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LotjaGi1g1v0611900.1

Overview

Field Value
Gene ID LotjaGi1g1v0611900
Transcript ID LotjaGi1g1v0611900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; TAIR: AT5G14480.1 beta-1,4-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q02527|MGAT3_RAT Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; TrEMBL-Plants: tr|A0A072U8D1|A0A072U8D1_MEDTR Beta-1,4-N-acetylglucosaminyltransferase-like protein; Found in the gene: LotjaGi1g1v0611900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:115725467..115729129) extracted from Lotus japonicus Gifu genome v1.2.

TATCCCTCCTCCTCCTTCACCATCCTCCAATATTTAGAAGAGAGGGGTGGGTATGTGGTGAAAGAGCGAAAAACCACACC AAACGGCTATAATTGACGTTACAAGCAACCCTGTAGAGAGAGAGAACCTCAAAGATCGTAGCTTTACTGGGTTTTGTTGT TGTGTTGATACAGTACAACTCATAACCCCAATTCTACCCCCTTTTCTCTCTTCAATTCTATCTATCTATCTTACTGTTTT TCCCAACCAAACAAAACAAAACAAAAACAACAAGTTTCCTTTTTTTTTTTGTTTTTGTTTTTGTGGGTTGTTGTTCTTCA TCACCATGTCTGAAGGCTATTACAATTCCAAGAAGACTGATGATATCTGCGATGATGTTTGTGGACAGGTACTTTTTTTT TCCAATTTTTTGCCTTTTTTTTTGTTTAATTCCCTTCTACTGTACTGAAAAATTTGCCCCTTTATTTTGGTTATGGGTTT TGTGAGTTTCTGTGGTTGGGTTTTGTTGTCAATGCAAAATGGGGTGTTGAGTTTTGTTGAAATTTTTAATCCCTTGTTTT TTTTCTTCTTTTGATATGCATAAAGTTTTCTCCTTTTTGTAATTTGATTGAACTTTGTTCATCTTTTTCCTAACCTAATT GAATTTTGAATGGAATTTCAGAAGAATATCCCCTTTCAGTTTGTGGGCATTAGAGATGTCAAATATGATTAATTTGTGAA TTTGTTGTTTTGATTGATCGGCCATTGTTTCAATCGTTTGAGTTCATAATTTCTCCATGGTTTTTCTGGTTTTTGGACTC TAGGTTTTCTATATGGCATTTGAATTGTGGGTTTCAACTCTGAATGTTTGATTGTTTCACCCTTGTTTTGCTTTCTGAAC CTTGTATAATCTTTGCAGAATGGTGGTTGTTTCAGTTTTTTTTTTTGTGTCCACCATTTTGAAATCCCATTTTCCTTGTT TCCCCCAATTTGTATTTTTATTTGAGCATTGTGAAAATAATGGCAGGGTGTGTATTTTTTTAAACTGCCTTCATTGCATT TATCATTTAATTTCATTGCAAGTGTTCAATACATGCAATGAGTGCAGTGCAGGTGGTGTTTAAAAGTGATTGTATGAGCT CCTAGGTCGAAAGTTCGATACTAGGAGCCACGTTCTTAGCCTTCATGACTCCCGGGTTGGAATTGTGAAAGCGATTCCCC TGATTTACATGTAGGTAGAGTTGGTGTGTTGGTAATTTTATGTGCAGGAAAGCATGTTGAGGTTTTTGAACATGAAGTTA TTCCATGTGTCTTAGAGACTTTTTGTTTTCTATGCAGCAGGGCACCCCCGCAGCACTCAGCATGTCAAGACTCAGGTGTG TTTTACGGGGATTGGACTTCAAGACTTATTTATTCCTATTCGTGGTTGTCCCGGTATGCACATTCGTTGTCTATTTGCAC GGCCAGAAAATCTCATACTTCCTAAGACCACTGTGGGAATCTCCTCCAAAGGCATTCCATGAAATCCCTCACTATTATCA TGAGAATGTGTCGATGGAGACTCTCTGCAAGCTTCACGGGTGGGGGATTCGTGAATCGCCGAGACGCGTCTTCGATGCTG