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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0589500 |
| Transcript ID | LotjaGi1g1v0589500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR-repeat protein, putative; TAIR: AT2G06040.1 F-box/LRR protein; Swiss-Prot: sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2; TrEMBL-Plants: tr|I1MSA9|I1MSA9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0589500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112965289..112969348) extracted from Lotus japonicus Gifu genome v1.2.
CACTTTTCAAACTCCAAACTCCTACGCTATCTCATCTCTGTCTGTCACTTCAATTTCTTGTCAAGCGAACAGGACACAGT GTTAAAGTTGCAGCATTGCACTAGAATCCATTTACGCTCTGTTTTCTTGTCACTTGGTTCGTGTTGTATCGTTTGGAGAA GAAGAATATGGATTCGCAGACTCCTTTCTCTCAGGCGTTGAAACGCGTTCAAGATCGGCGTGATTCAGTGTCATGGACAC CAACAAAGAAAGAAGGTGGTGTTGCAATTGCAATTGCAAGGTTGGTACCTTCCTCGCTCCAAGAATTAGCCATGACAAAG TTTGCATCTGATATCTCAGAGATTGCTACTACATCTGGTTCAATGGAAGGTGTTGTCAAGTACATTGAGGATCAAACTTT TTCAATTAGGGATTTGCCACACCATCTTCTGGATACACTCATCGATCAACTCTGGGGGGAGACTGATCCCGTAAAGATTG AATTTTTAAGGGTTCTTGTAACTGGGTCGCCCAAGGAGATTCGGGTTGTAAATGGCTTCTGGTTGACAGAGTCGCAAATT GAATGTTTCCAAAACTGTGACACTGCTGAATTGAGGGTACGTGTTCTTACTATTATCTGATATTTCCATGTATGCTTGCT TTGGATTACTATTATCTGATATTTCCATGTATGCTTTGGATTACTATTATTTGATATTTCCATGTATGCTTTGGATTACT ATTATTTGATATTTCCATGTATGCTTGTTGGATTACTCTTATTTGATATTTCCATGTATGCTTTGGATTCTATTTAGGTT TAGATTTAAAGAAAACTACACTATCTGAAGGGAGATAGATAGTGTAGTTTTTACCAATACCAAGCACTTTGACTTAGGAA TGGATTGTTGTGAATGCATCTTTTCCAGTAGTAAAAATAGTGTTAGCCATGGCAGTACTTTCAATAGTAGTGTGGGAAAT AAGAGACTTACTGATGCACAGATGCAGGAGAAAATTAGAAAAGGAGTGTTTTCGTTGTGAGGAAAAGTTTAGTCATAATC AGACAAGGGAAAGTTAACTACTGGAAGGAATTGCAGAATTAAAACTAGTAGCCACTAAGGAACCAGAGTGAGAGGCAACA GAATTGGACCTGTTAACAGCATAATTCTTGGTACCAAAACCTCCTCTGTTTGCTCCATAGCCAGTGCCTTTCCCAAAAGC TTGGTTCTTTTCTTCAATAAGTCTAGCTGCCTTCAACATAAATGTCAAAGATTGGGGCTCATATAAACGTAATTCTGCCT CAATCTTCTCCTTCAACCCTCCAACTGAATCGTGTGACTCATGTATGAGTGAATCTGCAATACTGGCTGTATTGGCAAAG AAACAGCTGCTTGAACTGAACATGAGTTATAACTTTAATAGCGTAAAATAATTATTTAGGAAATTTAAATTTTTTCAACT TTTGCCATAATTATTTTCCTTTGTTATGCTTCATCAAGCCATTTTACTAATATATAAGTGATTATGTGAGGATTAAAAGT AAATCCAATCATGATATATATAAATATATATATATGTCCTGTTAACTACTTCCAGTGAAATATTGTCACTAACTAGGTAT TGCTGATATTATATATAAACTGTCAACATTAGTATGAAAAGTTTAGCTGAGTCTCTACATGAAGTTACCTCCGCTGCCAC TGAAAGGCTACCTAGACTTTTCTGTGCTTTGTTCTCTTGTATCACTTTCAACTGAAATTTGAAGGTACAGTGACAAATTT TAGCCATACCCTTGTGTTCTTGCACGGGAAGCTTCACTACAATGCTGTTTTCTTCCGTTCCAATGTTGTTGTGTTCCATG