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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0610300 |
| Transcript ID | LotjaGi1g1v0610300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oleosin; TAIR: AT3G01570.1 Oleosin family protein; Swiss-Prot: sp|P29531|OLEO2_SOYBN P24 oleosin isoform B; TrEMBL-Plants: tr|I3S950|I3S950_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0610300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115453622..115455016) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACGCCACCACACCAAACCAAAGTTTCATTTCAATGCTCCTCCTACACCATTTACTATGTGAATCACCTTCTTTTCT TATTAATTAACCAAGGCCATGCTGAAACCTGTTCCCCATGCAAACCACCAACTCACCATGTAACACGTACGTGTCATCAC GAAACAACACCACTTTTCTATAAAACACCATCCCCTCACCAACACCCTCACTCACACACACAACCACCATAAATCTCTCA CTAGCTAGTTCTCTGTTGTTTTAGTTTAATCTTTTCTTTGCAAGTATAGGAAAAAGAAAGAATAAAAATCCACCTGTTCC AAACATGAGTACTGATCGCTCAACACTCACTGATCGTTCAACAACACCACACCAGATCCAAGTCCACACAACAACACACC GCTATGAAACTGGTGTTAACCCCCAACAGCGTTATGAAACCGGTGTTAACTACCCCCAACACCGCTATGAGGAAGGTGAG AAAGGTCCATCAACCTCCCAGGTTGTTGCTGTGGCCGCCGGCCTGCCGGTCGGAGGCATCTTGCTTACGCTGGCTGGACT TACCTTGGCAGGAACCCTGACCGGGCTGGCAGTGACCACCCCGCTTTTCATCCTGTTCAGCCCGGTTCTGGTTCCGGCCA CCATTGTCATCGGTCTTGCTGTGGCCGGATTTCTGACATCCGGAGCCTGCGGGCTGACTGCACTGTCATCATTCTCCTGG GTCATGAATTACATCCGGCAGAGCCAAGGGACTGGGCCAGGCCAGCTTGAGTCCGCGAAGCGGCGCATGGCGGACGTTGC AGGCTACGTGGGGCAGAAGACAAAGGAGGTGGGGCAGAAGACCAAGGAAGTTGGGCAAGATATACAGGCAAAGGCTCAGG ACGCTAAGGCTGACACTAAGGCTCATGACACTAAGATCAGAACAACAACAACAACATGAAGAGAAGAATGAATGGGTTGT TTTAAGTGTTATGGGGTTTGTGTGTAAAAATAAATGATGTGTCTCGGGGCTTGCACTTCTCATTTGTGTCTTCTGGTCTG GTCTTGTAGCATGGTATGGTATGTGTGCTTGTTGTTATAAGTACTTAAGTAGAGGAGACTTTGGTTCATGTCTCATAAAA TGGGTGCTAGCTAGCTATCACTCTTTATGTAAATTTTCTTTTTCTTATGAATGTGTTCTGCATCTGTTTCACTTACATCC TTGAACTCAATGTGTAAAGGTGTTGTTGTTAAACGTTGGTTTAAGTCATTGCTTTCTTTTTAGTCCAGGGTTCAAAATTT CATATCACAAACTCTGAGAAGGGGAAATTTTAAAAGAGAACAAATTTTCTAAGCATACACAGCCAACCAATCAGACCTGA AATCTGGGTCAGATTGATTTACTGTGTAAAATTTG
CDS sequence (LotjaGi1g1v0610300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTACTGATCGCTCAACACTCACTGATCGTTCAACAACACCACACCAGATCCAAGTCCACACAACAACACACCGCTA TGAAACTGGTGTTAACCCCCAACAGCGTTATGAAACCGGTGTTAACTACCCCCAACACCGCTATGAGGAAGGTGAGAAAG GTCCATCAACCTCCCAGGTTGTTGCTGTGGCCGCCGGCCTGCCGGTCGGAGGCATCTTGCTTACGCTGGCTGGACTTACC TTGGCAGGAACCCTGACCGGGCTGGCAGTGACCACCCCGCTTTTCATCCTGTTCAGCCCGGTTCTGGTTCCGGCCACCAT TGTCATCGGTCTTGCTGTGGCCGGATTTCTGACATCCGGAGCCTGCGGGCTGACTGCACTGTCATCATTCTCCTGGGTCA TGAATTACATCCGGCAGAGCCAAGGGACTGGGCCAGGCCAGCTTGAGTCCGCGAAGCGGCGCATGGCGGACGTTGCAGGC TACGTGGGGCAGAAGACAAAGGAGGTGGGGCAGAAGACCAAGGAAGTTGGGCAAGATATACAGGCAAAGGCTCAGGACGC TAAGGCTGACACTAAGGCTCATGACACTAAGATCAGAACAACAACAACAACATGA
Protein sequence (LotjaGi1g1v0610300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTDRSTLTDRSTTPHQIQVHTTTHRYETGVNPQQRYETGVNYPQHRYEEGEKGPSTSQVVAVAAGLPVGGILLTLAGLT LAGTLTGLAVTTPLFILFSPVLVPATIVIGLAVAGFLTSGACGLTALSSFSWVMNYIRQSQGTGPGQLESAKRRMADVAG YVGQKTKEVGQKTKEVGQDIQAKAQDAKADTKAHDTKIRTTTTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 59 | 59 | - | – | |
| PANTHER | 13 | 188 | 176 | 8.2E-68 | – | |
| PANTHER | 13 | 188 | 176 | 8.2E-68 | ||
| Pfam | 58 | 170 | 113 | 4.2E-45 | ||
| Phobius | 60 | 82 | 23 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 83 | 93 | 11 | - | – | |
| Phobius | 94 | 117 | 24 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 118 | 204 | 87 | - | – | |
| MobiDBLite | 180 | 204 | 25 | - | – | |
| MobiDBLite | 180 | 197 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Monolayer-surrounded lipid storage body | A subcellular organelle of plant cells surrounded by 'half-unit' or a monolayer membrane instead of the more usual bilayer. The storage body has a droplet of triglyceride surrounded by a monolayer of phospholipids, interacting with the triglycerides and the hydrophilic head groups facing the cytosol, and containing major protein components called oleosins. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0610300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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