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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0589600 |
| Transcript ID | LotjaGi1g1v0589600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GPI transamidase component PIG-S, related protein; TAIR: AT3G07180.1 GPI transamidase component PIG-S-like protein; Swiss-Prot: sp|Q5XI31|PIGS_RAT GPI transamidase component PIG-S; TrEMBL-Plants: tr|A0A072TZI8|A0A072TZI8_MEDTR GPI transamidase component PIG-S, related protein; Found in the gene: LotjaGi1g1v0589600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112969889..112976427) extracted from Lotus japonicus Gifu genome v1.2.
CCAACCACTAGTTCATCATGAACCTCCCTCACGCAATCCCGAATTTGCAGAACCCCGATCAACTCGTGGCGGCGCAATGG CGGAAATCTCAGATTCAAAACCTGCAGAGGAAGAGGCTCCGATAACCCATATTCCACAACCCGACCCGAAAACCATGCGA TACACAAAACCCGGTGTCAAACGCCTCACCATCAGTGTCACAGTTCTCATCTCTTTCATCCTCGGTTTCCCACTTCTCTG GAAATCCATCGAAATCTACCGCGCTCCTCTCCCCTTCGACCGAATCGACTCCTTCTCCTCGCAGATCGAATCGACTACCT TCCACTTCCCCTGCGATTTCAAAGCCATCTTCGCCGGATTCGATTTTAGGGTTTCCTCCGGCGAGGTCGCGGCGGCGATC AAGGACAAGATGTCGGAGCTCAGTCCCGGCGCCGCCTCGCGCTGTGGTTGTGGTGCAGATTACTCCGTGTCTGCTGTGCT CGATTTTGGCGGGAAATTGAGGGGCAGTGACGACGACGAAGGGACTGATGAGTTGCTGAGGAATGTGCTGAATACTGAGA ATGGAGGTGGGAAGGAGTATAGTGTTGTGGTGGTGAATGGTGAGGAAGGGGAGGAGGTGAGGGCTGTGGTGGGGAAGTAT AGGCATGCCTGGATTCTTGGTCGGGTTTCGGAGGAGGAGGCGGTGTTGCGTGTGGCTGAGATATTCGCCAAGGTGTTTGT TAATGGTGGAAGTGAAGGAGGTTCGATTCGTGGTGAGTTTATGCCGGTTGGTGCTGATGGGAGGATAGTTCTTTCGTTCA GTTTGCTCAATGCAGACCCACGAGATTGGATTTATGATTGGTATGAATCACACTATAAAATGAAATTGAAAACTGCATTT CGAAATGTTGTCCAGATTAATGTCTGGTTTTGTTTCTGTGTTGCAAATGATGTGTTCTGTTGTGCTGTATTGGGAATTTA TCTGCTTGTAGACTAGAATTTACATGCTTCAACTAATGCAAGAGTTGGGGATTTTATGGTTGGGTGAAGGCAGAGATTAA TCTTGTTGACACTTGATATGTTAAATCTTTGTTAAGTTCTGCTGCTGTTTTCCTGGATAAATAAATAATGTGGATATGTC TTTTCTGTTCATGTATGGTATGTTAGCTTAGTTATCTATTGAATGGTATCATTTTGAAGTTTTAGTGATGATCTTCGTAT AGGGATTTTGGTCAAATTGATGAGGCTTTATTGCAACCTGTCATTGAGGCTTTGCAACCTATAGCGAACATCACAGTGGA AAGCCAGGTGACGTCTTGTAAATGTAATTGTTACTTCACTCATTTATGCTTTAGATTGTAGTGATTTTATTGTTCCCCCT GATTGGCAGGTTTTGTACCACACACCAAAGTCATCGTTTTCTTACTGGGATGATAAGCATAGCAGTCACATATTTAGTAC CAAGGATCTTCCCTTCTTTGTATGTTCTACCAATGGCTTCGAGTTATCATTTCTAATTACCGTCTATGTTGAATATATGA