TTGAAGTTTGAGCTCTGTTTTCACCTGGTTCTGATTCTGTTCCCTGACTCCATACACCATTGCTTCTCAGCTACTTTGTT CTATTTCTCGAGTAGTAGTTTAGTAGAGCTGGACACTTAGATTATGTTCCTTTGGATTTTTCAGTATTAGTTTTATGTTA TGAACTTATGTTTCTTATGAAAATATTATATTGTGACTTATGAATGTGATTTTCCTTATCTATGTTCTTTTATATGCATA TGCTTATGTCTTAAGTATAATTTTGTATTTCTAGCAGGATCTTAGGATCCAGTCTAAAATTTATGATCTTTCACCCCCTC TCCCCCAATCCTAAGATCCCGATCTTGACAACATTGTGCACCATCATTCGGGATTGATAATAGTAGTCACACGCATATGG CCAAAGAAGAATCACTTGCATCCTAGCTTAGGGGTTTTTTAATGGAGTTTTATCCCTTAGAGGGTTCTTACTATTATTTG ATATTTCCATGTATGCTTTGGATTCTTTTTAGGTTTAAGATTTTTAAAAAAACTACACTAATTTAGCTTGTGGAATTAGG TACTCCAAATGGAATTTTGTGACTCGTGTATGATTGAGTCTGCAATACCGGCTGTGTTGGCAAAGAAACAGCTACCTCAA CTGAACATACTATCCCTTAGAGGTTCAGCTTATCTTGAAGATCAGGGATTGAAACTGATACTTGGCTCTTGTCAGAAGCT TGAATCCATAAATCTAAGTATATGTCCCCAACTCACATCTGAGGGTGTTGCTATGCTGACTGGTCCATGTCGATCAACTT TAAAAGAGTTGTATCTTGATGAGTGTAGTAAACTCACTGGTAAAGATATTCTTTCTTCACTGAAGAATCTTGAATGCCTG GAAGTGTTATCAATTGCTGGTATTGGATCCGTTGATGATGATTTTATTATGGATTACACTGTTGCACGTGGTCTCAACCT GAAGGGGCTCTCTTTAAGGGACTGCAGGTATGTGCCATTAAATTTGAGCATAAAAATTAATGAAAGATGATATTCATGGT AATACAATATGATTTTGGTTAACTAGGTTAAATTTAATTGCTGATTTATATTTCTAAATGAACAGATTCTTGACTGATGT CTCAGTCAAAGCTATATCTGAGCACTGTCCCAGGTTGCACACACTGGATATTGGCAACTTGATCAAATTGTCCGATTTAT CATTTGAGTTTCTCACTAATAGTTGTCAAGCCATGCGCACCTTGAAGCTTGAAGGCAATCCAATTAGGTGTGGTTTTTTC TGTATTTTTCTTGCAGCAAATATCAGATTTCAATTCCATTTGATGAATAAATTAACTTTATTTGTATTCCAGTGATGAAG TAATTGCTGCCTTTTTGGAGGTTAAGGGATCGTGTTTGCTTGAACTTTCACTAGATTCCATGGAGAAGGTACATTATTTT AGCTGTGGTGCCTAGCTATATTGTAGTTATACTTTTCTATTTTCTAAGTTCCCTTCATATTTGCTTTAATCCAGGTTGGC CAACACACAACCTTGTCACTTGCAAATTGTACAAAACTACATACCCTAAATCTTCCAAGGTGTGTAAATATGAGAGACTT GGAATTGGGCTTCATAGTAGATAAATGTAGGGCATTGAGGTCTCTCACAATTCATCACTGCTGTAAGGTATCATCTAATA CAGCATTTATGATAATAAATTTATTTTATTCATGAAAAATATTTAAATATTTAATTTACAATTTTTTTTTGTAGGTAACA AGAGATTTCATTGATGGGCACTCAAATCCCCATCTTGAAATCAATTGGACAGATCCAGATGATCAAGTTCCATTGCATAA TGATAGGTTAGATGATTGAGATTTGAGAGGATAATGGAACAATGAAAAATCAATAGTATATGGTAATGAGATCACATATA GTATCCTAGTAATGAGATCGCATATTCACCCGAAAAATCTTTTTGTATTGGGTATTTTTTTGTACATATTAGACAATCAA ATAATTCTATCGAGACATGATTTTAACAATTTTTACAATATGAGGCTATTTTTTTGTTTTTTATTTGATTCCAAAATAAT TTGAAGCATTAGATGAGGATGAATTGAAAAAATATTGTATTAATCTTGAAAAGTTTTTAAGATTTAATGTATATTTTAAC ATTGATGGATAGTAACTCCAACAAGTGTCACCCTCTCATTCTTTGTCTTCTTTGTCTATA
