPDRDVQAIVDAYKEDPGNPKFAFKHLLFSVTEPQFRMKPAGISDIMWAEAMGKL EGMESADRERLWPQVVQGFKDLSQRLKIQDEVIASDAERLRVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRLLRVM RIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELTRRVQNLLTVSRVQAKSNGFGGPVYLPGSTKIHEQSLTDL QEVLQQQMEAIARLGSVLKRDVRDMEIMIAEDTGATENGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 89 | 89 | - | – | |
| PANTHER | 2 | 357 | 356 | 1.2E-106 | – | |
| PANTHER | 2 | 357 | 356 | 1.2E-106 | ||
| Pfam | 144 | 288 | 145 | 7.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nuclear pore | Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined. |
Expression pattern of LotjaGi1g1v0580200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…