TATATTTAGTTCTATCTTCCGACTGTGCAAACTTGATGTAACTTGAACCAAATATTTATTTTGGAAGTTTCTCTATCTCC TTACTTCTTAAGTCTCATTTAGATTTGGTTCAAGTTACGTCGGTCCTTTATCCTTGTTTATGGGAAATCCACGGCGCATT CTTTTCCTTTTGAATTTTGTTTGATGTTTCTTGTAACTGAATACTATTATAATTACATGAATGTTTCTATGTTAAATAGG TGAATTCCAATGAGTGGCATTTAGATACGTCAGTTGCAGCGGGTGGGAGGTCAAAAGTATTGCAACTTGTGGTGTATTAT ATTTAACTCATTACTAAATTTATTTACTTTCTGATCACTATAAATCTAAGCTTCGATTCAGTTTACTTTCTATAGCCTTT GCACTATAACGTGGAAAAAATGAAATTACTTCTTTTTCTCTCTACTAATATACGTATTCTCAAGCATTAGATTTCAACTT ATTATCTTATGCTGGAAGACATGTGTTAATGTTCTTACTTCCTTGTCTATTATGTCAGGTACATTCCCTCTGCAAAGGAG TGTCCTCTTCAACTGGAGCTTCCTAGTGGAGAGTTCTCTTTGACTAATGGCTTTATATCTCCAGTTATTCATCTCAACTT CCAAATTTCCCTACTATTCTTGTTGTATTTATTATGTCTTATAAAATTGCCAAATTTGTTGACATTATGAAGAGCCTATT CTGGAACATTGCAGATGTGGGGAGGTGTTGTGGTATGGAATCCCCAAAGTTGTATAAAGGATATGGAAAGCAAGGAACCA GTCAGACATATGATTTCTCCTAAGGTTTTTCTTTTCTTCTTTACGTTTAAAGTAAACCAGTATGTGGAACTTTTTAGTTC ATGTCTGATACATGTTCAACTGGGGGTGTGCACAAATCAGGTTGGATTTGATGAAAAGGAAGTAGTTTGAACCAATTAAC TAAGTTCGGGTTGGGTTGGGTCTTGTTCATCTACTTTTTTAAAACTAATTCTGAACTGAACTGATAAAAATTGTGTTTGG TTCTTGTCATATCATCAGGTCTGCAAATTGTTAAATATTTTATACATGCATATACAAAAATATCAAAATTAAAATAGAAA CAGAAGAGAAGTGATTTTTAGGGGCTTGGGTTGGCTCAGATTCATTGAGTTTGAGGACCCTATACTCCAATATACGGCCT GATCTGAAAATAGTTGGATGACACTCTTTTCAACCTGAATAACCTGTATACCCAAACTAACCTGAACATTTTGATTTGGT CGGGTTGGCTTAGTCATGTTCGCATGTTTACCCAAATTCCTGCTTACCCCTACTTTCAACATAGACTTACTCCAACCAAT AACTGATACATTTTTACTCAGGCATATCATTTCAGGAACTTTTTAGAAACACCTTTTCCATGTTTTGTTTAAATAAAGAA TTTAATGTCAATTATTTATGCAGATATTCATATGGTCCAACTGTTGTAGCCTATCATTAATTCTCTCTCTGAACGTGCAT GTATACTCTGAAACAGGACCTCCAGAAGCTTTTTGATGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCTG ATAACCTTTATGTTGGTGAGTCAGGCACATTCATTCTCCTAGGGAGTGAACGAGGTCTCACAGAATGGTAAGAATAATAG TCCTGTTAAGATAATTTGGAAAAGCTTGACAGCGACTACAATATGTTAACAAAATAAAGGGGTGGCAAATGAGCGTTATC TTTTAACTCATATATGCCCTGATGGTGATCTTTTTTCTAAATTGAAAGTTTCTGTAATTGATTCTGTATACTTTAAATTC CTTGTTGGATGGGTCCTAAATAAAAATTAAACAATGCAAATAAGACCCACTTTGGAAAGACTTAGGGAAGAATCACAGTA TAGCAAGCCTGAGTGGGATACTACTACAAGGCTTAAGCAATTTACAGTCAAAAGAAAGTGTTATACTTGGCAATTGTGAA GAATGGGAAAATGACTTCCCCTTTTCCTGAACAAATCAAACAATAGATTTACTTTTTTACATAATGCGTATTTCTACAGA AAAATTTTCAGCCAAAAATACAATTTAAGAAAATATCCTTTTATGAAATTGATTTTCTAGAGGCATCTTTTGTATAGATT CGTATATATCATATTATTTATGTTAAAAGAAATGGAATATTTTTCATTTTTTATTTGTTCATGACTTTCTCCTTTAATTA