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LotjaGi1g1v0598600.1

Overview

Field Value
Gene ID LotjaGi1g1v0598600
Transcript ID LotjaGi1g1v0598600.1
Lotus japonicus genome version Gifu v1.2
Description Phosphoglycerate mutase family protein; TAIR: AT3G60450.1 Phosphoglycerate mutase family protein; Swiss-Prot: sp|P57075|UBS3A_HUMAN Ubiquitin-associated and SH3 domain-containing protein A; TrEMBL-Plants: tr|G7LBM5|G7LBM5_MEDTR Phosphoglycerate mutase family protein; Found in the gene: LotjaGi1g1v0598600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:113935666..113941220) extracted from Lotus japonicus Gifu genome v1.2.

AAGAGTGACCTTGCACGTAAGATTTATTGATTGATATACTCTACACACTCAAATACTAGCTTGAGTATTGGAGACAATGT TTCAAAGTATTCACCCAATCCGATTCAACCCGAATATACCAAGTAAGAACACCGTCAAAGAAATTAGCAAATTGCTCTAA AACTATTCGCAAATTATTGTACACTTGCTTAGCATTATATATGAGCGTCAAACTACACATAACATCAACATAATTAGTTA TAATTTTCAATCATTTAGTCGAGGTTAGATCTCTGTACCGTGTGTATTAAGAAAGGTTTATTAACAAATACATACTTACT CAATGTAATACCAGAACCACTAGAAGATTAGTCTCATAGCGTTCAATTATGAGATAATACCTTATTATTAAAAATTAAGG TTTGCATTACCTTTATAAATGTGAATATATGCTCTATCTCAAACCAATGTGGGAGTTGTAACATTTACTCTCTCCGTTCC TTAATATAAGTCACATTTTATGAAAAAAATTTGTTCATAGATATAAGTCAGCATTAAATAGTTTTAGCATTAAATAATTT TTTCTAAATTCACCCTCATATTTAATATGAAAGAGATTATGAACTTTTTGAATATTAACTTGGAGAGAGAAAATTATAGA AAAGTAAATAAGGGTAGTCTAGGAAAGTTAATCATTTCCTTTACAAATTTATTATTACTAACGGCTTTTCTTAATATAAG AAAATTAGTTATTTGTGACTTATAAATAGAATCGGAGTGAGGATCTCTCTTCCCTTTATATCGTGATGGGTTTGAGTTAT GAATAAACAATCCTTCTTATAAAACTGAAATTAGGTGTAACTTACCATATGGAAATTTGAAATAATTTTCATGAAGACTT CAACAGCCACTTTGAAATTTCTCAATTTCTTCAAGAAAACACTTGTGTCACGAAACTCCCATATTCCCCTACCCTTCTCT TTATTTTAAATTCTGCATCTCAAAAAACCTCTCACTTCACTCAATCTCGCTCTGTAATCTTCTGTATATTCACAGTGAAG ATGGATCCAACAGGAAACCACAATCCAGAAAACAAACGTCTCGTTTTGTACCAAAACGTCGTCGTTATGAGGCACGGCGA CCGCATCGACAATTTCGACCCTTCCTGGGTTTCCACGGCGCCGCGGCCATGGGATCCGCCCCTGGTTCAAGCCGGTAAGG TTCGGGCCTTCCAAACCGGCAATAGGCTCCGACAGGGTGTCGGATTCTCAATCAACCGGGTCTTTGTGTCTCCGTTCCTC CGCTGCGTTCAGACTGCTGCTGAAGCCGCCATCGCTATCTCTGCTGTTGACGAAGGTCCCGTCGCCGTCACCGGTGAAGG