TTTTGTTCAGCAATGAAGTCGACATGCTTACTATCCGCTGGAACGAGATGCGTCCTTATGTGAATCAGTATGTACTCCTT GAATCAAACTCAACATTTACAGGATTCGTCAAGCCATTGATTTTTGCAAGCAACAGGGACAAGTTCAAGTTTGTCGAGCC CCGACTGACCTACGGGACGATTGGAGGGAGATTTAGGAGAAAGGACAACCCTTTCATTGAGGAGGCATATCAAAGAGTCG CCCTGGATCGGCTTCTGAGAATAGCAGGCATTGAAGATGATGATCTCTTGATAATGTCTGATGTTGATGAGATCCCTAGT GCTCACACAATCAATCTATTGAGGTGGTGTGATGATATCCCTCCAATTCTTCATCTTCAACTGAGGAACTACTTATACTC TTTCGAGTTCTTTCTTGACAACAAGAGTTGGAGAGCATCAATTCATAGATATCAATCTGGCAAGACTCGGTACGCACACT ACAAGCAGGGTGATCTACTGTTGTCGGATTCCGGCTGGCACTGTAGCTTCTGTTTCCGCCACATCAGTGAATTCATATTC AAGATGAAAGCTTACAGCCACTACGATCGGGTGCGGTTCCCGCATTACCTGAACCCGGACCGGATACAAGATGTTATATG CAAAGGGTCTGACTTATTTGACATGCTTCCGGAAGAGTATACATTTAGGGAGATCATTGGGAAATTAGGACCTATTCCTC ATTCTTATTCAGCAGTGCATCTTCCAGCTTATTTGTTGAACAATGCTGATAGATACAAGTTCTTGTTGCCTGGTAACTGC AGAAGAGAAAGTGGCTGACTTTGAATGTAGCTGTTTGGTAAGTGACATTGTATATTGCATCAGAAGGAGCTCTATGGAAT GATTTATAGGTCATTCTCAGGAGTCAGTATTCAGAGAAGACTGATAAAAGGTTTTGACATTTGACAGGAACCTCTGTAAA TCCAATTTCAAATACTCTGGGGTTTTTAACCCTGCATGATTGAGGCATGTGAGTTTCTCAAGTGAGGAGTGTGAGGGAAA AATAGTGGTTTTATTTATGGCCTTTGGGCAAGGTTTTTGTATCTTCTCATGGGGTTTGCATGAACCCCTAACTTGCCTAA TGGTAGCATGACATTTCCCAAGCTCTTCTTCTAGCGAGAATTTGAATTTCATGGATTTAAGTTATACATGTATTCTAACC ATTTTGGATGGTCACTGATTCAGGTTTAATTTAATTTCCTTCTGAACCCCTGTTTGATCAGTGTTGAATTTACATCACTG TTCAAAGTTCACTGATCCTTTGATTATGTTCTGCAATTGAATTTGGTTCCAATTGAGTGATGCATTTTAAAGGATAACTG AGAATATAATTACTATGAATCACAAATTATGAAATTATAGCCGACATCACTCGGTGGGATAAGTGGGGTAAGACTTTTGT TGTTCTTGAATTGTTTAATCTTATTTCTATAATTTCACATTCTATCCCATTCGGTATGCCTTTTCCAAGTCATCATGTGG CTTGGTGAGCTAACTCACTTTGTGAGAGTTTTTCTCCATTTATAAAACTCGAATTTGAATCATTGTTTATGAAAAATTAG GTCTGTACTTTTTGAATCAACCAATAGTCCGTGAATTTGTATAATATTCTGCACCAATATTAAATGTTGTTTTACTAAGG TTAATTTTTTTTTTTTCTTTGTATTGCAAGTGGAGTCTTGTGTTGACTTGGGAAGTTACAACTGGTTGGGGTTTCCTACA TGGAAATTGACATGTTCTTTCAGAAGACTAGGAATAAACTACCTTTTCAGCAACAGGAAAGTGCCTTGAGTAACCTTTTT CGTTGAGAACTAATGAGAGAGTCCCTACCACCACCCTAGTGTCAAGAGCACGTCCTACAATTAATATTCCCATTTACTAG TTTATTTCTTCTATGCTTATGTTCATTCTTGCTTGGACCTTAATGAAGAACATTCTTGTTAAGCCATAAAAAATAGTGAA GGTTTTAGTTTTGTTGGACAAAGATGCTCTGACACCTCTAAATGGGGTTGAAGGAAGAGAGAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0611900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTGAAGGCTATTACAATTCCAAGAAGACTGATGATATCTGCGATGATGTTTGTGGACAGCAGGGCACCCCCGCAGC