GTTATAAATGGTAACAGTTTACTAAGAAACTAGCAATTAACCCATGCATTGCACGGGTTTTAACTTTAATATATAAAAAA ATAAACATAAACAAATTTTAGTATGTTAAAATTATTATTTTGTATTATTTTTTGAATTTCAAAGAAATAATTTAAAAAAC TGATTAAATGAGATATTTTAAGAGATTGAAAAAACTATAATTTAAAAATTAAAATTTTAAAAAACACGTGAATGAAAGAT AATGAAAAAAAGATACATTAAAAAATTAAAAATTGAGATGACTAATAAGTGATGACGTGGCTTAATGAGAGAGTGAGATT TTTGTGAGAGCTGATGAGAATGAGGTCTCTCTTTTATAACAGGGTGAATTATTTTCTTTGATTGTTTTTCCCAAATTAAG AAAATCTGGAAAATACTTTTACACCAAATACTGGAAACTATCAATAATATTTACAGAAATATTTTTCCATTTAAAAAAAA AATCCTTAGACCATTATATTTTTGAGCCTTTAAAGTTACTCAATTTGTTTGCTTGGGATGGTAAATGGGTTTCCTACATT TAAAGTTACTGCATTTGAAATTTTTTTCTTGCTTAAGTGCAAAATCACTGCAATATTAATTGTTGTCGGCTGATTGTGTG TAGGGAATTGGATGTTTTGTCACGGAAGCATATTTGCTTTAATCTCCTTTCATGTGCCACAACACTTGGCTCTCTTTGTA GACTGGTATGTTTGACAATTAAGTTGCTTCAACTGAGTCTGTTTCAGCTAGCTATTGTTTGGTGGAAGCTTGTCAAACTT CCATTCCATGCAGGTACAATCATTGCCCAGGATGATTATCATGGATGAAATCGGAAAACAGGTAATTTTTTTTTGGACTA CATGCTTCTCATTAGAAGTTGAACTGATATTGGATGCTATTATTAAACATTGCATATGATGTCCATCATAATCTTTTAAT TGATTGGTTCTGGATTTTGTTCATATATTACTATTTATAATAGGTAGAAGTAGAACAATGCATTCCCCCTCTGCTTTTAG TTGCGAAGATGCCAAGTTGATTGACTTTCTTCTTGATTAATTGATATCAAAAAATTCTTTCCTCTTTAGTTTCTAAAAGA TGCTTTGAAATCCCTTTTCTTCCCCACAATATTTTATTGTCTTTGAATAGGTGAAGTTTTCTTTGGAGGCTGCAAAGTTT GCTCAAAGTAATGCGTCTGTTGGACTGTTTGATGCTTCTGCTGGTATGTTTTTTTGAGACTTTGAGCCTGTTTGTATATG TGGTCTAAAAAGCACTTATTGGAATTGTTCTACTAAAAGATCTTTAGATAAGCTTCAATAAGTGCTTTTTTGGTTCCCAT CCAAACGGGCTATTTTTTCATTTGAAAGCTTCTTAGTCACTTCGATGAAGATTTGTAGGGTGTTGTCTATTGCTAAAATA TGATAAATCTCTTATCTTGTCAGTATCATCAAGGCAATCAAGATCTCTTGCAGAGGATGCCTTTTTTCACCCTTCAATTA TGTCGATCAGCTATTATTCGTTTGAGCATTGTTTTGCTATCTATTCGGTTTGTCCTTTATCTCTTCTCCCCTCTTCCATA AATGCAACTGCTTATTGACTTATGTGGATGCATAAACTTGACTTAGGATGATTTCATCTTATTGACCAGATTATCTTTTC CTTTAGACATTCATATTTAGGGACTGATATTATTCATCAATCTTTACCTTTTGATATTCATAAAATTAGGGAAATAGGGA ATACAAGTTATGTGTCCATGTTCCATGAAAACATTGTTTAATTTGACAACCTTTCTATGTCAGAGAAATGGATATTTAGG AATTAGAACTACAGTCCTGTAAAAGATATCGGATGGAGGCTTGAATGGAAAGTTATCTCTAGCCTTCTATTCATAATTGG CTTTTTCACTGTTCATGTAAAGCTAAATTCTTTTATCTGCTGTCCTTCTAGTTTCACATATGAGTTCAGTAAGAAATTCA TGGGAATTTGGTTGAGATGCCCGAACAATTTAAAGCTGCATGTTGAAGTTTACCGATGATTCTTACTCACATCATCTTTC CTTCTACTGTTGCAGCCATTCTTTCTGCCAGTTTTAATGCATGTCATCCTAGCAGCTTCAAGGGAATGGAAAAGATACAA