CGTTCCTATTGATCCTTCGAAAGTCAAGGTCAGAACTCAGAACTCAGAAGTCGTTTGACTTCTAAACTCTTTTTAATTTT ATAATCAAAATATGATTATTTTTTTTTTTGAAAGTTGTGATAGTTTTTGTTGAAAATGGTAATTACTAATTATTGCTTAA AAAACCTTAAGCCAAAAAAAACTGCGTGATTTTATTTGATATTCTAGTTAATAATTATTCATCTCCTTAAATGGGTAAAA TTGCAATTTTAATATTTAGTTGTTTCTTACTTTGTTTATGATATGTTGCTAATGTGAAACGCCAATGCAATATGGCCACT GATTTCATGTCGAAGTGTGTATTTTCTTTTTCTGATAATGTATGAAATGAGGTGGGTCCAATTGGTCTAGGTGCAATCTT GTTAGATGATCCATCCTCCTCCTCTATTTCTAATTAATGAATTGTTCAAGTTTGCCCGTAAAAAAATATGTTGCTACTTG CTACATGGAGTATAAAATACACCCTGTTCTTGCCTTTCTTAAAATACTCTTTTGTACCAATTAGGATTATTGATATTTCA ATCTGTGGTTACTGTTGGAAACTACTTGTCTGAAGAGCCAATAGAAAATGATTTTTTTTTTTTAAATTTGCTTTGTTTGG TTCACGGGAGAAAGTGAGAAAAGAGAAAACAGAAGGAGTGAAAATTGTGAGGAAATAGTAGAATTTGTTGGTTGTTTAGT AAAAGATAGAAACAGAAGGGAAAGTAACCTGACCCACCATAATGGAGAGAAATAGGGATACAGGAATCTCAACTCAAACT CTCTTCAGAATCAGTCCTAAGGAGCATAGTTTATAAGAGAGAGGGTAGGATAAACTATAGACAAAGTTTGGGATGAGATT TGTTCATAAGATGAAGTGGTTGTAGGAAGACTGTGTGTCACTTGAGTTTAGTCCTTCAGGGGTCAGCTCATTGTCCCGTT AAAAATATAGGGGTGAAATTCAGTAATGAGTTTTGTATGAAAAGGAAAATGTTTTGTACTCACTTAGGCAAAGGGTGAAA GGAGGAGAAGATAGATGAATGATAGTTGTGATATTTTCTATGACGTCATAAGAACTGAAAGACATAGAGATAAATGAGGT GTATGTAGGGTGTCGTTACTGTCTGGAGAATGGGATTCATATGAAATGTTGTTTGAAGAACCAACCCATTGACTACTGCT GGAAGTGAAACTCTGATGTAATGTGGTATATGCGGATTTGATGATCAAATTTGACTGACAAGTGCTGATCTCTTGTGTTG CACGACTGCAGTTATTTAAGTTGCTAAAATTCTCTCTCATTTCCACTACTGCAGGTCTCTGTTGAGTATGGACTATCTGA AATGATGAATAGCGAGGCTATCCGCAACAATGTTGCTCCTAAAGATGGAAATTGGGGTTTTGATGTATCAGAGCGTGAAG CCTTGCTCCCAGCTGGGACAGTGGATAGTAATGCTGAAAAGGTTTATAAAAAGGTATAGAACTTCATCTCAATTTTGTTA TGAACTTTCTTGCAGTTAAATATGCTTACAAACATTGCTGGAGCTGATGAATTAAAACTTCTGTTTCCTGATAAAAATTT CAGTTGCCCCAGTGGGAAGAGCCAGTTCTTGAAACAAGGGCTAGGTATCACAAAACAATCAAGGAGCTTGCAGATAAATA TCCTACTGAGAACTTGCTGTTTGTTACACATGGTACAAAAATTATTTCCTGTCTATGTAACTTTTAATCTGAAAAGGCAA TTTTTAATTGTGATACTGCTTTCTAACCTTTGTCCCTTGGTTACATGAATAGGATCAGGAAAAAAAATTTAAACAAAGCA ACTAAGACCATCTAATTATTGTGTTTGATCTATATGGAGTTGCATTATAAGTTTGTAATTGAATTGAACCTTTGCAGGAG AAGGAGTTGCTGTGGCTCTTACTACGTTCAAAAAGGATGCTGCAGTAAATGAAGTGCAGTACTGTGGATATGTAGAATTT