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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0603100 |
| Transcript ID | LotjaGi1g1v0603100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G60730.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q84R10|PME36_ARATH Probable pectinesterase/pectinesterase inhibitor 36; TrEMBL-Plants: tr|I1N7G8|I1N7G8_SOYBN Pectinesterase; Found in the gene: LotjaGi1g1v0603100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114809170..114811804) extracted from Lotus japonicus Gifu genome v1.2.
TTATAGTTTTGAGTTAGTTAATCAGTCTGGTCAATGATTAAGCTGCCCGGTATCCATTAATCTCTACAAAAGCTCTTGGA TTGTATCACCTCATTTTACATATCTTCTGAACAATATAGAACCTCCTTGGTTTACTATGAGAGTTCTCTTTTCCTCAAAC TACCACATTAGTCCCATTTTTCAAACATGGTATAGAGTTTCACCAAAGGATGTCACTACATTTGCCTTACCTTCCATTTT TAGACTTTCATGGCTGTCACTAACTATTTCCATGGTGCTGCCAACAACTCTTTCCATCAAGCTCTCTCTCTCTCTGGTAA CATTTATCCCCTAGATATATTCCTATGGAGGATTGTGAAAATGGAGAACAAATCGTAGAAGCAACCGCACGAGCTTTACG CTCGACTTTCTGAATCATTCGATCTTATTCACATGATGAAGCTCCATATAAGTCCGGTATATCCCTTTGGAGCTATCCTG TAATTGCATGGTGTAATTTGTTCTAAATCCATTGATGATGGTTTCAAGGTGTTTGACAAAATGCCTCAAAGAAAATACTT TGTTCAGATTCTTTTGAAAGACTTTTAGCTCGATAGATTGAATCACACTTCAAGCAATTGGAATTTCCAAGGGCTCAAAT TAGTGAGATTAGCGCTTGGTTCATCAGGAATTTAAATGACTGCAAGATCAGTGTGTTCTATCTGGCGGATTTTAGGGCTC AAGATAGGAGCCAGTACCGGGTGTATCAGTTTTTATTTTGTTAGTTAGTTAGATTGATAAATGGTTAAACTTATATTAAT CTCTAGAAAAACTCAAGCACCACCTTATTTTACACATCACCTTTGAAAAATATGGAACCTCCTTGGTTTGTTTTCTTTTG TAAGAGTTCTCTATTTCTCGCAGTGCCTCATTCATCCCATTTTATTCACTTCTTGTGAGCCTAAACCTGCGCTTTAGAGC TACCAATAAAGTTATGATGCAATTGCCGAATACACTAACTAAAAGCTACTTGCTATAGCATAAGTGTTGAAATGTTGTGC ATTCTATCATTTTTCTTTTGATTTTGCTTTTTTGTCCTGAATTTTTATTTCTGAATCGAGATAATCAATGATATTTATTG CTGTAAAATTAAAAAGAATGCCTCTGATGTAAAGATTGAAATCTTTGAGTAACTTGGTGACAGAATGTTGATAAGGCACG AGATGTTTACCTTTGTTAACAAGTTTCAATCTTGTTTTTGTTTGTCTGTAGAGGCACCTCAGGTAACAGTATCCGAATCA GATGCTGGATTTCTAGCATCATGGAGTAGTGAGACTTCTAGTGCAGACTTCATCGTGGCACAGGATGGTTCAGGTACCCA CAAAACAATCAGGGACGCCGTTGTTTCCCTGGCTGCAATAGATAAAAAACGTCGTCCTGCAAGATCCATTATTTATGTTA AATCAGGAGTCTACAATGAGAAAGTTGAAATTGGACACAACTTGAAGAATGTGATGTTTGTAGGAGATGGCATAGACAAA ACTATTGTCATTGGCAATAGAAATTTCATTGATGGCTATTCTACTCTTAGCTCAGCTACATTTGGTGAGACTCGTTTATT