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LotjaGi1g1v0581100.1

Overview

Field Value
Gene ID LotjaGi1g1v0581100
Transcript ID LotjaGi1g1v0581100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Calcium-binding EF-hand protein; TAIR: AT2G44310.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q6DN52|CBPL_DICDI Calcium-binding protein L; TrEMBL-Plants: tr|A0A151S7P0|A0A151S7P0_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0581100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:112044660..112045087) extracted from Lotus japonicus Gifu genome v1.2.

AGTAGAAAAGAAAGATGAGTGTAGAAATATTGGATGGTGCCACCATTGTCAACTTCCTTGAGGATGAAGAAGCGTTTAAT ATCTCGGTATGCAACCGGTTCGCTCTCCTTGACACAAACAAGGACGGTCTTCTCTCCTATGAGGAGATGCTGAAGGAGCT CCAGTGCCTGAGAGTTCTAGAGACCCACTTTGGCATTGATGTGAAGCCTGACCCTGATGAGCTTGGTCGCGTTTACAAGT CATTGTTCATCCAATTCGACCATAACTTGAATGGTTCAGTTGATCTAGAAGAGTTCAAGATGGAAACCAGGGAGATGATG CTTGCCATGGCAGATGGAATGGGTTTCTTGCCAGTTCAGATGGCCCTTGAAGAAGACAGCATCCTGAAGAGAGCTGTTGA AAGGGAGTGCAATAAAGTCGTTGCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0581100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGTAGAAATATTGGATGGTGCCACCATTGTCAACTTCCTTGAGGATGAAGAAGCGTTTAATATCTCGGTATGCAA CCGGTTCGCTCTCCTTGACACAAACAAGGACGGTCTTCTCTCCTATGAGGAGATGCTGAAGGAGCTCCAGTGCCTGAGAG TTCTAGAGACCCACTTTGGCATTGATGTGAAGCCTGACCCTGATGAGCTTGGTCGCGTTTACAAGTCATTGTTCATCCAA TTCGACCATAACTTGAATGGTTCAGTTGATCTAGAAGAGTTCAAGATGGAAACCAGGGAGATGATGCTTGCCATGGCAGA TGGAATGGGTTTCTTGCCAGTTCAGATGGCCCTTGAAGAAGACAGCATCCTGAAGAGAGCTGTTGAAAGGGAGTGCAATA AAGTCGTTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0581100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSVEILDGATIVNFLEDEEAFNISVCNRFALLDTNKDGLLSYEEMLKELQCLRVLETHFGIDVKPDPDELGRVYKSLFIQ FDHNLNGSVDLEEFKMETREMMLAMADGMGFLPVQMALEEDSILKRAVERECNKVVA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34574:SF10
1 135 135 2.0E-72 –
PANTHER
PTHR34574
1 135 135 2.0E-72 –
Gene3D
G3DSA:1.10.238.10
8 109 102 6.9E-10 –
Pfam
PF13499
26 95 70 1.2E-10
IPR002048
SUPERFAMILY
SSF47473
27 105 79 8.01E-10
IPR011992
ProSiteProfiles
PS50222
29 55 27 8.683
IPR002048
ProSitePatterns
PS00018
33 45 13 -
IPR018247
ProSiteProfiles
PS50222
69 104 36 8.042
IPR002048

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005509
Molecular function Calcium ion binding Interacting selectively and non-covalently with calcium ions (Ca2+).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0581100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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