AGACGTCCAATTTACCAAGAAGATCACACATTTACTAGTGGAGACTTCGATTTACTTACTCAGAGTGGTCAAACTGGTGT GACCTATTTCACTTCCTCCCAACAAGGCCTTTGAGTGAAGAAAGATATCAACCAAAAACTGATCAGGAATTTCAAGTTTA TGAGCTTTTACTTTGGAGTTTGAAGAAATAACTTTGTTGTGGACACAATGCAATTAATGAATAATATGGAAAGTGGGGTT TAAAATGTTGGGATAATATTTATTATTCTTTTATGCAAAATTATTTATAAATTTGTCTTTTTTGTTTGTTGTAAAGCTGT GCTACAAAAAATCGTTTTTAGTTCCGTGGAATGCTAAGATAGGCTTACAGCATTATGCCACATAGAATCACATTTTAGAA GCGGTTACCTTCCTTTTAAATTTTAGTTAACTTAAAAATATATTTTTTGATGCGGTGAAAATCAATAAGATATATGTGTA TACAAAATTTACACTGGCTCATGAATTTATGAATTAGGCATGTCTAACTATATTTTACAAACTATCGAAAGGAATGTTGC ATTTTCATTCTTCAAAAGGTGCCAAAATGCATTGACACACACTAAGGCATATAAAAATTTACCAAGATCTCAAAGCAATT CATTTCTCCCACTCCACCCCCAAAATCAAGATAACATCAATGAAAGATGGTCTGCATCCCAACTGCTCACTCTTTATTTG TATGAATTCCAAGGATATTGCTAACTTAAGCCCATGTGGAACTGATTTGCAAGCATTCAAGACCCCTCATCAAATCTGCT TAAAGAAGAAAACAAAAAATGCTTATTGAATTAGATGTTATTTTCTTTCATTTAATGCTTCCATCCAGCAACTAGAATCC TTAATACTCATTAGCAAATTCAAAGTTTTAACACAACCAACTGTGAAAACCCCATGGTTGGTAAACTATGAATTATACTT TGGCAGATACTGTAATTTACACTATTCAGATTGCAGATACTTTTTCTTTGTAAACCAAAAACATGCTTACTTATTCTGTG TACGTCGAGGTAAACCTAGCTTTGCTCTTAAATTTGCACCTGCTTTGATGAGATCTTCCACCTATATGCAAAAATATGAA GTGCATCAGAGTAGTAATATGTGCATATAAAGCATCTGAGAATAACAAACAAGTATGAAGAGCATTAATATAGTTCTATT GACATCTAGAATAAGATTTTTCCATTTCCTATTCCGACAACAACAAAATTATCTTCAAAATAAGAATGCAGATACTGGAA CATGAAATGGGTTGTGACCTGACTTCCTTAACACATCAATCATAACCATCTGAAGTATCATCCATTACAAGCTCCCAAAT AACTGAGTTATGATACTTTAGGTGTCCAAATTGGTTACACTATCAAAATACAAATTACAGGTTTGGGGTGTTTCCAAAAC CCCTCTAAAACCCTCTTCTAGTTATATACTTTTAGTTCTCCCACATTAGGGGGTTTTGGAGCATATGGAACTCCCAAACA AATGAAGGACTTACCCCCCCCTCCCCCTCTCTTGCCTTCCACTCAAGCCCGGCTTAAATGCATTCTATACCTTCCATCAA CTGAACTAATCCTCTCAATTTAATCTGTTTCACATAATTTCCTTGTATTTTTAATAAAACTCATCAAGCTTTTCACTTCG AGGATAAACATAATACTCGGTGACATACTTACATTTTGCCTTTAGTCATAGATTTGTGTGTGTGTGAGTCCATGGCTATC GGTAAGGATAACTCAAACTTTTTGGCATTCATCACCACACATTTCTATTATGCCCAACGCCTTCACGATACTTCATATTG AGAAGTGCAACATGGAAAAACTAGCTTTGACATCAATATTATTACATGTGCACAGTATTTAAGTCAAGGAACTCTTTGAT TGTTCCAAAATACCAAGGAGAGACTCTTAGGCTCCCATACTTAGAATCCCTGGAACAAAAGGAGTAGTAATATATCCTAA