Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0612100.1

Overview

Field Value
Gene ID LotjaGi1g1v0612100
Transcript ID LotjaGi1g1v0612100.1
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein,; TAIR: AT5G14490.3 NAC domain containing protein 85; Swiss-Prot: sp|Q6NQK2|NAC8_ARATH SUPPRESSOR OF GAMMA RESPONSE 1; TrEMBL-Plants: tr|A0A1J7HMS1|A0A1J7HMS1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0612100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:115738654..115743713) extracted from Lotus japonicus Gifu genome v1.2.

TGACAATCACTCGGTTTTCGAAGCACGACATACTATTCCACTAGGCTCGGAGTCAAGTTCGGTCAACTATGGGTCCACCC GAACCTCAGCCTCGTCCAATCGTTCAATACAGAAGCACAGGTTCGGAAACGTATGCACTTCCATTCCAATTCCAACATAC ACACTCATAGTGGAACTTCCCGCTCATTCACACACACTCTCGCTTTCATTGTTCTGCTTCTCTCTTCTTACCCTTCTTCA ATTCAATGGCTAGGTGAGCTTTCAACACTGTAAAGTTTCCATTTTTGGTTTTCAAAGCTCTTCACTTTCTGAATAGCCCC TTTTTTTAATTGTGGGTTGTTCTTGTTGTAAATGTAGCTTTTTTCTGTTTTTGATTCCTGGGGTGGGGTTTTGGGTTTTC AGTTGTAGGGTGTGACATGGCTTTTCTTTTTTCCTTTCCATTTTGGTGCTGGTGATGACTTAAGATGGATATGGACTGTT TGTTTTGGCTTTTTTCTATGTTTGGAATGATAGATTGTGGGTATTGTGGCACCTACCATTTTTGGGGGTTTGTTGTTTTT GTGTATTAGGAAAGCTAGAAATTGGAGAGACACATGTGGAAATAGGCTGAGTAGGGTTCGGGGGTTTTGACCCGTCTGAC AAAGTTTATTTTAGCTTATCTTATAGCGTAAACACTTATGTATGTTCGAGAGAGCCTAGGTAAATAGTTTACAACCTGCT TGAAAGCTATTTTGAACTTATTTTCACAAGTTGTTCAGATTAATTTATGAATATGTGTTTATGTTTACCTGTAATCTATT GTGAGTCTATTTCAATAAACTTTGCAAATTGGATTATGAATAAGCACTTATGAAATACACACCCTATATATACCATGAAC CACAAACTAATGCAAAGCTAAAAGAAGAGGTTACGGTAATGAGATAAGTTGTTAAGGATACATTGAGATGAGAGGAGGTG CTGAGGAGGAAAAATATTCACTCTGAAAGTCTGAAGCTACTAGGCATTACAAGTTCTTAACCTAGCACTTCGTTTATGGA ATAATGAACTTATAGAATATTTGTTGATTTTGTTCTACAGGAGTTGGCTTATTGACATAGGAGGATTTGCAAAGAAAGTA AAAAGCACTGCTTTATCTTCATCTGAACAGATCAAGGATTGCGGGGCATATCGCGAATGCCCGAACTGTAGTTATCATAT AGATAATAGTGATGTATGTTGGAATTCAGCATTGCATTCATTTTCAGTTCTTAATAGCTTACTCAAACTCACACATGCAC TGAAAACAGAAAAAGTTAGAGCAGAGTCCACTGTCCTTTTCCCTGCATTTGCTGCTTTTGGCATGCACAACTGATTCAAG TATTTAGTGTGTTCATGGAAAAGTTTGCAAACTTTGAAAAGTTTAGCATGTGTTTGAATGATTGTAGAATGTAGATGTTT CATTAACAACATTTCTTTGCGTCTGTAGGTTTCTATTGAGTGGCCTGGCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTG ATGCCGAACTCTTAGAACATTTAGCAGCAAAATGTGGTATTGGGAATGCAAAGCCACACATGTTTATCCAGGAGTTCATC CCAACACTGGAAGGAGATGAAGGTATTTGCTATACACATCCAGAAAATCTTCCAGGTGAGAATCCTGACCTTTTGCGGTC AAATATGTACATCTATAACACTTTCTGTTGTACTTAATTGATCAGTGTACCAACAAAAAGGCATAGAAAAGTACCACTTT GAAATGAAATTTTTTCCGTACAACTATAAAGCCTACTATGTTGTAAAGCAAACTCATTATTATATAGATGAGAATGTTAT AATGGATTACAGGATTAGTGGTCACAACACCTAATGTAGGATTAGGAGGAGTTGCGATGGCACTAAAGAGAAAGCTAGGG TAGCACATATTTTAAAGAAGATAGTAGAGTCTCGTTTAACTGGTATGGGTGTGGATGGAGAAGACCTGACAAAATAGTTA AGAAGATATAAAAAAGGGAAAAGTAGGTGCTATAGAGCTCCCATTTTGCTCGAGGTCCAGGGAGGGATTGGACCCACTTT