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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0613700 |
| Transcript ID | LotjaGi1g1v0613700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|K7MSG4|K7MSG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0613700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115946252..115951404) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAAAAATTATACTTATTCAAATGATTTTACTTGTTAAATATTTAGATGGTCTTTTGTATTTTTATTTAATGTATTTT TATTTTATAATAGCCCCAGTAATATTTTGGTTTTCTATTGAAAAAATTATAAAAACTAAATTTTGCTTAACTAACTTGCG GGTAACGAACATGGGTATGAGCATATAGGTACCCAGAGGGTACAAAAACGGGTACTCAGATTAATACCCACCCAAGTATG AAGACGTGTACGAGCATTGCCATCCCTACATAACTTCCGAATTTCCAAATTAAAGATAGCCATCCTAGAACATTTATTCC AAAGTCAATTATGCAGTCAAAATATTTATATTTGTTTGATTCCCTAGAAGTTTTTAAACTAAAAGTCTTTCTAGACTAGT TTGTCCACCACTATGAAGAGTTTCTAGACTAGTTGGCTCAACATATGATTTTATAGGAATTTGAACTTGTATCTTCATTC TTATGAATATCTAGCTTGTTCACTAGTAGATTAACATCTATTCTATTGTTCACCACTTATTTTATGAATTGTGTTAGTTC CAAGAAGTCTTCAGTTTAGGTGGAAAAATGAATTAAACCAGGAGACATATTATTGCAGAGTCCGGTGATAACTAGACTAG TTTTAAATGAAGAATTCACAACTCAATCTCAATTCTCAATCACCATAAAATTAAAGGTTTTGAGTTTAGGAAAGTCATCA CTTCGAACTAAAGCTCTTGCCATTGTTCATGATTCAACCCATGGCTGGAAAATTTCCTCACCAGCCTCAGCTGAAGAAGC CAACTCACTTTTTCAAGATCATAAGTAGTCACAGCCTTCATGAAGGAAAGCTAGTAAGTAAACATTCTCTCTTTGACACT TCCATAAACAAAAACAAAAAAAGAAGAGTAATTTCAAACTCAGATATATTTAACAATATAAAATTGATAGATGTTGCTTA AACTATAAGTATTTTTCTGAGCTTGATCATGCATATTACTGTGGTAGCAGATGATCCCAAGAGCGTTTGTGGAGAAATAT GAAGAAGGCTTACCAAAAACTATGTTTCTTAAGCCTCCAAATGGTAAAGATTGGAAATTAAATTTGGTGAAACTTGATGG TAACATGTGGTTTCAAAAGGGTTGGAAAGAATTTGCAGAGCATCATTCTCTAGCTCATGGACATCTTCTGGTTTTCAAAT ACCAGAGAACTTCCCATTTTCAAGTACAAATCTTTGACATGAGTGCCTTAGAGATAAACTACAATTTCAAAAGAGTAGAA GGTAAAAGGGCCTCTAATAGTGAAGGAAATAAACCTCCAAATGATGAAAGTTCAGAAGATTACAGAGCAGGTCAAAAGAG AAAAGCTAACTTGGCATTTGATTTTTTTCAACCATGTAAATTAGAAACTGGGAGAGATGATAAAGTTCGAAATGACTTGA AATTTCAAAAGGTGGCTTTGGATCACACGAACAAAAAGTGCAAAGGTATGAAATTTAATCTGCTTTCCAACATCTCATTA TGCTTCACAAGTTAATATTTGGGTTCTTTGCTTTCTATTTTCATTTTCAATTTTAATTACAAATCTTTTACATAATTTTC