TCTCAAACCAAGTTTACAGTGTCAATTAAAGGTTTCATTTGCTAACTTCATAATTGTATCAAACAGATGTATCTGGGGAT GGGTTTTGGGCCAGAGATATGACATTTGAGAACACAGCAGGTCCTCAAAAGCATCAAGCAGTGGCACTAAAGGTTAGCTC CGACCGATCAGTCTTCTATAGATGCAGCTTCAAAGGTTATCAAGACACTCTTTTTGTGCATTCAAATAGGTAATTTTACA GAGACTGCCACATATATGGCACCATTGATTTCATATTTGGTGATGCCTCAGTGGTATTCCAAAATTGTGACATCTATGTA AGGAGACCAATGGACAATCAAGCCAACTTCATCACAGCACAGGGAAGAGATGATCCTCATAAACCCACTGGGATTTCAAT TCAGAATTGCCAGGTTAGGCCTGCATCTGATTTTGACAATTCAAAGGGCTCCATGATCAGGAGCTACTTAGGGAGGCCAT GGAAAAAGTACTCAAGGACAGTGTTTATGAAGACAGATTTAGATGGGTTGATTGATCCAAAGGGATGGGGTGAGTGGGAT GGAAACTATGCACGTTCAACTTTATACTATGGAGAGTATATGAACACGGGAAGTGGTGCCTCTACCCAGTACAGGGTGAA CTGGCCTGGTTTCCATGTTTTGCAAACAGATATTGAGGCATCACCATTCACTGTGAGCCAGCTATTGCAAGGAGAGCAGT GGATTCCAACTACAGGGGTTCCATTCTGGTCTGGAATTTAAGCTGGGAAATTACCTTAACTGATGCAGCTAGATGAAAGT ATTGGATCAATGGGTTGTAACTTGTAAACCATGCACCTCTGGGATTGTGTTACTTTATATTGTATCTTTAATTGCTTGCT TGCAAAAATAAAATAAATTGCATGCCATACACCTTTCATAGGTCCATGAAACAAAGATAAGCAACTGATTAAATGACTGT AATTGTTGATTTGGCATGTATTTAGTTAAATGACACAGCATATATTTCACATGCCCATCCCATAGGGTGGTGCTG
CDS sequence (LotjaGi1g1v0603100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAATCAAGCCAACTTCATCACAGCACAGGGAAGAGATGATCCTCATAAACCCACTGGGATTTCAATTCAGAATTG CCAGGTTAGGCCTGCATCTGATTTTGACAATTCAAAGGGCTCCATGATCAGGAGCTACTTAGGGAGGCCATGGAAAAAGT ACTCAAGGACAGTGTTTATGAAGACAGATTTAGATGGGTTGATTGATCCAAAGGGATGGGGTGAGTGGGATGGAAACTAT GCACGTTCAACTTTATACTATGGAGAGTATATGAACACGGGAAGTGGTGCCTCTACCCAGTACAGGGTGAACTGGCCTGG TTTCCATGTTTTGCAAACAGATATTGAGGCATCACCATTCACTGTGAGCCAGCTATTGCAAGGAGAGCAGTGGATTCCAA CTACAGGGGTTCCATTCTGGTCTGGAATTTAA
Protein sequence (LotjaGi1g1v0603100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNQANFITAQGRDDPHKPTGISIQNCQVRPASDFDNSKGSMIRSYLGRPWKKYSRTVFMKTDLDGLIDPKGWGEWDGNY ARSTLYYGEYMNTGSGASTQYRVNWPGFHVLQTDIEASPFTVSQLLQGEQWIPTTGVPFWSGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 143 | 143 | 8.9E-78 | – | |
| PANTHER | 1 | 143 | 143 | 8.9E-78 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Pfam | 1 | 129 | 129 | 6.3E-50 | ||
| Gene3D | 1 | 143 | 143 | 1.3E-46 | ||
| SUPERFAMILY | 2 | 142 | 141 | 3.45E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0603100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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