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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0592500 |
| Transcript ID | LotjaGi1g1v0592500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT3G07340.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62; TrEMBL-Plants: tr|I3SC42|I3SC42_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0592500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113245888..113249726) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATAACAAAAAGTCAAACATTGAGAATTATGATTGAACTTGATGTTGGATCTCTATTTAGGCCCCCCATAGCAACC CTCTCACTCCCCTTTCCCTTCCCCTCTGTTTATCTCCTCTCTCTCTCTTGCTTATTTCACACCAAACCCAACCTTCTCAA CCATTTCACTGATCATTCCATTCCACCACCCAAAACCCAATTCCCCCTCTTTTCTAATGTAACCCAATTTCACAACCAAT TTAACCCCTCAAACATCATCATCACCTTCATTCTTCAACTTAATTTCATCATCACATCCATTTTTTCCATTCTTCAACTT GAGCTTGAGCTTGATCTGCTTCATCTGTTAACTGATGGAAAATCAATTCTTCTCTAATGGTGGTGTTCCACCTCAACTGC ATTTTGACCCTTCAATGCCCACTTGGCAATCACCACCACCACCACAATCATCTGAGCAGAACCAAGATTGCTTCTACAAC ACCCAAACATGGGAGAATTCAACGGATCATCACGCTCTTCACTTCGATTCCGCCATGAGTTCAATGGTTTCTTCTCCTGC AGCTTCCAATTCCAACATGTCCAGTGACAATTTCGCCATCAGGGAGCTCATTGGGAAATTGGGGAACATTGGTGGTGGCG GTGATGAGATCTCACCGGGTTTTCTCAAATCAATGGCCTTGAATTCCACTGTGGCGGAATTCTCAGGCGATCCCGGGTTC GCGGCGCGGGCGGCCAAGTTTTCTTGCATTGGAAGTAGGAGTTTCAATGGCAGGAGTAGCCAATTGGGGCTGAACAACAA TGCTGAGTTGACTCAGAGTCAGAGGTCTCCTTCATTGATGGAAAATGGGATGCTTCTACCTAGAGTCTCGAGTAGTCCAT CGTTGAAATTGCTTGGGTCTCAAATGGAAGGGACCAATTCTCAAGAGGAATCTACAATCTCTGAGCAGAAACCTTCCCCT TGTGTCAATTCCAGGAAAAGAAAAGCTTCTTCCAGAGGAAAAGCCAAAGAAACTGCAAACTCTACCAACCCTCCCATGGT AACGACTTTTTCTTAGAATTCATGTTATTAGACCCAACTCTATAACAAAAGTTAGCTCAGAGGTAATGATCGCTTTATCG TATATAACGACATATTTAGTTATATCTCTGGTCAATGCGGTACTTCTGGACACGGCCCCTCGTGCCCAGGATTGGAAATT TGGAAGAATATGCATGATTAGACATCTGCGCGTGGTCCATAATAGTTTTATGATAGACTCTGATACCATCTTAAAATTAG AGTCAGACCTTAACTGAATCTAAACCTTTCAAATAAAAAATTGTCTTGTTTTTCACCTTTAATTCATATGGCAATTTTCT GAATCCTAAAGCTTCTTTTACTGCAGGATGCTGAAGCTAGCGAAGACCAAAATGCTAAGCGCGGAAAGCCGAATGAGGAT GAAGGAAAAGAAAAAAATGGCTCAGTTAAGGCTGAGGAAGATTCCAAAGCGGGTACTAGTAGTGGAGGTGATGAGAAACA GAACATGAGTAGCTCAAAACCTCCTGAGCCACCAAAGGATTACATTCATGTGAGAGCAAGAAGAGGTCAAGCTACTGATA GCCATAGTCTTGCAGAAAGAGTAAGAATCACTTCCAATGACAATGACAACAAACAAACGTGTGCACGCTTTCGTTTTTGA CATTGTGTATTTGTAATAGGTTCGAAGGGAGAAAATCAGTGAAAGGATGAAGCTGCTCCAAGATCTTGTTCCAGGTTGCA ATAAGGTGCGCTGATAAGCTAGATCAGAAGTCAAAATTGGATTAGTCTGTTTGCTATTTTAACTAAATGTGTTCCTTACT AATTTGGTTTTTGAACTATTCCTTGTAGGTCACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCAT TGCAGCGTCAAGTTGAGGTGGGATGACAATCTTTTTGCAGTTGTTCAATTACTGGAGAAATCTAAACTTTCCATTACCAT TTTATTTTTTGATGTTAAGATAATAAATGATGAAATAATTGAAAAATCTCAACCTTAGAATGATGATCACAAGGTTTTAG ATTTCTTGCTCATTAAGTATGCTTCTTTCTATGTGCAGTTCCTATCTATGAAATTGTCTTCTGTTAACACCAGGCTGGAT TTTAGCACTGAAAGTCTAATCTCAAAAGATGTAAGTTTCAGGGCTCTAGACAATGGATTTGCTTTATTAGAAAAAAATAT TGGTTTTTTCTGATATGGGATTTGTTGACTTATATGGTGATTTCAGATATTTCAATCAAATAATTCTTTGGCACAACCAT TATTCCCACTAGATTCCTCAGCACAAGCCTTTTATGGGCAACAGCCACAGCAAAACTCAGCAATCCACAATAACTTTCCT AATGGAACTGTGACCCACACCTCAGTGGACCCATTACATACTGGTGATCTGTGCCAAAACCTTGGCATGCAGTTACTTCC ACTAAATGGGATTAATGAAGGTGGCTCTCAGGTAATAAATTTCTTCTAGCTTCTCTTCAGAAAAAGTGAATAAAAAGGGT CCATTTTTTCTGCAGTTTCATGCACTTTTCTCTTACTCTTCTTATCCGACGATGCAGTTTCCACTAACGTTCTCTGAAGA TGACCTCCACACCATAGTTCAAATGGGATTTGGTCAAACTGCAAATAGGAAAACACCAATAAGATTTCAGAGTATCAACG GTAACAATAAAGCAATTGAAATAGAGTAAACCTTCAAATTCATCTTTGAAAGATCCCGCGTCGGGTAGGATCGTCCCTGA AAGAAAGAAATGTCTTCATAAGTCCATGAATGTGACAATGGTTAGTTAAGTTGGTCCCTCCGTCACTTTTCATCCACTAA CGGCCAGAGATTTTTTAAGTGACAAATGGACCAACTAGATTGGCGAATGACACATTCATAGAGACTTTTGAAAGTGTTTT CCTTCTTTTAAGGACGAACTGCTCCACGTTATATATTTCGGGGACGAATTTGAGGGTTCATTTTGGAAAATATGTTAATG ACCTGTCATTTTCCGCAGGCCCAAAAAATTGATCTTCATATTATTTTCTTGTCCAATGCAGGCTCAAATCAAGTGCCCTA TGAAAATTAAGCTCTGATCACCATTCATTACGCCTGAATTGATGCCCAGAGGAATAGGAAGATTGCTGTTGTACACATCA ACAAGAGATTTAATTCGAACAACCCCATGAATTATTAAGCCATTATTGTCACTATTCAGTAGGTCTAATAGAAGCCTCTT TTGTCTTTATGTTAGCCATTCCCATTTCTTTTCTTTTTCTTCTTACCCTTTCCCTTTCCATGATTATAATTTTTAATCAT CTGGGGTTGTTCTTTTCAATTTTTTTCACTGTAAAATCTTTAGGAACGATTCTGTATTATTCTCTTGGTGCAAATTCTTG TTATTATTGCGCCAAATTGTAAGATAGTGCTAATTAAAGGAGTTTTTTTCTACCAGCTATCATTATCACTCCTCACTTTT ACAGTTTACTATTATTGTGTGCTTTATATAATTCATACATCACATCAACTCATAAAAAAATTCGTGGGTCTTCATTAAAA TCACATTAAAGGTCATGTCAATTTAACCTTCTGCTAAATCGCGTAATCTGGTGGATATGATTCTCACTTGTGTTGGTAAC CAGCTGTATTAGTGGGGTCTTTTCTAATCACAAATTTCTAATTTGAATGATTAGGACATTTGGTTAACTTAAGCTATGCT CAACCACAATTTCTGGCATTTTCTTGGTATTTTTTCCCTGTAACTCTCTTAGGATCACCAACAGCAGAAGCTTCTGTCC
CDS sequence (LotjaGi1g1v0592500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATCAATTCTTCTCTAATGGTGGTGTTCCACCTCAACTGCATTTTGACCCTTCAATGCCCACTTGGCAATCACC ACCACCACCACAATCATCTGAGCAGAACCAAGATTGCTTCTACAACACCCAAACATGGGAGAATTCAACGGATCATCACG CTCTTCACTTCGATTCCGCCATGAGTTCAATGGTTTCTTCTCCTGCAGCTTCCAATTCCAACATGTCCAGTGACAATTTC GCCATCAGGGAGCTCATTGGGAAATTGGGGAACATTGGTGGTGGCGGTGATGAGATCTCACCGGGTTTTCTCAAATCAAT GGCCTTGAATTCCACTGTGGCGGAATTCTCAGGCGATCCCGGGTTCGCGGCGCGGGCGGCCAAGTTTTCTTGCATTGGAA GTAGGAGTTTCAATGGCAGGAGTAGCCAATTGGGGCTGAACAACAATGCTGAGTTGACTCAGAGTCAGAGGTCTCCTTCA