ACTTTGTTTATTATTTTCAAATTTTAGCTTTAAAGTAAAGAAAAAAGTTGGTTCACACTGTTAATACACTTGTCAGAAAG GAAAATAACATCTTTATACTTCTCCACCTCCCCCTAATGGAAAAAGATAAGAAAAGAAGAGAGAAGATTGACAGATATGA TAAGTGACGTGATAAGAAAAAATGTGAGAGATAGGAAGAAAAAACAGGTGAAAATGAGATGGAATAAACATATAATTTTT TATCAAAAAAAACATGATTATAATAGAAACATATTTTAGATATGATCGGTTATATGATAAGAAAAAAAATAGAGAAATGT GAAGAGAAAGTGGGTGGAAAGATGATGAAAAAGGAATTAAGGTATAATCAACATCTAAAAAAGTGGTGAAAGTAATAAAA TGTATTTTCATCATTTCCTAGACAGAAAACAAAATGAAAACGGGAAATGATGAAAATTTTTGTGGAATACATCTAAAGTG ACTCTCTTGCAGTAGGTTTCAAATTGTAAAAGCCTGAAACTGAAAGATTATCATGTTTATGCGTGGCTTACAAAGTCTTA ATTTTCAGGAAAACAAATTCTTACTGCTAAGCAAGCTACAGCTCTCGACAGAGCAAATTCTTTCAAAACTTGTAAACCAT TCTTCATGGCTTTCATGCACCCGTCATATTTCTATTGTAATCTGGTAAGCTGCAAAGAAATACTTGGCTTGTAAAACCCC AGTTGACAAATACAATATTTAGTGTATAGTTGTTAGTTTTATAGGTTGCAGTTTTCAATAAATGCTTTTTTTCCCACTTA TTCTTGAGCCAATATGTTTAGGATACTCGGTGACAGATTAACATCTCTCATGAAAATATCGAGTGAAACTTTGTGTCTAT TTCTCTATTATTAATTATTCATAGAATCTCACCTATTTAATATTTATGAAGAGAGAAATAAACATAAAATTTCAACATAA TAGTGTCATGTGGGTCAAGGAATTCTCAAATTCACAGAGTCAAAGATTCTGATCGAATCGTTTGATCATGACAAACTACT CAAATTTTAAGCATATTCCTGTTTTCTAATCTTGATGAAATATACGAGTTGATTGATCTTTGATCGAACAGTTCAAATTC TTAGACTGCATGTGAATGTAGGCTTTCCATAACTGACAGGGAACCCAAATCCATTCAATCCCTCATTAACATTTTTCTTT TCCATTCCTTGGCAGAGTATACCAGCCAAGTTTGGAAAGAAACACTTAGATTTGGGCCAGAACGTGGGTGATATCCAACT TAGGGTGTTAAATGGGAGATTTTGGCCTGCAAGGTACATAATCAGGGAAAACGGTGAAAGAAAAAGATTTGATCTCTCAT ATTCAGGATGGAAGGCATTTTCTAAGGACAATAAGTTGAAAGTAGGTGATGTTTGTGTCTTTGAGCTCATTCATGGGACT AAACTTACCTTTCTGGTTCACATCTTTCGAGAGTCAGAAAATTCAAATTGTCCAACATCTCAAGGTAGGATTGATGATAT TTAACTTTCTTTTCATATAATTCCTCATGTGCCATATCTCATTTTCTATCTCTCCAGTGGAATTCTAACATGTCAATTAG AAAGTATATAAGTATGACAGATATAAACTTACATGAGTGGTTATTATTTGACAGTAGAATTTCATTGGAGATACAAAATG AGACACTACTTTGAGGTCATGAAATAACTATGTTCTTCTATCTTGTGCAGAATACTCAAATAAAGCATCTATTGTATTCA AGGACAGGGAAAGGAAATGAAAATCATCACTACCACCAAATAGTTTCAATTCTATTGTATGAAGCATAACTTCGGATCCA GTGAGTGTTTCTGGAATACTGCTAACAATTGAAAATACTATATAAGAGTAACCAAGAAACAGTTTTACTATTCAAATTGA TATTTGGTACTTGTGTAGATTAACTGATGACATTTTCTTTTGAATAAATTATTAACTTTCCTTATCATTCTGCTACCAAT