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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0587300 |
| Transcript ID | LotjaGi1g1v0587300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT4G13150.1 transmembrane protein; Swiss-Prot: sp|O51266|DEDA_BORBU Inner membrane protein BB_0250; TrEMBL-Plants: tr|G7L174|G7L174_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi1g1v0587300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112747161..112753198) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAGAATTTTCAAAAACAACTCATTAGAGTAGACAACCTCGATCTTCCACCTTCAATAGAAGATACCCTTTTGAAGAT ATCCATGTTTGAACTTTCAAGAGTATCTCCACTCAAGGCATATTCCTTTCCTTCCATTCTCTCTCACTGGTTCACATCCA ACCACATGGACCCAAATTCACCTTTCATCTCTGTCTACGACGTCGTCACCCTATTCCAACCCATCATCATCGTTAATTCA TTATCATCACCAAATATATCTTCAATTTCACTGCTAGTGACTGGAGCTGTGTGAGCTCCAACAATGTCTGTAGCGCCTGT TTTACCACGCGGATATTTCTTAAACCTTCGCACACCCAGTCTACGATGTGGTAGTCCTACACCCATTACACACTTTTGCT GCTTCAATGTCCGTCGCAGGTTGTCTGCAAACGAGAATGTAGTAGTTGCCCATGTTTCTCAACTCTTTGGGTAACTTTCC AATTTCCTTTTGTTCTTGTATGTGAATGTGATTGCTCTTCAGATTCAGCATTTGATTTCTTATATTGTTCTGTTTTTTTT GAAAATATTATTTCATTTTGCATTTTTTGGTTTAGCCTAGATGTAGGGTAAAATATGCAAGAATTCCAACTTCTCATATT TTCAGTTTTGCATTTGGATCATGCCTTGCGCTAAGTGGATTTTTAATTTTTATGAACTTGATGCGTTTGTTCCACATAGC CAAGTCTATCCTTAGTTCCAACCTCAGTGCATAGTCCATATAAACATAACCCATTAGTAAGGGGCGGGGTCGCCTAAGAA TATAAAATACATGCCTCGCCAACATGGCGCGAGAAATACCTAAGTCGCCAATATGGCGTGAAGAATGCCTGAATGATCAA AAGAGACAGCTAATACATATAGACAATGTGGGACCGCCCACGTATGGAGATGTTGCCCGCAGGATGAAGAAGTCATGTCT AAGGGCTTGCTAAATGTGAGGTGGCTCGCCAGATAGAGAATTGCTCGCCAAGATGTGGAGTCACTCGCTAGGTAAGGAAG TCGCTCACCAGATAGAGAAGGCATAAAGGAACCGAATGAAGGAGTCGCCAATGGCTGGTCACTTCAGACCAGTCCAATAT TAATCACAAAATTTTCTTAGGATGTCTTAGCCAAATGAGCAGTGTCTTTTATGAAAGCTCATTGACGTATGTTGAATGTA ATGTTTTGGTAAAATTATAAGCTTGAAGATTTATTAGTTCTTTAATTATTTATGTTTTGCCTATGTTGCATCTATAAAGA GATGAGTTTGTTTATACAACATAGACCCTCCTGAATGATGTTTATGTTTTTGGCCCTCTTAGGGTGTTGCTTTGTTATTT TGATTCCTTTTTTTTACTATCATTATAATTATCAGCACAATTAAATTACCTTTACGTTGCAGAAGCAGAATTAGATGCTT TAAGCAAGAAGGTGCGGAAAATTTTGAGGCTGTAAAACCTAAGAATATACCAGAACCAGATTCGCAAGATAGCTTCGTTA ATGAGGTGCAAATAAAAGGTAAAGGGGGGCATAACAAGACAGAAATCTCCTTCCTGGCAATGATAGCAATTGCATTGGGC ATAGCTGTAATAGCAACATTAGCTTCCATTGGCAACAAACCTATTCTTGGATCAACGTTTCGTCCACAGATTCTAGCAGA AGGTTCTTCCTCTTCAGCAGTCGCCCCCGCCCCTGGTGGTTTTGCTTTCAAATTTTTTGGATACAGCGTCATACTTCCTG