CDS sequence (LotjaGi1g1v0589500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGCAGACTCCTTTCTCTCAGGCGTTGAAACGCGTTCAAGATCGGCGTGATTCAGTGTCATGGACACCAACAAA GAAAGAAGGTGGTGTTGCAATTGCAATTGCAAGGTTGGTACCTTCCTCGCTCCAAGAATTAGCCATGACAAAGTTTGCAT CTGATATCTCAGAGATTGCTACTACATCTGGTTCAATGGAAGGTGTTGTCAAGTACATTGAGGATCAAACTTTTTCAATT AGGGATTTGCCACACCATCTTCTGGATACACTCATCGATCAACTCTGGGGGGAGACTGATCCCGTAAAGATTGAATTTTT AAGGGTTCTTGTAACTGGGTCGCCCAAGGAGATTCGGGTTGTAAATGGCTTCTGGTTGACAGAGTCGCAAATTGAATGTT TCCAAAACTGTGACACTGCTGAATTGAGGGTACTCCAAATGGAATTTTGTGACTCGTGTATGATTGAGTCTGCAATACCG GCTGTGTTGGCAAAGAAACAGCTACCTCAACTGAACATACTATCCCTTAGAGGTTCAGCTTATCTTGAAGATCAGGGATT GAAACTGATACTTGGCTCTTGTCAGAAGCTTGAATCCATAAATCTAAGTATATGTCCCCAACTCACATCTGAGGGTGTTG CTATGCTGACTGGTCCATGTCGATCAACTTTAAAAGAGTTGTATCTTGATGAGTGTAGTAAACTCACTGGTAAAGATATT CTTTCTTCACTGAAGAATCTTGAATGCCTGGAAGTGTTATCAATTGCTGGTATTGGATCCGTTGATGATGATTTTATTAT GGATTACACTGTTGCACGTGGTCTCAACCTGAAGGGGCTCTCTTTAAGGGACTGCAGATTCTTGACTGATGTCTCAGTCA AAGCTATATCTGAGCACTGTCCCAGGTTGCACACACTGGATATTGGCAACTTGATCAAATTGTCCGATTTATCATTTGAG TTTCTCACTAATAGTTGTCAAGCCATGCGCACCTTGAAGCTTGAAGGCAATCCAATTAGTGATGAAGTAATTGCTGCCTT TTTGGAGGTTAAGGGATCGTGTTTGCTTGAACTTTCACTAGATTCCATGGAGAAGGTTGGCCAACACACAACCTTGTCAC TTGCAAATTGTACAAAACTACATACCCTAAATCTTCCAAGGTGTGTAAATATGAGAGACTTGGAATTGGGCTTCATAGTA GATAAATGTAGGGCATTGAGGTCTCTCACAATTCATCACTGCTGTAAGGTAACAAGAGATTTCATTGATGGGCACTCAAA TCCCCATCTTGAAATCAATTGGACAGATCCAGATGATCAAGTTCCATTGCATAATGATAGGTTAGATGATTGA
Protein sequence (LotjaGi1g1v0589500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSQTPFSQALKRVQDRRDSVSWTPTKKEGGVAIAIARLVPSSLQELAMTKFASDISEIATTSGSMEGVVKYIEDQTFSI RDLPHHLLDTLIDQLWGETDPVKIEFLRVLVTGSPKEIRVVNGFWLTESQIECFQNCDTAELRVLQMEFCDSCMIESAIP AVLAKKQLPQLNILSLRGSAYLEDQGLKLILGSCQKLESINLSICPQLTSEGVAMLTGPCRSTLKELYLDECSKLTGKDI LSSLKNLECLEVLSIAGIGSVDDDFIMDYTVARGLNLKGLSLRDCRFLTDVSVKAISEHCPRLHTLDIGNLIKLSDLSFE FLTNSCQAMRTLKLEGNPISDEVIAAFLEVKGSCLLELSLDSMEKVGQHTTLSLANCTKLHTLNLPRCVNMRDLELGFIV DKCRALRSLTIHHCCKVTRDFIDGHSNPHLEINWTDPDDQVPLHNDRLDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 432 | 431 | 1.0E-92 | – | |
| PANTHER | 2 | 432 | 431 | 1.0E-92 | – | |
| Gene3D | 70 | 268 | 199 | 7.0E-21 | ||
| SUPERFAMILY | 142 | 392 | 251 | 2.88E-33 | – | |
| SMART | 168 | 193 | 26 | 63.0 | ||
| SMART | 194 | 219 | 26 | 14.0 | ||
| SMART | 220 | 246 | 27 | 400.0 | ||
| Gene3D | 269 | 434 | 166 | 3.1E-21 | ||
| SMART | 274 | 299 | 26 | 0.23 | ||
| SMART | 300 | 325 | 26 | 23.0 | ||
| SMART | 377 | 412 | 36 | 82.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0589500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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