GCAAGAAAATAGAAAATACTTGGCGGGGAAGACGAAAGCAAAGGCTACATCTTAATTCCCTTGACCAGAGATGACAGGAA GAAGCAAGTTTCTAGGTAGTTGAGTTGTAGTGCGTGGTTTAGCACTTCAACCCAAGTGTGAAGTGTTTTTCCTCTCTCGC CAATACCTGGTTCTCTGTGAATTTTGTTGAAAATGTCCATCATGGCATGATTCTTGGGGGATAATTTACATGCTTAGAAA AAGACAGTGGTGAGTAGTGTGGCGACTCTACGGCTCTTGGTTGTACCATATTAGGAGTAAATTGAGGAAAAAATGTACTT CACAATTTTTTAATGGTAATTGGAAAATTCTCTGAATTTAGCTGTTCAATCTCCGAGGTACTTGAAAAAAAAAAAGCGTA AACGAAACAGAGAAGGGTATGTTTAGTGGATAGATCTTGGTACAGTTTATATATAATTGTTAGAAAAGATAAATGAAAGG CAGTGTTTTGTGTGATTGTATTAATTTGCACCATTATTTAAGGAAGTTAATTTTTGATTTTTGATTTTTTTAATTTAGCC AATTTTCTTAATTAAATAACATAAACAGTTTTTAAGAATAGTATGGAAATGAGGAAAAG
CDS sequence (LotjaGi1g1v0589600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAATCTCAGATTCAAAACCTGCAGAGGAAGAGGCTCCGATAACCCATATTCCACAACCCGACCCGAAAACCAT GCGATACACAAAACCCGGTGTCAAACGCCTCACCATCAGTGTCACAGTTCTCATCTCTTTCATCCTCGGTTTCCCACTTC TCTGGAAATCCATCGAAATCTACCGCGCTCCTCTCCCCTTCGACCGAATCGACTCCTTCTCCTCGCAGATCGAATCGACT ACCTTCCACTTCCCCTGCGATTTCAAAGCCATCTTCGCCGGATTCGATTTTAGGGTTTCCTCCGGCGAGGTCGCGGCGGC GATCAAGGACAAGATGTCGGAGCTCAGTCCCGGCGCCGCCTCGCGCTGTGGTTGTGGTGCAGATTACTCCGTGTCTGCTG TGCTCGATTTTGGCGGGAAATTGAGGGGCAGTGACGACGACGAAGGGACTGATGAGTTGCTGAGGAATGTGCTGAATACT GAGAATGGAGGTGGGAAGGAGTATAGTGTTGTGGTGGTGAATGGTGAGGAAGGGGAGGAGGTGAGGGCTGTGGTGGGGAA GTATAGGCATGCCTGGATTCTTGGTCGGGTTTCGGAGGAGGAGGCGGTGTTGCGTGTGGCTGAGATATTCGCCAAGGTGT TTGTTAATGGTGGAAGTGAAGGAGGTTCGATTCGTGGTGAGTTTATGCCGGTTGGTGCTGATGGGAGGATAGTTCTTTCG TTCAGTTTGCTCAATGCAGACCCACGAGATTGGATTTATGATTGGGATTTTGGTCAAATTGATGAGGCTTTATTGCAACC TGTCATTGAGGCTTTGCAACCTATAGCGAACATCACAGTGGAAAGCCAGGTTTTGTACCACACACCAAAGTCATCGTTTT CTTACTGGGATGATAAGCATAGCAGTCACATATTTAGTACCAAGGATCTTCCCTTCTTTGTGAATTCCAATGAGTGGCAT TTAGATACGTCAGTTGCAGCGGGTGGGAGGTCAAAAGTATTGCAACTTGTGGTGTACATTCCCTCTGCAAAGGAGTGTCC TCTTCAACTGGAGCTTCCTAGTGGAGAGTTCTCTTTGACTAATGGCTTTATATCTCCAATGTGGGGAGGTGTTGTGGTAT GGAATCCCCAAAGTTGTATAAAGGATATGGAAAGCAAGGAACCAGTCAGACATATGATTTCTCCTAAGGACCTCCAGAAG CTTTTTGATGTTCTCATGGGGCAGTTGCGGCAACTCCTTGGTCTGAAGTCTGATAACCTTTATGTTGGTGAGTCAGGCAC ATTCATTCTCCTAGGGAGTGAACGAGGTCTCACAGAATGGGAATTGGATGTTTTGTCACGGAAGCATATTTGCTTTAATC TCCTTTCATGTGCCACAACACTTGGCTCTCTTTGTAGACTGGTACAATCATTGCCCAGGATGATTATCATGGATGAAATC GGAAAACAGGTGAAGTTTTCTTTGGAGGCTGCAAAGTTTGCTCAAAGTAATGCGTCTGTTGGACTGTTTGATGCTTCTGC TGTATCATCAAGGCAATCAAGATCTCTTGCAGAGGATGCCTTTTTTCACCCTTCAATTATGTCGATCAGCTATTATTCGT TTGAGCATTGTTTTGCTATCTATTCGCCATTCTTTCTGCCAGTTTTAATGCATGTCATCCTAGCAGCTTCAAGGGAATGG AAAAGATACAAGCAAGAAAATAGAAAATACTTGGCGGGGAAGACGAAAGCAAAGGCTACATCTTAA