ATGATATTCTAATACTCTCTAAATAAAACCTCATTCATAAATCAAATAAACTTCTAAAGTCAGTTATTCTAAACATTCTA TATTTATATTAAATAGTAAATGGAAAGCCCTCATACTCAACATTTTCTGCCCTGCTAAGTGCTAACAGCAAATCATCATT GCTGGACTTTATGCAAAAACACTTCAATCATTGGCCTCGTACTATCAACTACCCTTTCAAGCTTCATCTGAGATACTGAT GCGCTTTCTTTTCTTGGATAACTTAGTAGCATTCTGAAATTCATTACTTTCACTAAATTGAGCAGCGGTTCGAGCCCGCA GTTCATCCAAACTCTCACCTTCTTTCGCTCTCTCTATCACCTGAAAATAATAAGCACCATTAGTTCTCATGTACTTGCAA TTGTAACAGACCTTCTCGATGGCATCCTTAGAAGGGGGATAAGGGGACATTGTAGAGGATACAATAAATCAAATTCTTGA AATGCATATTTTAGTTTCACTTACCAGAAGCTTACCATTCAGGTGGGTTCCTGAAAGTGTTACAAGAGCATTTTGAGCCT CCTGCTTAGTACTATACTCTACAAAACTAAAGCCTCTATGACCTCCATACTTCATGGGCAACCTTAAGCTTTTAATCTGC ACAGTTTTGAGCCATCGAAAACGAGTGAAAATAAGGCTCTGCATATTTGCATAAGAGAACTATATCTGCATATTTTGGCT GAAATGAAACCCCTCCCTCCACAACAACAAATGAAGAAAAGAAAAAAAAGCATAATGATTGGCATATGGCCTTAAATTGG ACACATATATTTATATTTAGACTTACTACACATAAAAATAAATTTAAATGATGGTGTAATGAAGAGGAGGAGTTGCAAAC TATCCAGACCGCTTTGGTAGGATATCAGTCAAATTGATTTTGATGTAAGGTCAGATGTTTTTTTAGGGTAAGATCATTGA AGAGGTGCAGGCTAAACCTTACTGTGATATGTTCCAGGTGCAATTCTGAAAATGAGAAATATTCATTGAAAATATTTTGT ATGCTCCAATGATCAACCGGCTCACATCTTAACCAAATCTATTCCAGGATCAAGGGTAGCACACATACGTAGCACGAGCT TAATGCATGACATATGTGCACCAACCTGTGAGGAAGTGTTGTGTGTTGAACTTATAATGTCCAATATGATGATGTGTGAT CTAATTTTATTTGATTGTGTATATCTGTATTTTAGGAAGGTTTACTGTATTAAAGGATATCAAGGTCCTATCTCTGAGGC TTAGGATGATCATTTCCTTCTTTACCATTGTACCTTGTATCTATAAATATGTATACCTGAAACCATGGTCCTTGAGGCAT GAATCAATAAACTATTCAGTTTCTCTAATTACAATTGCATGGATTATGTGTTCTAGTTGTTACTTGAGGAAGCTTCTAGC AGAAGTCAACACAGGCTGTGAGTTGTGACTAAGTCCCAGCAGATTAACAGATTATAGGCTAGCTCTAACTAATGGAGGCA ACAAATATCAATTGGTAACAGTAAGCATAATAA
CDS sequence (LotjaGi1g1v0613700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAACCCATGGCTGGAAAATTTCCTCACCAGCCTCAGCTGAAGAAGCCAACTCACTTTTTCAAGATCATAAGTAG TCACAGCCTTCATGAAGGAAAGCTAATGATCCCAAGAGCGTTTGTGGAGAAATATGAAGAAGGCTTACCAAAAACTATGT TTCTTAAGCCTCCAAATGGTAAAGATTGGAAATTAAATTTGGTGAAACTTGATGGTAACATGTGGTTTCAAAAGGGTTGG AAAGAATTTGCAGAGCATCATTCTCTAGCTCATGGACATCTTCTGGTTTTCAAATACCAGAGAACTTCCCATTTTCAAGT