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LotjaGi1g1v0608900.1

Overview

Field Value
Gene ID LotjaGi1g1v0608900
Transcript ID LotjaGi1g1v0608900.1
Lotus japonicus genome version Gifu v1.2
Description 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; TAIR: AT3G21420.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q39224|SRG1_ARATH Protein SRG1; TrEMBL-Plants: tr|A0A072U060|A0A072U060_MEDTR 2OG-Fe(II) oxygenase family oxidoreductase; Found in the gene: LotjaGi1g1v0608900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:115332051..115335244) extracted from Lotus japonicus Gifu genome v1.2.

CAATTTCAACAAATGAACTTTAAACTAATCAAACTCTTGTGATGTTAACTGGATTGACAAGGTAGAGGGGATCTTTCTTT CATGAAAAGCACAATATTCCCTGCACTAACAAACAGATGAGCTTTCCATATAAGGACTAGTCCTTCAAAGCATTTTCATA CCTCATAGGTAACAATCTAAGCTGAGTAAAGATGAGTCCCAGTCAAGTTGATGAATCTGTAACTATGACAGAGGAAGCTC CCACTTTTGCTCCATGTTTACCAGTACCCAATGTTCAAGAAATGGTGAGGAAGAATCCTTTGCAGGTTCCTAAAAGATAT GAAAGGAGTGAAGAAGAGATGGAGAAAGAAAACTACAAGTCTCACCTTTCATCTGAGATCCCTATAATTGATTTTTCACT ACTCTCTGATGGTAGCAAAGAGGAGTTATTGAAACTGGACACAGCATTGAAGGAGTGGGGTTTCTTTCAGGTAATTCTTG ACCACTAGAATTGTGAATCACATAAAAAAAATACTCATAAGAATATCTGAACAAAGAAATTCTGTATTCATGGTTTAAAA TCAAGGTCCGCGACGTCAAGGTTTTGGAGGTTTCCAAAACCGGAACACACTGTGATTTTGGCCTTGACAGACACGTTTGT TCACAATTTCCTGCAATATAAAGGGCTGCAATGCAACCGTGACTCGATCGCAACCTTTAAATCCTATTCCATAAGAAACA AAATAAAAACAACCATTGTGATCTTTGCAAGAATCAATTATATATTTCTTTGGTGGTTTTCATCAAGTGTTGCTTGAGAT TGCAATATATACATTTTCAGGTAGTGAACCATGGCATCAAAACAGAACTGATGCAGAGAATGAAGGAATTAACTGCTGAG TTTTTTGGACTTCCAGTAGAAGAGAAGAACAAGTATGCAATGCCTCCAGACGATATACAAGGTTATGGACATACTTCTGT AGTTTCTGATGAGCAGATACTTGACTGGTGTGATCAACTGATTTTCCTGGTTTACCCCACCAAGTTCAGGAAGCTTCAAT TTTGGCCAGAAACCCCAGAGGGATTCAAGTAGGTGTTGCTAACAATTTAAAACTAGTATAGACCAAAATTTTTGCATTCC CTAAAAATCTAACATGGATCATCTGCAGCCATATTCTTTACCGCTCTCTTCTTCAAATTCTTAGTTGTTGATACTATATT AAATGGTTCAGATTCATTTATAAAAGTTAAATTGGTCAAGACTTTCAGACACTTGATCATTTTGCTTATGCAGAGGCTGC ATGAAGCTGATGATCCGAATTCCTAAAATCTCATTCTATAGTTAAGAGAGAAAGCTCACTCTACCCTTTATATCAAAGAA AAAAGTGAGTGTAGTGTAAAACTTTGAGGGTTTGAAATCATTAATATTCTAAAAAGCGTTAATAATATAATATTAAACTC TTCAAGTGTGTTCTCCCAATATTATAAGTTTTTGGATAATTAATTCATCATATGGTATTAGAACCTCTATGTGTAAATTT CGATCCTTGTTGTCTCTATTATTCTAATAAGAAAAGTTGAGTTTCAACACAAAATAGTGGACTTATGCATTGTGCAAGCT TCAAATTTAATTGGCTCTCGTGTGAGGGCGGGTTAAAACTACAACTATAATTTGTTGATGAAATTCATCTACTAATGCAG GGACATGATAGAGGCATACTCAAGTGAAATTAAACGAGTTGGTGAAGAACTTATCAGTTCTTTGTCTGTGATTTTGGGGT TGCAGAAAGATGAACTTCTTGGACTACACAATGAAGTACTACAAGGCTTACGTGTCAACTATTACCCTCCATGCAGCACA CCTGAGCAAGTATGGGGGTTGAGTCCACACTCTGATGCAAGCACCATTTCCGTGGTTATGCAAGATGATGATGTATCTGG GTTAGAAATTCGATACAAAGGAAGCTGGGTACCAGTGACTCCAGTACCAGATGCTCTAGTGATCAATGTTGGAGATGCAA TAGAGGTACTTGAATTATTTCTTGAGTGCACACGAGTAATGTTATATCCTCTTACAATTACAAATCATCCTTTATACTAA ATGGTGAAACAATTAAGTACTTTTTAACACTTTTAAAATACCAAATGCTTTAACTTTTCTTTTAAAGTGACATATATAAA GGAAACGGTAAGATAAAGTCACTTATTTGTAAACATTTTTTCACTTTCTTCATGTTGCAATGGTAGCAGATATGGAGTAA TGGCAGATACAAGAGTATAGAACACAGAGCATTGACAAATCAGAACAAAAAAAGGACTTCTCATGTATCATTTTTGTTCC CACGGGATGATGCGGATATTGGACCCTTTGATCATATGATAGATGCTGAAAACCCCAGGCTGTACCAGACACTCAAGTAT