Transcript — View — Lotus Base

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LotjaGi1g1v0592700.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0592700
Transcript ID	LotjaGi1g1v0592700.1
Lotus japonicus genome version	Gifu v1.2
Description	DUF506 family protein; TAIR: AT3G25240.1 sulfate/thiosulfate import ATP-binding protein, putative (DUF506); Swiss-Prot: sp\|P04114\|APOB_HUMAN Apolipoprotein B-100; TrEMBL-Plants: tr\|I1KZ12\|I1KZ12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0592700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:113279833..113281314) extracted from Lotus japonicus Gifu genome v1.2.

ATCATCATTTTTTTGACCTATTTTATCCCATAAATAGTTTATTTATTATGCCATATAATTCAAGTTCTATTTGCTGGTAA TTGTGGAAATATGAAATGAAGTTGAAATTAATCGCCATCCATCTTTGGTTTTCCATGGATCCATTCTCCCCCATTCCCGG ATATGCCAAAAGCATCTACAAAATATAACAGAACCGGATAAGATGAACACGCTACGTACGGAGTAGGAACTGCTTTCCAC GAATATTCTCCCCGTAATTCCTCCCTCCCTCCTCTTCAAAACCACCATGATTCTTCAATTCTCAACTCATTCCTCCAATT CTCAAAACACACACCATTTTCATTTTCTTAATCTCTCTTCAAATCCATGGCAGCTTTTCCCAGAACAAACCAACCCACTC ACTCATTCGCTCGACTCGTCGGAACCGACCACCGGAAACTCACCTCCGCCAGCGACGACGACTCCTCCCTATCCCTCTCC GATCTCGTGCATAGCTTCCTCGAACAACCCACCGATGACTCGCTGGGTAGCGACTCGGTCGACGAATCTGCCAACTCGTC GGAGAACAACACACAAAGGTGGAGGACTGCAATTACTCTTGCACTCGCGAACAATGCGGATCCATACAGGAACACGCTCC ACGCGCACGTTTCAGAGGCAACGGAGAGGTTTGAGTTTCTGAGGGAAATGCGAAACGTTTCGGCTTTCCGTCGAAGCGTG GCGGCGTTTCTGAAAGAAAACGGTCACGACGCGGCGGTGTGTAGAACCGCGTGGGAGTCTGGCAGTGGTGTAACCGCCGG GAGCTACGAGTTCATCGACGTGGCGCGATCGGGATCGCGGTACTTCGTGGACCTTGATTTTCGCGCGCAGTTCGAGATTG CGCGGCCGTCAGGGGAATTCTTGGAGGTGCTGAGCGCCGTCCCCGTCGTGTTTGTTGGCGGAGCGCCGGATGTGAAACGC GTCGTTTTGACTGTGTGCGACGCGGCGAGGAGGTGTTTCAGGAGTAGAGGGCTTTCGGTTCCGCCGTGGAGGAAAAACCG GTTCATGCAGAATAAGTGGTTTGCCCCGTGCCGGAGAACAGTGAACCCGGTTCATGGGAACCCGGTTCGGGCAGCACCTA TAAGGGTAACTGCAGTTAACGGTGTTAGTTGCAGGTTAGTTGGGTTCGATGACGTTGTGTTGGAGGCAAGACGCGGCGGC GGCGGCGGCGTTGTCCGCACGAGATGATAGCTTTCATAATTGAGATTTAATTTTGATAAAAAAGTTCAAAATGATCAATT TTGGTAAAAAATTCCCTAGTTTGGAAAAGCGTATGTATTGATTAATGTAATTAGTTTAGGTACTTTGATGTATATGAGAT AAGATTTAGAGAATCTCTAAGATTTATAGGTACAAAATACTCCATATTTGTAATAAATCAGCTCATTAAGTTGAGTGAGG ATTATCAGTTTTTATTGTAGAATAATTTAATGAAACAATTTT

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0592700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGCTTTTCCCAGAACAAACCAACCCACTCACTCATTCGCTCGACTCGTCGGAACCGACCACCGGAAACTCACCTC CGCCAGCGACGACGACTCCTCCCTATCCCTCTCCGATCTCGTGCATAGCTTCCTCGAACAACCCACCGATGACTCGCTGG GTAGCGACTCGGTCGACGAATCTGCCAACTCGTCGGAGAACAACACACAAAGGTGGAGGACTGCAATTACTCTTGCACTC GCGAACAATGCGGATCCATACAGGAACACGCTCCACGCGCACGTTTCAGAGGCAACGGAGAGGTTTGAGTTTCTGAGGGA AATGCGAAACGTTTCGGCTTTCCGTCGAAGCGTGGCGGCGTTTCTGAAAGAAAACGGTCACGACGCGGCGGTGTGTAGAA CCGCGTGGGAGTCTGGCAGTGGTGTAACCGCCGGGAGCTACGAGTTCATCGACGTGGCGCGATCGGGATCGCGGTACTTC GTGGACCTTGATTTTCGCGCGCAGTTCGAGATTGCGCGGCCGTCAGGGGAATTCTTGGAGGTGCTGAGCGCCGTCCCCGT CGTGTTTGTTGGCGGAGCGCCGGATGTGAAACGCGTCGTTTTGACTGTGTGCGACGCGGCGAGGAGGTGTTTCAGGAGTA GAGGGCTTTCGGTTCCGCCGTGGAGGAAAAACCGGTTCATGCAGAATAAGTGGTTTGCCCCGTGCCGGAGAACAGTGAAC CCGGTTCATGGGAACCCGGTTCGGGCAGCACCTATAAGGGTAACTGCAGTTAACGGTGTTAGTTGCAGGTTAGTTGGGTT CGATGACGTTGTGTTGGAGGCAAGACGCGGCGGCGGCGGCGGCGTTGTCCGCACGAGATGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0592700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAFPRTNQPTHSFARLVGTDHRKLTSASDDDSSLSLSDLVHSFLEQPTDDSLGSDSVDESANSSENNTQRWRTAITLAL ANNADPYRNTLHAHVSEATERFEFLREMRNVSAFRRSVAAFLKENGHDAAVCRTAWESGSGVTAGSYEFIDVARSGSRYF VDLDFRAQFEIARPSGEFLEVLSAVPVVFVGGAPDVKRVVLTVCDAARRCFRSRGLSVPPWRKNRFMQNKWFAPCRRTVN PVHGNPVRAAPIRVTAVNGVSCRLVGFDDVVLEARRGGGGGVVRTR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31579:SF43 View details on PTHR31579:SF43 Search for proteins/transripts with this domain View external data on PTHR31579:SF43	13	286	274	1.8E-107	–
PANTHER	PTHR31579 View details on PTHR31579 Search for proteins/transripts with this domain View external data on PTHR31579	13	286	274	1.8E-107	IPR006502 Show description in modal box View details on IPR006502 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04720 View details on PF04720 Search for proteins/transripts with this domain View external data on PF04720	38	237	200	3.3E-57	IPR006502 Show description in modal box View details on IPR006502 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	49	68	20	-	–
TIGRFAM	TIGR01615 View details on TIGR01615 Search for proteins/transripts with this domain View external data on TIGR01615	115	238	124	1.4E-41	IPR006502 Show description in modal box View details on IPR006502 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0592700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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