AATATGCACCAGGGTACACCCTGCTTCCCTTACACTGGATAATACTGATAAACATATGTGCTGACTGCTGATGAGAGTGT CCTCTTTGTCACTCATTGCAACACTTTGCAGTTACACTTTAGCTGTTCTCAAAGTTTCAACACTTTTATTTGAGTTGAGC AGTGATTTCAAATTGGAGGAACACGTATTCTTGCTAGTGTATGGGAAATCTATTCATTTTATGGCTGCATATTTGTTGTT TTCTTGTAGATTTAGTTATGTTTTCTTAATATTGTTGTTTGCTATTTCTGTTACTTGGACTCATCTATGCATCTAGGACA AGTATTTGTCATATAAATTTACTTGAAACTATCACTGTTAATGAGCACAAAAGTAAACTTTTGACCAGAACAAGAAATCT CTTGCTACCAGACTGTTTCCATGTAAACATAAAGTATATGCATTTTTTTCCCAGTACAGTTACTGTTGAGAAATCCCACA TTGACTTGAGATATGGCCAAGATAGCCCTATATATGTGATGGAAATCCTCACCTCTTGAGCTCGCTTTTGGGGTAGAGTT AGGTCTCTCAAATTCTAATATGGTATAAGAGCCTATCATAGATCCGTTAAGTGTAGAGCACCCGTATATGGGCCACCCGC AAATGTTTATTTTTGCATATTCCATGCTCCAGATGTCCAGCCCTGGGCGCGTGAGGGGGTGTGTTGAGAGGTCCCACATG ACTAGAGATATGGCCAAGATAGCCCTTATATAAAAGACAATCCTCACATCTTAAGCTAGCTTTTTGGGTAGAGTTAGGTC TCCCAAATTCTAATAGTAACAAAGGATATATATATATATAGAAACTCTGCCAATTGTTACTTTGTGGAGGGCTTTAGACA TGAAATCATATTAGATTTGAACTAGAAGAAGAAAAAATTAGGCTTGAATGAGTGATTTCATGAGCAATAAGCTGGGAGTC TGAAGTGAAAAGTGCTGGTTCAGAAGTATATGTTACTGGAGTTTCTAGGTGGCTGCAAATTTAGTGGACAAGAATGGAAA CTTATGAATATAGGCCAAAAGTTGCAATGCATTTGTTTTTAAAATGAGTAGGGAGTGGTTTTTTTTCCCCTTCTTTTGTC TTTTGCCCAGACTAATTTGTTTGGGATCCTAGGACATGGAGAGATAATTTAGAGGCTTGATATGGTATCATGAACTACAT TCAAGAGTAGCTGGCTGAACCAATGTACTACAGATTATATTATAAATGTTCAATTCACTTCATTATTTCCCCTATCTTCA TTTTAAATGAATACCATTCTGCAGAAATTACTTTTTTCCGAAAATTTTGAGTTGGTATCTTCACAGGACACAATATACTA GAAGAAGAAAGCATAGTTCATATTTTCTGTGTTTATTACATGAACTGGGTTGTGTATGTATTATGCATGATCACGAAACA ACGTATAAGAGAAGAAAATTTATAAATAGATCTTTTTATATTAAGCATGAATGGACTTGTTTGTGTTTCCTAAAAGTTTT TATATTTAAGTCACATGCTCACAGCACTTATTCCTCATATTACAGTATCGTTAAGAGGTGCCCTAAAATTCCCCTTGAAA TTTTATTTCATTTACTTTTCATATGTGCTAACCGTTATCTGAATTCCCTGCAGATGGGTCTACTTTTGGTTGCTTATGGC TGCAGGCTGTGGACTTTTCATTAGTGAAGAGGCTTTAAATATTTGGGTCTGTGCTTTTCACTGGTACTTCTGTTGCTTCT TTGCTTTTCAACTGTAATTCTCCCCATAACGAAAACATTTTTATGGTTTCACTATTATTATAATCGTTTAATTATCTTTG AGGAATTGATTAGGTTGGTATATCAATAGCAAGGCTTCTGTCTCTGGATGGAACATGGCAGTCTTTGGCAGAATCTTTCT CAAGGAACGCTTCGTACATCATATCAACTGTTCTATGGGTTTACTGGTAATTAGCAACTTCCATCTAAACAGTCATGTAC TTCTTTTACACGCATTGTTTTACATCCATTGAAAACTACTGGTGATTCCTTTCAATTCACATTGTGTGGCAATTTCCCTG TTATTAGAACTTTTTCGTCATGGAATGTATATTGTACTTGAAAACTCTGTATTTCAGGGGAGTGTGCATCAGTGACCTGA TACCCTTTTACTTGGGGAAGCTTTTCAGACAATCTGGTGTATCTGGTGATGTTTCTTCAAAGGTAAGTTCTACATATTTT CTTCTGAACCTGAATTGGTTAGGTTCATAATGATACATCTGGAAATCAAATCCATGTAGGATGGGAAGAATGGGAGCTGC