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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0599200 |
| Transcript ID | LotjaGi1g1v0599200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT2G44940.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q8LBQ7|ERF34_ARATH Ethylene-responsive transcription factor ERF034; TrEMBL-Plants: tr|A0A0L9U6A8|A0A0L9U6A8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0599200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114003832..114005982) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTCACTCATTATTCCCCTGTACCTCTAAATCAATCAAACCCTCCCTCTTGGGATAACGTATCAACATGGAAAATGAT GCTCAAGAAAACTTGTTTGGCACATCCTCCTCCTCCTCATCAACAACACCAACAACATCTTCTACTTCCAATTCAAATTC ATGCACCAAGAAAAGCTCCAAAAGAAGGGATGCAATTGCAGACTCAGAAAATGACAAAAAAAGGAAGAGAAGTGAGAATG AAACTAAACACCCCACTTACAGAGGAGTGAGAATGAGAGCTTGGGGAAAATGGGTGTCTGAGATCAGGGAGCCAAGAAAG AAATCAAGGATATGGCTTGGAACATACCCTAGTGCTGAAATGGCAGCAAGGGCACATGATGTGGCAGCTTTAGCTATCAA AGGCCATTCAGCTTTCCTCAATTTCCCTGAATTGGCTCAGGATCTTCCAAGACCTCTCAGCACATCTCCCAAGGACATTC AAGCTGCTGCTTCAGAGGCAGCAGCCAGTGTCGTTTCCAGTGTTTTCAGAACCGGACCGGTAATTGAACCGGTATTTTCA GAGGCTAAGCAATGTCAAGCTGAGGCTGAACAAAGCCAAGGAGAACAAGCTTCATCTTCAACTCTTTCCATGGAGAGTAC TCTGGAGTCTTCAAGTAATTCTGATTCTCCCTCTACTGCAGATGATGATGATTCACTGTTTGACCTGCCAGATCTTTTCA CTGATGGAAGCAATGGACTTCTCTCTTATTCTTCTTCTTTGTATTTATGTTCTGTTGAAACTGGATTCAAGCTTGAGGAG CAACTTTTGTGGGAGAACTACTTGTAACTGGAACTGGAAATGTTTCATATTTGAAAAGATAAAGGACAATAAATTTTAGA GTTTGCCTTCAAGTTTAATCACTACCATGGTTTTTAAAGCAAAGTCAAAATGGACATTGCAGCCACAATATCCGCGACAA GGTTTTAAATTGCAGTTGCAGTTCAAGTCATGGGTGCTTCGCGGAATTGCAGGATGATTTGAAGGCCTCAATTGCAGTTG CAGACAACAATTTAGAATGTGTAATTTTTCCAAAGATAGCGACGTGCCTGCAGGACAGCAATTTAAAACATGGATCACTG TGTTATGATTGCAGAATACCACTTGAGGGAAAGTTTTCATTTGAATTTGTAAATGGCCATTGTCTGTTGTTAATTTTGTG AATTTAGTTGTGTAGTGATTGGATTAAAATAGAAAGCCAAAAAAATTGATGCTAAAGATGGTAAATAATGTATGGCACTG TACAAAGCAATAAAAATCTCTTTTCCGATGTACCAAAAAAAGCAATAAAAATCTTCTTCACTCGTATTTCAGATTGGAAT TTGATTAGACATGAACAACCAGTGATGGAGCCATAGGGTGGACATGCTACTTCCATGGCCCCAAGATTTTCAACTTCTTT TGATGTAGGTATATAACATAAGTTGTGCTCCACTCGTTTTCCATTTTCTTTCACATAGTACATAGCAGCACAAACAAATT TAGCCTCCTAAGTCAAAGTCTTTGCTCGGCCATTATGTACATCGACAAACTTATATATGGTTGCTACTGCCGAGGTAACT TAAGACCATTTCCCTTAATGTTGTTTCCACTCGAATTCACTAAGGTCAGTGACTCATTTTTCACCGCCAGATACTTCATC CGAGGATAAGCAGAGAAGGTAATAGAGTGCAAATCCACCATCCATCCATCTGCACGAAGGACGTTCGACAAGAGGAAATC