TTGATGGAAAATGGGATGCTTCTACCTAGAGTCTCGAGTAGTCCATCGTTGAAATTGCTTGGGTCTCAAATGGAAGGGAC CAATTCTCAAGAGGAATCTACAATCTCTGAGCAGAAACCTTCCCCTTGTGTCAATTCCAGGAAAAGAAAAGCTTCTTCCA GAGGAAAAGCCAAAGAAACTGCAAACTCTACCAACCCTCCCATGGATGCTGAAGCTAGCGAAGACCAAAATGCTAAGCGC GGAAAGCCGAATGAGGATGAAGGAAAAGAAAAAAATGGCTCAGTTAAGGCTGAGGAAGATTCCAAAGCGGGTACTAGTAG TGGAGGTGATGAGAAACAGAACATGAGTAGCTCAAAACCTCCTGAGCCACCAAAGGATTACATTCATGTGAGAGCAAGAA GAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTCGAAGGGAGAAAATCAGTGAAAGGATGAAGCTGCTCCAA GATCTTGTTCCAGGTTGCAATAAGGTCACTGGAAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCA GCGTCAAGTTGAGTTCCTATCTATGAAATTGTCTTCTGTTAACACCAGGCTGGATTTTAGCACTGAAAGTCTAATCTCAA AAGATATATTTCAATCAAATAATTCTTTGGCACAACCATTATTCCCACTAGATTCCTCAGCACAAGCCTTTTATGGGCAA CAGCCACAGCAAAACTCAGCAATCCACAATAACTTTCCTAATGGAACTGTGACCCACACCTCAGTGGACCCATTACATAC TGGTGATCTGTGCCAAAACCTTGGCATGCAGTTACTTCCACTAAATGGGATTAATGAAGGTGGCTCTCAGTTTCCACTAA CGTTCTCTGAAGATGACCTCCACACCATAGTTCAAATGGGATTTGGTCAAACTGCAAATAGGAAAACACCAATAAGATTT CAGAGTATCAACGGCTCAAATCAAGTGCCCTATGAAAATTAA
Protein sequence (LotjaGi1g1v0592500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENQFFSNGGVPPQLHFDPSMPTWQSPPPPQSSEQNQDCFYNTQTWENSTDHHALHFDSAMSSMVSSPAASNSNMSSDNF AIRELIGKLGNIGGGGDEISPGFLKSMALNSTVAEFSGDPGFAARAAKFSCIGSRSFNGRSSQLGLNNNAELTQSQRSPS LMENGMLLPRVSSSPSLKLLGSQMEGTNSQEESTISEQKPSPCVNSRKRKASSRGKAKETANSTNPPMDAEASEDQNAKR GKPNEDEGKEKNGSVKAEEDSKAGTSSGGDEKQNMSSSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQ DLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFSTESLISKDIFQSNNSLAQPLFPLDSSAQAFYGQ QPQQNSAIHNNFPNGTVTHTSVDPLHTGDLCQNLGMQLLPLNGINEGGSQFPLTFSEDDLHTIVQMGFGQTANRKTPIRF QSINGSNQVPYEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 26 | 98 | 73 | 6.0E-211 | ||
| PANTHER | 26 | 98 | 73 | 6.0E-211 | – | |
| PANTHER | 101 | 480 | 380 | 6.0E-211 | – | |
| PANTHER | 101 | 480 | 380 | 6.0E-211 | ||
| MobiDBLite | 177 | 208 | 32 | - | – | |
| MobiDBLite | 177 | 287 | 111 | - | – | |
| MobiDBLite | 217 | 231 | 15 | - | – | |
| MobiDBLite | 233 | 266 | 34 | - | – | |
| Gene3D | 293 | 368 | 76 | 6.9E-14 | ||
| SUPERFAMILY | 294 | 365 | 72 | 6.54E-17 | ||
| CDD | 294 | 351 | 58 | 3.777E-11 | ||
| ProSiteProfiles | 296 | 346 | 51 | 15.663 | ||
| Pfam | 300 | 347 | 48 | 2.3E-6 | ||
| SMART | 302 | 352 | 51 | 1.6E-10 | ||
| Coils | 343 | 363 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0592500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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