AAATTAAGGCTTAAGCTTCTCTGTATTTGCCAATTAGTTGTCAATGTTTTCCTTCTATTCCTAAATACTCTCTTTCTGGT TAATGTCAATAGCTAGGAGTTGGCAAAGAAAAAGCTTTGGAGATCACAAATGTTGTACAAAAGTACGGCAATCTTGTTGG TTTTGGTAAGCTCCAAGAACTTTTTATTATGCAAAGCAAGTGCTTTGATTTACGAAAATTTGGGAAAACTGAAATCACTT GTCAAAACATTAATCGAACATATATTTCTGGGTTATACCTGCCCATGTCTTTGTGTATGAGTATAATATAATTTTCTGTG CCAAAGTGCACTATTGTTTATGATGTTCTTCTGATTGACATTTGGCAGTTGAACGATTCTCTCTTGGAGTGAGAAACCCT ACAGCTTTTCTAGCAGGCGCCTTGGTTAGTGAATGAAACTGTTTGATGTGCTAGCAATTGTGGATCTGGTTTGCCAGTTT TTTTTGTTTTTGACCTTAAAGCAAATATTGCTTGCATTATGCTTCAAACACTCACAGGCACAGCCCTTTACTCGTTTAAT CGAATAGATTCGCGTTGCGTATTTGATGAAGTTAAGAGGGGAAAAAACCACAAGAAATTACACTAATAGCATAACACATT GGAAATTAGTATACAGATACAAATTTCAGCTACAAATTCACAAGAAGGGTCAGACTAAATAATCATTAGCTGGACACCAA GATGAAGCCAGATCAATAGATCTTTCTCAAAGTAAAATTGGTTTTAATAATTTATTTTTAAATTTCTCAAGTTCCTCTGA ACCCATAACAAAACTATGAACAAACAAATAACACATTCGTAAACTTTGTCTACCTCTTTATAATCAATTTACTCTTCTTC AAGTGCAGGGTATTTCTCCAAACTATTTTTTTGCAGGGGTGTGCTGCGGGGGTCTGTTCACACTTCCCATTCAGGTGAAT ATGAGCCCGTTCGGAACAGGCTTATTAAAGTTTTTCTGTAGAAAAAACACTACATAGGCTCTAATAAAGGCTATTTCGTT TGCATCCAAACGGGTTCTATGAAGCATAGAAAATAACAGGAACGTCTATCTTTTCTTTCTATATATTTTTAAGTGCTTTA ACCTAACTTTTCCTTTTCTTAATGTGATCACTCATCAGCTTGGAATAGGATTCCTTTTGAGGGAACGCCCTATGTTTGCT CTTGCTACTGTGGCAACTGTTGTGGTATTAAAAATGTGATTTTGAGCTTTTAAATTCTTGTTTAGTTAGAAATGATGTGA ACTTGACCTTTTTATTTGTACAGGGGTTTTGGACTATTTTCCCATATGCTGTGGCTGCTTCAACTGCTTTATTCTTTTAC CTCAGGCGGCGTTACTTGTCCTAGTGCTTGGAATGCTTTATAATATTTAGAAATATTGATTCCAAATATGTATATAAGTG ATCTTTAAAGTTAATTCATCTATTTGTTGAACCTTTTCCTGCTTATATATCACGAATAATGTTCTCTTGACGTCTCATTT CCACCTTCATTTTAGATAAATGAGAAGAGAAGAGAGAGAAATGAGTGATATGATTTGTGATGTGATAGGAATGCAGAAAG AGATATGAAGAAAAATGTGTGGAAATAAGATGAAAAAGAAAGTGAGGTGTGTATATATCATTACTCTATATATCACCCAG GAAAAATCATCAATCAATCACTATGGCTGATTAACCATATTTGTTGGGCTAGTTGTCAGCTAATGTAAAGTCTTAAATCT TGTAATGTTAAGTTTTGTAGTCTTGTGATCACGTTAGCTTTTGTGTATATTGGAATGGGCAAACCCCTTGTTAGAATAAA GCACTCACCTAGGGGCCTGTGTGTCCTTGTACACCGCTTATACCGCTTAAGTGGAATAAGGGTGAAGGGCGAGCGATGGT GGATGCCTGGATGGAACCCGCTAAGGATAGGTGAAGAG
CDS sequence (LotjaGi1g1v0587300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTAGCGCCTGTTTTACCACGCGGATATTTCTTAAACCTTCGCACACCCAGTCTACGATGTGGTAGTCCTACACC CATTACACACTTTTGCTGCTTCAATGTCCGTCGCAGGTTGTCTGCAAACGAGAATGTAGTAGTTGCCCATGTTTCTCAAC TCTTTGGAAGCAGAATTAGATGCTTTAAGCAAGAAGGTGCGGAAAATTTTGAGGCTGTAAAACCTAAGAATATACCAGAA CCAGATTCGCAAGATAGCTTCGTTAATGAGGTGCAAATAAAAGGTAAAGGGGGGCATAACAAGACAGAAATCTCCTTCCT