ACTATCACCATATTTAGGCCCCGTTTGGATAAACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCGC TTATTCATAAGCTATTTTTAAAAATTTACTGAAATAAATTAAAAATAAGCTGTGTATAAGCATAAACTGTTTTTCATAAG CTATCCTGAGTAGCTTATGAAAATAAGCTGAAAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0598600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATCCAACAGGAAACCACAATCCAGAAAACAAACGTCTCGTTTTGTACCAAAACGTCGTCGTTATGAGGCACGGCGA CCGCATCGACAATTTCGACCCTTCCTGGGTTTCCACGGCGCCGCGGCCATGGGATCCGCCCCTGGTTCAAGCCGGTAAGG TTCGGGCCTTCCAAACCGGCAATAGGCTCCGACAGGGTGTCGGATTCTCAATCAACCGGGTCTTTGTGTCTCCGTTCCTC CGCTGCGTTCAGACTGCTGCTGAAGCCGCCATCGCTATCTCTGCTGTTGACGAAGGTCCCGTCGCCGTCACCGGTGAAGG CGTTCCTATTGATCCTTCGAAAGTCAAGGTCTCTGTTGAGTATGGACTATCTGAAATGATGAATAGCGAGGCTATCCGCA ACAATGTTGCTCCTAAAGATGGAAATTGGGGTTTTGATGTATCAGAGCGTGAAGCCTTGCTCCCAGCTGGGACAGTGGAT AGTAATGCTGAAAAGGTTTATAAAAAGTTGCCCCAGTGGGAAGAGCCAGTTCTTGAAACAAGGGCTAGGTATCACAAAAC AATCAAGGAGCTTGCAGATAAATATCCTACTGAGAACTTGCTGTTTGTTACACATGGAGAAGGAGTTGCTGTGGCTCTTA CTACGTTCAAAAAGGATGCTGCAGTAAATGAAGTGCAGTACTGTGGATATGTAGAATTTAGACGTCCAATTTACCAAGAA GATCACACATTTACTAGTGGAGACTTCGATTTACTTACTCAGAGTGGTCAAACTGGTGTGACCTATTTCACTTCCTCCCA ACAAGGCCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0598600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDPTGNHNPENKRLVLYQNVVVMRHGDRIDNFDPSWVSTAPRPWDPPLVQAGKVRAFQTGNRLRQGVGFSINRVFVSPFL RCVQTAAEAAIAISAVDEGPVAVTGEGVPIDPSKVKVSVEYGLSEMMNSEAIRNNVAPKDGNWGFDVSEREALLPAGTVD SNAEKVYKKLPQWEEPVLETRARYHKTIKELADKYPTENLLFVTHGEGVAVALTTFKKDAAVNEVQYCGYVEFRRPIYQE DHTFTSGDFDLLTQSGQTGVTYFTSSQQGL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF015897
7 269 263 2.1E-106
IPR012398
PANTHER
PTHR16469:SF43
16 264 249 2.9E-94 –
PANTHER
PTHR16469
16 264 249 2.9E-94 –
Gene3D
G3DSA:3.40.50.1240
17 239 223 5.8E-37
IPR029033
SUPERFAMILY
SSF53254
19 228 210 2.75E-21
IPR029033
CDD
cd07040
20 85 66 1.67116E-11 –
Pfam
PF00300
21 92 72 3.9E-6
IPR013078
Pfam
PF00300
167 217 51 9.1E-5
IPR013078

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0598600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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