GGAGATTATTTGAGGCACACACTGAATAGGAAATTGGAGGGAAAAACACAAACTGATGCGGCAAAGATAAAGGAATAGAG GAATTACAAATTTAAGAGAAGGCCCAATGAGATAAATTGATTGGAGAATGTTAGTTTAAACTTTAAAGTGAACCCTCTCG TATTGCTTCTTTTTTCATGTTGTCAACTGTGCTGTATAAAGGGTATGCAGCTCTTGCATTAAAGCTCCTGCTATGTGCAG AGTTCGAAAAAACACTCAATCACTTGGTCTATTATATGCAATCTATCCTATTTTTTTATGTAAAAGACTGTTTTTAAACT TGAACCTGTGACATCAATCACATTGTCAAACGTGCTTGTATAATACTTAGTAAATAATTTATACACTAGTTGAGTAGAGT CTCTACTATGTGTTAGTGCTAGCCCATGTCATTGTAATATTTTTGTCAAGTAGTTCTGGGAAAAAAATTCAGTACTAGTC TTCGATCCTCCTTGCAATCATATCATGCCACCTACTCATGTATGGTTAGTTGTTCCTATTTTTCTAAAATTCTTACCAAT TAAGTTTGTAGATTGACAAGTATTAATGATCATCCAGCATCTTCTAATACCTCCCTTAAACTTGGGTTCATCATTTCAAG CATTTTCTTCAACTTTATACCGGTCAACTTCTTCTTCTCATTATAGATTTTGGCTTAATTTCAGTTTTGGTTCCTAAAAT AACACAATTATGCAACGTTCGTACTTCTGTCTAATATCTAATGTCGTCATCCTACGTGGCACTTCTATTCACAC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0608900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTCCCAGTCAAGTTGATGAATCTGTAACTATGACAGAGGAAGCTCCCACTTTTGCTCCATGTTTACCAGTACCCAA TGTTCAAGAAATGGTGAGGAAGAATCCTTTGCAGGTTCCTAAAAGATATGAAAGGAGTGAAGAAGAGATGGAGAAAGAAA ACTACAAGTCTCACCTTTCATCTGAGATCCCTATAATTGATTTTTCACTACTCTCTGATGGTAGCAAAGAGGAGTTATTG AAACTGGACACAGCATTGAAGGAGTGGGGTTTCTTTCAGGTAGTGAACCATGGCATCAAAACAGAACTGATGCAGAGAAT GAAGGAATTAACTGCTGAGTTTTTTGGACTTCCAGTAGAAGAGAAGAACAAGTATGCAATGCCTCCAGACGATATACAAG GTTATGGACATACTTCTGTAGTTTCTGATGAGCAGATACTTGACTGGTGTGATCAACTGATTTTCCTGGTTTACCCCACC AAGTTCAGGAAGCTTCAATTTTGGCCAGAAACCCCAGAGGGATTCAAGGACATGATAGAGGCATACTCAAGTGAAATTAA ACGAGTTGGTGAAGAACTTATCAGTTCTTTGTCTGTGATTTTGGGGTTGCAGAAAGATGAACTTCTTGGACTACACAATG AAGTACTACAAGGCTTACGTGTCAACTATTACCCTCCATGCAGCACACCTGAGCAAGTATGGGGGTTGAGTCCACACTCT GATGCAAGCACCATTTCCGTGGTTATGCAAGATGATGATGTATCTGGGTTAGAAATTCGATACAAAGGAAGCTGGGTACC AGTGACTCCAGTACCAGATGCTCTAGTGATCAATGTTGGAGATGCAATAGAGATATGGAGTAATGGCAGATACAAGAGTA TAGAACACAGAGCATTGACAAATCAGAACAAAAAAAGGACTTCTCATGTATCATTTTTGTTCCCACGGGATGATGCGGAT ATTGGACCCTTTGATCATATGATAGATGCTGAAAACCCCAGGCTGTACCAGACACTCAAGTATGGAGATTATTTGAGGCA CACACTGAATAGGAAATTGGAGGGAAAAACACAAACTGATGCGGCAAAGATAAAGGAATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0608900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSPSQVDESVTMTEEAPTFAPCLPVPNVQEMVRKNPLQVPKRYERSEEEMEKENYKSHLSSEIPIIDFSLLSDGSKEELL KLDTALKEWGFFQVVNHGIKTELMQRMKELTAEFFGLPVEEKNKYAMPPDDIQGYGHTSVVSDEQILDWCDQLIFLVYPT KFRKLQFWPETPEGFKDMIEAYSSEIKRVGEELISSLSVILGLQKDELLGLHNEVLQGLRVNYYPPCSTPEQVWGLSPHS DASTISVVMQDDDVSGLEIRYKGSWVPVTPVPDALVINVGDAIEIWSNGRYKSIEHRALTNQNKKRTSHVSFLFPRDDAD IGPFDHMIDAENPRLYQTLKYGDYLRHTLNRKLEGKTQTDAAKIKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 - –
Gene3D
G3DSA:2.60.120.330
23 356 334 1.1E-105
IPR027443
SUPERFAMILY
SSF51197
24 356 333 1.1E-101 –
PANTHER
PTHR10209:SF565
34 358 325 2.1E-133 –
PANTHER
PTHR10209
34 358 325 2.1E-133 –
Pfam
PF14226
63 170 108 3.3E-27
IPR026992
PRINTS
PR00682
82 99 18 7.4E-5 –
ProSiteProfiles
PS51471
211 315 105 13.8
IPR005123
Pfam
PF03171
219 315 97 1.6E-26
IPR005123
PRINTS
PR00682
340 358 19 7.4E-5 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0608900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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