ACTCAGCATGTCAAGACTCAGGTGTGTTTTACGGGGATTGGACTTCAAGACTTATTTATTCCTATTCGTGGTTGTCCCGG TATGCACATTCGTTGTCTATTTGCACGGCCAGAAAATCTCATACTTCCTAAGACCACTGTGGGAATCTCCTCCAAAGGCA TTCCATGAAATCCCTCACTATTATCATGAGAATGTGTCGATGGAGACTCTCTGCAAGCTTCACGGGTGGGGGATTCGTGA ATCGCCGAGACGCGTCTTCGATGCTGTTTTGTTCAGCAATGAAGTCGACATGCTTACTATCCGCTGGAACGAGATGCGTC CTTATGTGAATCAGTATGTACTCCTTGAATCAAACTCAACATTTACAGGATTCGTCAAGCCATTGATTTTTGCAAGCAAC AGGGACAAGTTCAAGTTTGTCGAGCCCCGACTGACCTACGGGACGATTGGAGGGAGATTTAGGAGAAAGGACAACCCTTT CATTGAGGAGGCATATCAAAGAGTCGCCCTGGATCGGCTTCTGAGAATAGCAGGCATTGAAGATGATGATCTCTTGATAA TGTCTGATGTTGATGAGATCCCTAGTGCTCACACAATCAATCTATTGAGGTGGTGTGATGATATCCCTCCAATTCTTCAT CTTCAACTGAGGAACTACTTATACTCTTTCGAGTTCTTTCTTGACAACAAGAGTTGGAGAGCATCAATTCATAGATATCA ATCTGGCAAGACTCGGTACGCACACTACAAGCAGGGTGATCTACTGTTGTCGGATTCCGGCTGGCACTGTAGCTTCTGTT TCCGCCACATCAGTGAATTCATATTCAAGATGAAAGCTTACAGCCACTACGATCGGGTGCGGTTCCCGCATTACCTGAAC CCGGACCGGATACAAGATGTTATATGCAAAGGGTCTGACTTATTTGACATGCTTCCGGAAGAGTATACATTTAGGGAGAT CATTGGGAAATTAGGACCTATTCCTCATTCTTATTCAGCAGTGCATCTTCCAGCTTATTTGTTGAACAATGCTGATAGAT ACAAGTTCTTGTTGCCTGGTAACTGCAGAAGAGAAAGTGGCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0611900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSEGYYNSKKTDDICDDVCGQQGTPAALSMSRLRCVLRGLDFKTYLFLFVVVPVCTFVVYLHGQKISYFLRPLWESPPKA FHEIPHYYHENVSMETLCKLHGWGIRESPRRVFDAVLFSNEVDMLTIRWNEMRPYVNQYVLLESNSTFTGFVKPLIFASN RDKFKFVEPRLTYGTIGGRFRRKDNPFIEEAYQRVALDRLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPPILH LQLRNYLYSFEFFLDNKSWRASIHRYQSGKTRYAHYKQGDLLLSDSGWHCSFCFRHISEFIFKMKAYSHYDRVRFPHYLN PDRIQDVICKGSDLFDMLPEEYTFREIIGKLGPIPHSYSAVHLPAYLLNNADRYKFLLPGNCRRESG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 41 41 - –
PANTHER
PTHR12224:SF11
1 387 387 2.5E-245 –
PANTHER
PTHR12224
1 387 387 2.5E-245
IPR006813
Pfam
PF04724
40 385 346 9.5E-180
IPR006813
Phobius
TRANSMEMBRANE
42 61 20 - –
TMHMM
TMhelix
44 63 20 - –
Phobius
CYTOPLASMIC_DOMAIN
62 387 326 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003830
Molecular function Beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R.
Subterm of
GO:0006487
Biological process Protein N-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0611900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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