ACAAATCTTTGACATGAGTGCCTTAGAGATAAACTACAATTTCAAAAGAGTAGAAGGTAAAAGGGCCTCTAATAGTGAAG GAAATAAACCTCCAAATGATGAAAGTTCAGAAGATTACAGAGCAGGTCAAAAGAGAAAAGCTAACTTGGCATTTGATTTT TTTCAACCATGTAAATTAGAAACTGGGAGAGATGATAAAGTTCGAAATGACTTGAAATTTCAAAAGGTGGCTTTGGATCA CACGAACAAAAAGTGCAAAGGAAAACAAATTCTTACTGCTAAGCAAGCTACAGCTCTCGACAGAGCAAATTCTTTCAAAA CTTGTAAACCATTCTTCATGGCTTTCATGCACCCGTCATATTTCTATTGTAATCTGAGTATACCAGCCAAGTTTGGAAAG AAACACTTAGATTTGGGCCAGAACGTGGGTGATATCCAACTTAGGGTGTTAAATGGGAGATTTTGGCCTGCAAGGTACAT AATCAGGGAAAACGGTGAAAGAAAAAGATTTGATCTCTCATATTCAGGATGGAAGGCATTTTCTAAGGACAATAAGTTGA AAGTAGGTGATGTTTGTGTCTTTGAGCTCATTCATGGGACTAAACTTACCTTTCTGGTTCACATCTTTCGAGAGTCAGAA AATTCAAATTGTCCAACATCTCAAGAATACTCAAATAAAGCATCTATTGTATTCAAGGACAGGGAAAGGAAATGA
Protein sequence (LotjaGi1g1v0613700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQPMAGKFPHQPQLKKPTHFFKIISSHSLHEGKLMIPRAFVEKYEEGLPKTMFLKPPNGKDWKLNLVKLDGNMWFQKGW KEFAEHHSLAHGHLLVFKYQRTSHFQVQIFDMSALEINYNFKRVEGKRASNSEGNKPPNDESSEDYRAGQKRKANLAFDF FQPCKLETGRDDKVRNDLKFQKVALDHTNKKCKGKQILTAKQATALDRANSFKTCKPFFMAFMHPSYFYCNLSIPAKFGK KHLDLGQNVGDIQLRVLNGRFWPARYIIRENGERKRFDLSYSGWKAFSKDNKLKVGDVCVFELIHGTKLTFLVHIFRESE NSNCPTSQEYSNKASIVFKDRERK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 14 | 114 | 101 | 2.1E-28 | ||
| PANTHER | 16 | 323 | 308 | 1.5E-71 | – | |
| PANTHER | 16 | 323 | 308 | 1.5E-71 | – | |
| SUPERFAMILY | 18 | 120 | 103 | 9.02E-24 | ||
| ProSiteProfiles | 20 | 113 | 94 | 14.931 | ||
| CDD | 20 | 111 | 92 | 2.03557E-19 | ||
| Pfam | 21 | 111 | 91 | 1.6E-17 | ||
| SMART | 21 | 113 | 93 | 3.3E-18 | ||
| MobiDBLite | 127 | 148 | 22 | - | – | |
| Gene3D | 197 | 321 | 125 | 7.5E-31 | ||
| SUPERFAMILY | 212 | 319 | 108 | 1.53E-22 | ||
| CDD | 217 | 317 | 101 | 1.06305E-22 | ||
| SMART | 218 | 319 | 102 | 1.7E-16 | ||
| Pfam | 218 | 318 | 101 | 2.6E-19 | ||
| ProSiteProfiles | 232 | 319 | 88 | 11.843 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0613700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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