GTGGATCTAAGGTAGGAAGCCTTACCTTGCTTTTTTGCAAGAGGCTGATTCCATGACTCGAATGTGTGATTGCAAAGTTA CATGACAGCAACCTTACTGTTGTACCGAGGCTCGCCCTCTAGTTAGGAGGATATACTAGAAGAAATTTAGTAAAATGTTT TTTTTAAACAAAATGTAGTCAAAGAGTTAGGCGTAGAGAGATCAAGATAAACTATAGGTCAAATAATGAAGAATGATTTG GATTTAAATGGACTATCATTATACATGATTTATGATAGAACATTATGACATCATTCCAACCATATAGCCTATCCCTCCTA GTGGAAAAATTATTTGGGGTTTTTGTTGTTTGACGTCAAACTTGACAAACATCTTTATTCAGCATATGATCTCTTGTGAA ATAGGTCGTGAACATGAGCCATGAATGATCTATTGATGTAATATTAGTGTGTCCTCTGGATTCTGCAGTCTGCTCATTAG CACACTGATAGTGCTTGTTTGTTAAACTGATACTTGACGCAGAACTAGGACACAAAGCAGTCCATCATCCTATCAGTCAA AATTCATCAAACCTCAAATCAGCATCTTGCAGACATGATTGGCCTTAAAAGATGTATATTTTACCCCTTTAAATCCGAAC CTAATCAAGATTCAGATGCTGTTAATCGATAGCAATCTTTAGAACAAACATCTCATGTTGTTACTCTTCTTGATGGGGAT TGAGGGAAGGAAGGTTTTTATGATTGCCAAATAAATTTATTGGCTGCTATTGCATATTATATCTCACAATTAACTTTGTA CAGGTTCTAACAATTGAATTTGTTCATTGACATCCAGCTCTAAATATCTGAATTGTGGCGTTTTTTCTGTAGGTGCTAAG AAAGATGGGAGCTATGTCCATTTCTTTAACAGAACAATTAATGCCTATACTACTGGTCAACGGAAGCGTCGAAGGATTCA TTATGATGGTCTGACTGAAGACCATGTACGCTGGCATAAGACTGGTAAGACCAAAGCTGTTGTCGAAAATGGAGTACATA AGGGCTATAAGAAAATCATGGTTCTTTATATAAGATCTAATAAAGGGTCCAAGCCCTCTAAATCCAACTGGATAATGCAT CAGTACCATCTAGGACCTGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAGCAAAAGCA GACTGACAAAAATGAGGAGAATCCAATGGCTGAAGATTCTGACATTATAACATCACGAACAAGTCCAAGGACTCCAAAAC CAAATCCCCCCAATCCACCTCGCACAGGAAAATGTGTTGACTGTGATGATAATATTGATGAAGCTGCACTGTCATTTGCC CAGGTTGGTAGCTATACATGATGCTTTGAATATGATGATTAATTTCACTTTAAGGTCGATCATTGTTGAGAAGTCCCACA TTGACTAGAGATATAGACATATAGCTGAAATAGTCTTTAAAGGTTGTAGAACATAATGAAAAAAAGGCCGTAGAACAACC CTCATCCATAAGCTTGCTCTGAGGTAGAGTCAACCCAAATTCTAAAATGGTATTAGTCTGTCATAGATCCGTTTATAGGA GGCCACCTATATATGGTCCACCACAAATGTTCATTCTCGCAGTTTCCACGCTCCAAATGTCTAGTCTTGGGCGTGAGGGG GTGTGTTGAGAAGTCCCACATTGACCAGAGATATTGTCAAAATAGTCCATATAATAAGTAGAACAACCCTTCTCCTATGC TAGTTTTTTCGGCCACAGTTAGGCCTAACCTGATTCTAAGAGTCAGCTAAACAATTCAATGGAAAAGAGAGGTCAAATCT AATGTTCTACTTGTAAACAAGCCATCATAGAAGCACTTTTGCTTGTCTTGGTTTTTTAAAGTATGTTCAAGCTCTATTGA GTAGTGAGTATAGAAGTGATGTAACAGTTTTACTAGTTATTCCTTATCTATGTTTGCATTATTTGATTCATCTCTAAAAT TTAACTTTTATGAACTAGGATGTCAAATATATCCCTGGAGGATCGCACGCCCCACTATTTGACATTCAGGATCTGGACAA TAGAGGCAATCCTGCATGGTTGGCTGGTGAATCACAGGCTCTGGAAGTTGCTGAGTTTGATGGCTTGGATGACATATTGT TGTGCAATGAGATTTTGGATTCTTCTGCTCTATTAAATGATGATTTTGGATTGGACTCCACCACTCTTAATGGCTTTTCT TCCTATGATAACATAATGGCTGGAAATGATAATGTGACTCGTGGAACTTCTGTCCTGGATACACTGGAATTGGATACTCC TCCAGATTTTGATCTTTCGGTGAGATCTGGTTACCCTTTCTCCAAATTTACGTAGAGTTTTCGGATTTACTGACATGCTC TGTGATTCTAAATTTTGCATGCAGAATTTGAACTTTGGTTCTCAAGATAGTATCCTTGGGTGGATGGACAGGTTATGAGG TGCTCTTTGAAGTAAGTTCTTTTTAATGCCATTGGCAATCCGAGAAGCGTTCCGTTCGATTGCTGGGGGGTGCACCCTTT CATTTCACATTCTTCAATTACATCTGGTTCATCATGAGATGTTGCAACTTGCAAGGAGAAATGATACTTTTGCAACTTTT