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IPR006502 is a Protein of unknown function PDDEXK-like.
<p>PDDEXK_6 is a family of plant proteins that are distant homologues of the PD-(D/E)XK nuclease superfamily. The core structure is retained, as α-β-β-β-α-β. It retains the characteristic PDDEXK motifs II and III in modified forms - xDxxx motif located in the second core β-strand, where x is any hydrophobic residue, and a D/E)X(D/N/S/C/G) pattern. The missing positively charged residue in motif III is possibly replaced by a conserved arginine in motif IV located in the proceeding α-helix [[cite:PUB00044133]]. The family is not in general fused with any other domains, so its function cannot be predicted [[cite:PUB00075365]].</p> <p>This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Uncharacterized protein TCM_029854 [Theobroma cacao] gi|508780969|gb|EOY28225.1| | 5 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508700582|gb|EOX92478.1| | 4 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508773836|gb|EOY21092.1| | 5 | ||
| – | Os11g0437600 [Oryza sativa Japonica Group] gi|297728309|ref|NP_001176518.1| | 5 | ||
| – | Uncharacterized protein TCM_035453 [Theobroma cacao] gi|508724733|gb|EOY16630.1| | 5 | ||
| – | Uncharacterized protein TCM_035453 [Theobroma cacao] gi|508724733|gb|EOY16630.1| | 4 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508700582|gb|EOX92478.1| | 5 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508726246|gb|EOY18143.1| | 6 | ||
| – | Leucine-rich repeat structural protein ORF147 isoform 1 [Theobroma cacao] gi|508725177|gb|EOY17074.1| | 4 | ||
| – | Leucine-rich repeat structural protein ORF147 isoform 1 [Theobroma cacao] gi|508725177|gb|EOY17074.1| | 6 | ||
| – | 5 | |||
| – | Uncharacterized protein TCM_012425 [Theobroma cacao] gi|508773835|gb|EOY21091.1| | 5 | ||
| – | CM0545.570.nc [Lotus japonicus] gi|164564750|dbj|BAF98230.1| | 4 | ||
| – | CM0545.570.nc [Lotus japonicus] gi|164564750|dbj|BAF98230.1| | 5 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508773836|gb|EOY21092.1| | 5 | ||
| – | Uncharacterized protein TCM_029854 [Theobroma cacao] gi|508780969|gb|EOY28225.1| | 10 | ||
| – | Uncharacterized protein TCM_020740 [Theobroma cacao] gi|508713946|gb|EOY05843.1| | 4 | ||
| – | Uncharacterized protein TCM_020740 [Theobroma cacao] gi|508713946|gb|EOY05843.1| | 5 | ||
| – | Uncharacterized protein TCM_020740 [Theobroma cacao] gi|508713946|gb|EOY05843.1| | 4 | ||
| – | Uncharacterized protein TCM_020740 [Theobroma cacao] gi|508713946|gb|EOY05843.1| | 6 | ||
| – | Uncharacterized protein isoform 2 [Theobroma cacao] gi|508773837|gb|EOY21093.1| | 4 | ||
| – | Uncharacterized protein isoform 1 [Theobroma cacao] gi|508773836|gb|EOY21092.1| | 6 | ||
| – | Uncharacterized protein TCM_029854 [Theobroma cacao] gi|508780969|gb|EOY28225.1| | 6 | ||
| – | DUF506 family protein; TAIR: AT4G32480.1 sugar phosphate exchanger, putative (DUF506); Swiss-Prot: sp|A5E6W6|RRP3_LODEL ATP-dependent rRNA helicase RRP3; TrEMBL-Plants: tr|I3S566|I3S566_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0063600_LC | 4 | ||
| – | DUF506 family protein; TAIR: AT1G77160.1 hypothetical protein (DUF506); Swiss-Prot: sp|Q2SXE1|HSCB_BURTA Co-chaperone protein HscB homolog; TrEMBL-Plants: tr|B9H7N9|B9H7N9_POPTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0170000 | 5 | ||
| – | Plant-specific domain TIGR01615 family protein; TAIR: AT2G39650.1 cruciferin (DUF506); Swiss-Prot: sp|Q12Z93|IF2P_METBU Probable translation initiation factor IF-2; TrEMBL-Plants: tr|I1N576|I1N576_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0543900 | 6 | ||
| – | DUF506 family protein; TAIR: AT3G25240.1 sulfate/thiosulfate import ATP-binding protein, putative (DUF506); Swiss-Prot: sp|P04114|APOB_HUMAN Apolipoprotein B-100; TrEMBL-Plants: tr|I1KZ12|I1KZ12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0592700 | 6 | ||