GGCAATGATAGCAATTGCATTGGGCATAGCTGTAATAGCAACATTAGCTTCCATTGGCAACAAACCTATTCTTGGATCAA CGTTTCGTCCACAGATTCTAGCAGAAGGTTCTTCCTCTTCAGCAGTCGCCCCCGCCCCTGGTGGTTTTGCTTTCAAATTT TTTGGATACAGCGTCATACTTCCTGAATATGCACCAGGATGGGTCTACTTTTGGTTGCTTATGGCTGCAGGCTGTGGACT TTTCATTAGTGAAGAGGCTTTAAATATTTGGGTTGGTATATCAATAGCAAGGCTTCTGTCTCTGGATGGAACATGGCAGT CTTTGGCAGAATCTTTCTCAAGGAACGCTTCGTACATCATATCAACTGTTCTATGGGTTTACTGGGGAGTGTGCATCAGT GACCTGATACCCTTTTACTTGGGGAAGCTTTTCAGACAATCTGGTGTATCTGGTGATGTTTCTTCAAAGCTAGGAGTTGG CAAAGAAAAAGCTTTGGAGATCACAAATGTTGTACAAAAGTACGGCAATCTTGTTGGTTTTGTTGAACGATTCTCTCTTG GAGTGAGAAACCCTACAGCTTTTCTAGCAGGCGCCTTGGGTATTTCTCCAAACTATTTTTTTGCAGGGGTGTGCTGCGGG GGTCTGTTCACACTTCCCATTCAGCTTGGAATAGGATTCCTTTTGAGGGAACGCCCTATGTTTGCTCTTGCTACTGTGGC AACTGTTGTGGGGTTTTGGACTATTTTCCCATATGCTGTGGCTGCTTCAACTGCTTTATTCTTTTACCTCAGGCGGCGTT ACTTGTCCTAG
Protein sequence (LotjaGi1g1v0587300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVAPVLPRGYFLNLRTPSLRCGSPTPITHFCCFNVRRRLSANENVVVAHVSQLFGSRIRCFKQEGAENFEAVKPKNIPE PDSQDSFVNEVQIKGKGGHNKTEISFLAMIAIALGIAVIATLASIGNKPILGSTFRPQILAEGSSSSAVAPAPGGFAFKF FGYSVILPEYAPGWVYFWLLMAAGCGLFISEEALNIWVGISIARLLSLDGTWQSLAESFSRNASYIISTVLWVYWGVCIS DLIPFYLGKLFRQSGVSGDVSSKLGVGKEKALEITNVVQKYGNLVGFVERFSLGVRNPTAFLAGALGISPNYFFAGVCCG GLFTLPIQLGIGFLLRERPMFALATVATVVGFWTIFPYAVAASTALFFYLRRRYLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 103 | 103 | - | – | |
| TMHMM | 104 | 126 | 23 | - | – | |
| Phobius | 104 | 125 | 22 | - | – | |
| PANTHER | 115 | 373 | 259 | 2.2E-81 | – | |
| PANTHER | 115 | 373 | 259 | 2.2E-81 | ||
| Phobius | 126 | 169 | 44 | - | – | |
| Phobius | 170 | 189 | 20 | - | – | |
| TMHMM | 170 | 189 | 20 | - | – | |
| Phobius | 190 | 195 | 6 | - | – | |
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 196 | 213 | 18 | - | – | |
| Phobius | 214 | 224 | 11 | - | – | |
| Phobius | 225 | 247 | 23 | - | – | |
| TMHMM | 226 | 248 | 23 | - | – | |
| Pfam | 227 | 330 | 104 | 1.8E-8 | ||
| Phobius | 248 | 311 | 64 | - | – | |
| TMHMM | 312 | 334 | 23 | - | – | |
| Phobius | 312 | 335 | 24 | - | – | |
| Phobius | 336 | 340 | 5 | - | – | |
| Phobius | 341 | 370 | 30 | - | – | |
| TMHMM | 349 | 371 | 23 | - | – | |
| Phobius | 371 | 376 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0587300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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