GTCATATCATCAAGTTAACTAGTTAAGCCATAGCTACAGCTGCTGGAGTTTGATCTTTCTTCATTTAGGCGGCGGTATTT GTGTGAAAGTGGTTTTGATGGTGTATTTTATTTGCTGTATTGGTCTTGATGGTTATGTAAAAGCCATGGAAGTGGTAAAT AGATCTTTGGGGTAAAATCCAAAATGATGTTGTAGGTTCTAAACTATATCTATTTGACATGTGAGTGGCTGTATGTGAAT AATCTGACTTTAGATGGCATCGCATATGTTTTTTCAAAAAATTTAGTACTCCTGGAGAATGGGGTCTTCGGTACTACTTC TACTCACATTGCATCATTTC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0612100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTAGGAGTTGGCTTATTGACATAGGAGGATTTGCAAAGAAAGTAAAAAGCACTGCTTTATCTTCATCTGAACAGAT CAAGGATTGCGGGGCATATCGCGAATGCCCGAACTGTAGTTATCATATAGATAATAGTGATGTTTCTATTGAGTGGCCTG GCTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGCCGAACTCTTAGAACATTTAGCAGCAAAATGTGGTATTGGGAAT GCAAAGCCACACATGTTTATCCAGGAGTTCATCCCAACACTGGAAGGAGATGAAGGTATTTGCTATACACATCCAGAAAA TCTTCCAGGTGCTAAGAAAGATGGGAGCTATGTCCATTTCTTTAACAGAACAATTAATGCCTATACTACTGGTCAACGGA AGCGTCGAAGGATTCATTATGATGGTCTGACTGAAGACCATGTACGCTGGCATAAGACTGGTAAGACCAAAGCTGTTGTC GAAAATGGAGTACATAAGGGCTATAAGAAAATCATGGTTCTTTATATAAGATCTAATAAAGGGTCCAAGCCCTCTAAATC CAACTGGATAATGCATCAGTACCATCTAGGACCTGAAGAAGATGAGAAGGATGGTGAATATGTGGTTTCAAAAATATTTT ATCAACAGCAAAAGCAGACTGACAAAAATGAGGAGAATCCAATGGCTGAAGATTCTGACATTATAACATCACGAACAAGT CCAAGGACTCCAAAACCAAATCCCCCCAATCCACCTCGCACAGGAAAATGTGTTGACTGTGATGATAATATTGATGAAGC TGCACTGTCATTTGCCCAGGATGTCAAATATATCCCTGGAGGATCGCACGCCCCACTATTTGACATTCAGGATCTGGACA ATAGAGGCAATCCTGCATGGTTGGCTGGTGAATCACAGGCTCTGGAAGTTGCTGAGTTTGATGGCTTGGATGACATATTG TTGTGCAATGAGATTTTGGATTCTTCTGCTCTATTAAATGATGATTTTGGATTGGACTCCACCACTCTTAATGGCTTTTC TTCCTATGATAACATAATGGCTGGAAATGATAATGTGACTCGTGGAACTTCTGTCCTGGATACACTGGAATTGGATACTC CTCCAGATTTTGATCTTTCGAATTTGAACTTTGGTTCTCAAGATAGTATCCTTGGGTGGATGGACAGGTTATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0612100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARSWLIDIGGFAKKVKSTALSSSEQIKDCGAYRECPNCSYHIDNSDVSIEWPGFPVGVKFDPSDAELLEHLAAKCGIGN AKPHMFIQEFIPTLEGDEGICYTHPENLPGAKKDGSYVHFFNRTINAYTTGQRKRRRIHYDGLTEDHVRWHKTGKTKAVV ENGVHKGYKKIMVLYIRSNKGSKPSKSNWIMHQYHLGPEEDEKDGEYVVSKIFYQQQKQTDKNEENPMAEDSDIITSRTS PRTPKPNPPNPPRTGKCVDCDDNIDEAALSFAQDVKYIPGGSHAPLFDIQDLDNRGNPAWLAGESQALEVAEFDGLDDIL LCNEILDSSALLNDDFGLDSTTLNGFSSYDNIMAGNDNVTRGTSVLDTLELDTPPDFDLSNLNFGSQDSILGWMDRL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31079
1 396 396 7.8E-185 –
PANTHER
PTHR31079:SF2
1 396 396 7.8E-185 –
SUPERFAMILY
SSF101941
39 215 177 2.62E-35
IPR036093
ProSiteProfiles
PS51005
55 215 161 29.391
IPR003441
Pfam
PF02365
56 196 141 1.7E-20
IPR003441
Gene3D
G3DSA:3.30.310.150
64 221 158 2.0E-21
IPR036093
MobiDBLite
mobidb-lite
217 256 40 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0612100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…