| – | DUF506 family protein; TAIR: AT4G32480.1 sugar phosphate exchanger, putative (DUF506); Swiss-Prot: sp|Q7RTU1|TCF23_HUMAN Transcription factor 23; TrEMBL-Plants: tr|A0A0B2RHQ7|A0A0B2RHQ7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0445000 | 6 | ||
| – | DUF506 family protein; TAIR: AT3G07350.1 sulfate/thiosulfate import ATP-binding protein, putative (DUF506); Swiss-Prot: sp|Q8DUW4|AROD_STRMU 3-dehydroquinate dehydratase; TrEMBL-Plants: tr|A0A0L9TCH6|A0A0L9TCH6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0090100 | 5 | ||
| – | DUF506 family protein; TAIR: AT4G32480.1 sugar phosphate exchanger, putative (DUF506); Swiss-Prot: sp|P77810|LON_AZOBR Lon protease; TrEMBL-Plants: tr|I3RZW3|I3RZW3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0453500 | 5 | ||
| – | DUF506 family protein; TAIR: AT1G62420.1 DUF506 family protein (DUF506); Swiss-Prot: sp|Q5HPA2|EBH_STAEQ Extracellular matrix-binding protein ebh; TrEMBL-Plants: tr|I1KNI6|I1KNI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0009100 | 5 | ||
| – | DUF506 family protein; TAIR: AT4G32480.1 sugar phosphate exchanger, putative (DUF506); Swiss-Prot: sp|P9WM50|Y1260_MYCTO Uncharacterized protein MT1298; TrEMBL-Plants: tr|I3SXL2|I3SXL2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0056800 | 5 | ||
| – | DUF506 family protein; TAIR: AT4G14620.1 hypothetical protein (DUF506); Swiss-Prot: sp|Q8VZG1|DGK3_ARATH Diacylglycerol kinase 3; TrEMBL-Plants: tr|I3T1K6|I3T1K6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0100300_LC | 4 | ||
| – | DUF506 family protein; TAIR: AT4G14620.1 hypothetical protein (DUF506); Swiss-Prot: sp|Q8VZG1|DGK3_ARATH Diacylglycerol kinase 3; TrEMBL-Plants: tr|I3T1K6|I3T1K6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0100300_LC | 4 | ||
| – | DUF506 family protein; TAIR: AT4G14620.1 hypothetical protein (DUF506); Swiss-Prot: sp|Q8VZG1|DGK3_ARATH Diacylglycerol kinase 3; TrEMBL-Plants: tr|I3T1K6|I3T1K6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0100300_LC | 4 | ||
| – | DUF506 family protein; TAIR: AT2G38820.2 DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506); Swiss-Prot: sp|Q0IZQ3|PHT45_ORYSJ Probable anion transporter 5, chloroplastic; TrEMBL-Plants: tr|I3T1K6|I3T1K6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0408400 | 6 | ||
| – | DUF506 family protein; TAIR: AT3G22970.1 hypothetical protein (DUF506); Swiss-Prot: sp|P32828|SLX5_YEAST E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX5; TrEMBL-Plants: tr|V7BFP2|V7BFP2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0174100 | 5 | ||
| – | DUF506 family protein; TAIR: AT3G22970.1 hypothetical protein (DUF506); Swiss-Prot: sp|P40320|METK_DROME S-adenosylmethionine synthase; TrEMBL-Plants: tr|A0A0L9TYH0|A0A0L9TYH0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0193500 | 5 | ||
| – | DUF506 family protein; TAIR: AT1G62420.1 DUF506 family protein (DUF506); Swiss-Prot: sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase; TrEMBL-Plants: tr|A2Q1J3|A2Q1J3_MEDTR DUF506 family protein; Found in the gene: LotjaGi6g1v0287600 | 6 | ||
| – | DUF506 family protein; TAIR: AT1G12030.1 phosphoenolpyruvate carboxylase, putative (DUF506); Swiss-Prot: sp|Q9C6A9|CCA32_ARATH Cyclin-A3-2; TrEMBL-Plants: tr|A2Q1J3|A2Q1J3_MEDTR DUF506 family protein; Found in the gene: LotjaGi6g1v0287700 | 6 | ||
| – | DUF506 family protein; TAIR: AT4G32480.1 sugar phosphate exchanger, putative (DUF506); Swiss-Prot: sp|P25010|CCNAL_DAUCA G2/mitotic-specific cyclin C13-1; TrEMBL-Plants: tr|I1MEJ7|I1MEJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0331100 | 6 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 2.44 |