Protein sequence (LotjaGi1g1v0589600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEISDSKPAEEEAPITHIPQPDPKTMRYTKPGVKRLTISVTVLISFILGFPLLWKSIEIYRAPLPFDRIDSFSSQIEST TFHFPCDFKAIFAGFDFRVSSGEVAAAIKDKMSELSPGAASRCGCGADYSVSAVLDFGGKLRGSDDDEGTDELLRNVLNT ENGGGKEYSVVVVNGEEGEEVRAVVGKYRHAWILGRVSEEEAVLRVAEIFAKVFVNGGSEGGSIRGEFMPVGADGRIVLS FSLLNADPRDWIYDWDFGQIDEALLQPVIEALQPIANITVESQVLYHTPKSSFSYWDDKHSSHIFSTKDLPFFVNSNEWH LDTSVAAGGRSKVLQLVVYIPSAKECPLQLELPSGEFSLTNGFISPMWGGVVVWNPQSCIKDMESKEPVRHMISPKDLQK LFDVLMGQLRQLLGLKSDNLYVGESGTFILLGSERGLTEWELDVLSRKHICFNLLSCATTLGSLCRLVQSLPRMIIMDEI GKQVKFSLEAAKFAQSNASVGLFDASAVSSRQSRSLAEDAFFHPSIMSISYYSFEHCFAIYSPFFLPVLMHVILAASREW KRYKQENRKYLAGKTKAKATS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| PANTHER | 24 | 575 | 552 | 4.6E-183 | ||
| TMHMM | 37 | 55 | 19 | - | – | |
| Phobius | 37 | 55 | 19 | - | – | |
| Pfam | 42 | 565 | 524 | 3.0E-124 | ||
| Phobius | 56 | 537 | 482 | - | – | |
| TMHMM | 532 | 554 | 23 | - | – | |
| Phobius | 538 | 556 | 19 | - | – | |
| Phobius | 557 | 581 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Attachment of GPI anchor to protein | A transamidation reaction that results in the cleavage of the polypeptide chain and the concomitant transfer of the GPI anchor to the newly formed carboxy-terminal amino acid of the anchored protein. The cleaved C-terminal contains the C-terminal GPI signal sequence of the newly synthesized polypeptide chain. | ||
| Cellular component | GPI-anchor transamidase complex | An enzyme complex which in humans and yeast consists of at least five proteins; for example, the complex contains GAA1, GPI8, PIG-S, PIG-U, and PIG-T in human, and Gaa1p, Gab1p, Gpi8p, Gpi16p, and Gpi17p in yeast. Catalyzes the posttranslational attachment of the carboxyl-terminus of a precursor protein to a GPI-anchor. |
Expression pattern of LotjaGi1g1v0589600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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