ATAAGACATTGAAGGGACCTGAAACACTCCAACCTTTTTCTATGTAAAGGGACATAAGATAAACTAAGATACACACATTA CTCAACCCTTGCTCACCACTAAAACTGTAAGTGACTTGAAGGTAAGACTGTTTTTACAAGTACCACTTGAGGAGGGTCCA ACACCACGGTGGAGGAGCATCCGGAAAGAGGACAGGCATGAGGAGTTCGACCAGAGCACCAGACACCCTCACTAGAAGTA TCTAGCTCACCCCGTCCCCGTAAGTTCAACATCTTGTTCGTGTGATTGGTTAGATTAGTCCAATCAGATATCAATTTAAT AGCATATTTGAAAATTCTTCTATAATTAATTCAAAAGTTGAAATGAATTCTTAAGAAAAACTACTCTCTAA
CDS sequence (LotjaGi1g1v0599200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATGATGCTCAAGAAAACTTGTTTGGCACATCCTCCTCCTCCTCATCAACAACACCAACAACATCTTCTACTTC CAATTCAAATTCATGCACCAAGAAAAGCTCCAAAAGAAGGGATGCAATTGCAGACTCAGAAAATGACAAAAAAAGGAAGA GAAGTGAGAATGAAACTAAACACCCCACTTACAGAGGAGTGAGAATGAGAGCTTGGGGAAAATGGGTGTCTGAGATCAGG GAGCCAAGAAAGAAATCAAGGATATGGCTTGGAACATACCCTAGTGCTGAAATGGCAGCAAGGGCACATGATGTGGCAGC TTTAGCTATCAAAGGCCATTCAGCTTTCCTCAATTTCCCTGAATTGGCTCAGGATCTTCCAAGACCTCTCAGCACATCTC CCAAGGACATTCAAGCTGCTGCTTCAGAGGCAGCAGCCAGTGTCGTTTCCAGTGTTTTCAGAACCGGACCGGTAATTGAA CCGGTATTTTCAGAGGCTAAGCAATGTCAAGCTGAGGCTGAACAAAGCCAAGGAGAACAAGCTTCATCTTCAACTCTTTC CATGGAGAGTACTCTGGAGTCTTCAAGTAATTCTGATTCTCCCTCTACTGCAGATGATGATGATTCACTGTTTGACCTGC CAGATCTTTTCACTGATGGAAGCAATGGACTTCTCTCTTATTCTTCTTCTTTGTATTTATGTTCTGTTGAAACTGGATTC AAGCTTGAGGAGCAACTTTTGTGGGAGAACTACTTGTAA
Protein sequence (LotjaGi1g1v0599200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENDAQENLFGTSSSSSSTTPTTSSTSNSNSCTKKSSKRRDAIADSENDKKRKRSENETKHPTYRGVRMRAWGKWVSEIR EPRKKSRIWLGTYPSAEMAARAHDVAALAIKGHSAFLNFPELAQDLPRPLSTSPKDIQAAASEAAASVVSSVFRTGPVIE PVFSEAKQCQAEAEQSQGEQASSSTLSMESTLESSSNSDSPSTADDDDSLFDLPDLFTDGSNGLLSYSSSLYLCSVETGF KLEEQLLWENYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 67 | 67 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 16 | 248 | 233 | 5.7E-79 | – | |
| PANTHER | 16 | 248 | 233 | 5.7E-79 | – | |
| MobiDBLite | 34 | 65 | 32 | - | – | |
| SUPERFAMILY | 63 | 121 | 59 | 4.9E-21 | ||
| ProSiteProfiles | 63 | 120 | 58 | 22.998 | ||
| Pfam | 63 | 113 | 51 | 2.1E-12 | ||
| SMART | 63 | 126 | 64 | 5.5E-36 | ||
| Gene3D | 63 | 122 | 60 | 2.3E-28 | ||
| PRINTS | 64 | 75 | 12 | 1.0E-9 | ||
| CDD | 64 | 122 | 59 | 4.72089E-32 | ||
| PRINTS | 86 | 102 | 17 | 1.0E-9 | ||
| MobiDBLite | 171 | 204 | 34 | - | – | |
| MobiDBLite | 171 | 207 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0599200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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