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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0598300 |
| Transcript ID | LotjaGi1g1v0598300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G38570.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FFW4|FBD16_ARATH Putative FBD-associated F-box protein At5g38570; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0598300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113814997..113816285) extracted from Lotus japonicus Gifu genome v1.2.
GAAGTGCAAAAGGTATCAAAGAGCACAATGGATGATAGAGTTAGCACATTGCCAGATGAAATACTTGGTCACATTCTCTC TTTTCTGCCAACAGAGGAAGCTGTTGCCACAAGTGTTCTATCAAAGAGATGGAGGCCTCTCTGGCTTTCCCTCACCACTC TCATCCTCGAACCTCCTATCCCACGGTTTAATCCACCGTGGGAAAGTGAGGATGAGGATGAGGACTATTACCTCTTCTTG CTGTCTCTCCTCAAGGCTAATGTGCAGCGCTCCATTTTGAAATGTAGAGCTCTTGTTGTTCTCAAATTGAATGGGAGATC TGTGAAAAGCCATTACAATTTTGACTTTCCCTTGCTCAAAGCCTTGCATTTGAATCAAGTCACATTTTCTGAAAATCGGT TTCTTGTGGAGCTTCTTGGTGGTTGTCCAGTTCTTGAGGATTTGGAAGCACATGATATATGTTTTGAGAGCAATTCATTT AAGTGTGAGTATAAGATTTTACCCAAATTGGTCACAGCAAGTGTTTCTGGAGTGTCTAAACCTGGTATTCCCCTAATAAC TTTATCCAATGCCAAGTTTCTTCGATTAGAACAGGTTTGAAAAATACTTTTTCATTTATTCTTTCTCTTTGTATATTTTT ATAATGAATTTCATATGCATATTTCAATAATCTGTGTCTGTAACTATTGCAGTGTGATATAAGGGACATTCCGATTTTTT CCAATTTAACTCATTTGGACTTGATCTTCCCATTGAGAACGGTTCCCTGGTCTTTTCTATTTGACATGCTCAAGAATTGC CCTAAGCTTCAAGATCTTGTGGTTGATAAGATTGGACAAAGGAACATAGTTGCTGATGATTTTTTTTGGTCTGGAGTTGC TGATGATGATGATGTCTTTTGTTATCCAGATGCTGTTGCAGACTGTCTTTGTTCACAGTTTAGGAACTGCAATATTACAA ATTATAGTGGAGAGAAAAATGAGAAACAATTTGCTGAATACATTATGCAGAATTCAAAATCTTTACAGGCCATGACAATC TGTGGTGTTGCTTGTTTGCCTCGAACGGAGAAGTATCATATACTTAATCAACTGTCCCTGTGCCCAAAGAGCTCTGCTAA CTGTGTGGTTTCATTTAAATGACATGTTGTAATCGAAAATTGTTGCTAATTGTCTGCTTTAATTTTTAGCATATGGATTT TGTAGTTGTGCAATTTGAAGAATATGATGGATCTTAATGTCAGATTTTGAAAATTATTTTTTCTATGCAAGGAAATTAGT ATTGTCTAG
CDS sequence (LotjaGi1g1v0598300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATAGAGTTAGCACATTGCCAGATGAAATACTTGGTCACATTCTCTCTTTTCTGCCAACAGAGGAAGCTGTTGC CACAAGTGTTCTATCAAAGAGATGGAGGCCTCTCTGGCTTTCCCTCACCACTCTCATCCTCGAACCTCCTATCCCACGGT TTAATCCACCGTGGGAAAGTGAGGATGAGGATGAGGACTATTACCTCTTCTTGCTGTCTCTCCTCAAGGCTAATGTGCAG CGCTCCATTTTGAAATGTAGAGCTCTTGTTGTTCTCAAATTGAATGGGAGATCTGTGAAAAGCCATTACAATTTTGACTT TCCCTTGCTCAAAGCCTTGCATTTGAATCAAGTCACATTTTCTGAAAATCGGTTTCTTGTGGAGCTTCTTGGTGGTTGTC CAGTTCTTGAGGATTTGGAAGCACATGATATATGTTTTGAGAGCAATTCATTTAAGTGTGAGTATAAGATTTTACCCAAA TTGGTCACAGCAAGTGTTTCTGGAGTGTCTAAACCTGGTATTCCCCTAATAACTTTATCCAATGCCAAGTTTCTTCGATT AGAACAGTGTGATATAAGGGACATTCCGATTTTTTCCAATTTAACTCATTTGGACTTGATCTTCCCATTGAGAACGGTTC CCTGGTCTTTTCTATTTGACATGCTCAAGAATTGCCCTAAGCTTCAAGATCTTGTGGTTGATAAGATTGGACAAAGGAAC ATAGTTGCTGATGATTTTTTTTGGTCTGGAGTTGCTGATGATGATGATGTCTTTTGTTATCCAGATGCTGTTGCAGACTG TCTTTGTTCACAGTTTAGGAACTGCAATATTACAAATTATAGTGGAGAGAAAAATGAGAAACAATTTGCTGAATACATTA TGCAGAATTCAAAATCTTTACAGGCCATGACAATCTGTGGTGTTGCTTGTTTGCCTCGAACGGAGAAGTATCATATACTT AATCAACTGTCCCTGTGCCCAAAGAGCTCTGCTAACTGTGTGGTTTCATTTAAATGA
Protein sequence (LotjaGi1g1v0598300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDRVSTLPDEILGHILSFLPTEEAVATSVLSKRWRPLWLSLTTLILEPPIPRFNPPWESEDEDEDYYLFLLSLLKANVQ RSILKCRALVVLKLNGRSVKSHYNFDFPLLKALHLNQVTFSENRFLVELLGGCPVLEDLEAHDICFESNSFKCEYKILPK LVTASVSGVSKPGIPLITLSNAKFLRLEQCDIRDIPIFSNLTHLDLIFPLRTVPWSFLFDMLKNCPKLQDLVVDKIGQRN IVADDFFWSGVADDDDVFCYPDAVADCLCSQFRNCNITNYSGEKNEKQFAEYIMQNSKSLQAMTICGVACLPRTEKYHIL NQLSLCPKSSANCVVSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 2 | 38 | 37 | 9.974 | ||
| PANTHER | 2 | 47 | 46 | 1.3E-70 | – | |
| PANTHER | 2 | 47 | 46 | 1.3E-70 | – | |
| Gene3D | 3 | 330 | 328 | 1.5E-22 | ||
| SUPERFAMILY | 3 | 85 | 83 | 6.28E-13 | ||
| Pfam | 6 | 39 | 34 | 5.4E-7 | ||
| SMART | 8 | 48 | 41 | 1.1E-5 | ||
| PANTHER | 73 | 335 | 263 | 1.3E-70 | – | |
| PANTHER | 73 | 335 | 263 | 1.3E-70 | – | |
| SUPERFAMILY | 80 | 235 | 156 | 3.69E-10 | – | |
| Pfam | 264 | 305 | 42 | 7.1E-10 | ||
| SMART | 266 | 338 | 73 | 2.6E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0598300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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