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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0620300 |
| Transcript ID | LotjaGi1g1v0620300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger A20 and AN1 domain stress-associated protein; TAIR: AT1G12440.1 A20/AN1-like zinc finger family protein; Swiss-Prot: sp|Q7Y1W9|SAP9_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 9; TrEMBL-Plants: tr|A0A072VPZ2|A0A072VPZ2_MEDTR Zinc finger A20 and AN1 domain stress-associated protein; Found in the gene: LotjaGi1g1v0620300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116766582..116767307) extracted from Lotus japonicus Gifu genome v1.2.
CTTACCCACATCGCTACTATTCCAACTCTCAACCATTCAAACTTGAGTCTTAATCAGAAACCTTTCCTCCATACTCGTCA ACATGTCTCCTCCATCACTTTGTGCTCCAGCACTCTGTGTCAATGGTTGTGGCTTCTATGCTTCAATCAATAACTTTTGT TCCAAATGTTTCAAAGATCATGTCAAAGAACACTCTGATCATAAATCAGAGAATGAAGGGGCTGGGAATGAAAACAAGAA CTTGAAAGCTTATATTGCTGAATTATGTGATGGTGTTGCTGCAATTAGTGTCACTGACTCTACAAGCATGAAGAAGAAGA GAAATAGGTGCGAGATTTGCAACAAGAAAGTTGGACTAACAGGGTTTGAGTGCCGATGTGGGAATCTATTTTGTGGAACG CATAGGTACCCAGAAGAGCACTCTTGTAATGTGGATTTCAAGAAGATTGGTCGTCAAGTTTTGGCCAAACAAAATCCTAA ATGTGTTGGTGACAAGCTAGAATACAGGGTCTAGCAAGGATATGAATCAGAAAAATTGTCCTGGTGTTCTATTTTGTTCT TAGATCAAGAGAATTGTATCAATGGTAATGTTTTTTTTATCAAGGATATGATTAAATAGAATTTTTCAATTGTTTTCTGT TCTTTTTTCTATCAAGATTTATAGACGCAACTATTTTTTTTGTGAATTTCGTACCCATTATTAGTCATCTTCATATTGCT TCCTAG
CDS sequence (LotjaGi1g1v0620300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCCTCCATCACTTTGTGCTCCAGCACTCTGTGTCAATGGTTGTGGCTTCTATGCTTCAATCAATAACTTTTGTTC CAAATGTTTCAAAGATCATGTCAAAGAACACTCTGATCATAAATCAGAGAATGAAGGGGCTGGGAATGAAAACAAGAACT TGAAAGCTTATATTGCTGAATTATGTGATGGTGTTGCTGCAATTAGTGTCACTGACTCTACAAGCATGAAGAAGAAGAGA AATAGGTGCGAGATTTGCAACAAGAAAGTTGGACTAACAGGGTTTGAGTGCCGATGTGGGAATCTATTTTGTGGAACGCA TAGGTACCCAGAAGAGCACTCTTGTAATGTGGATTTCAAGAAGATTGGTCGTCAAGTTTTGGCCAAACAAAATCCTAAAT GTGTTGGTGACAAGCTAGAATACAGGGTCTAG
Protein sequence (LotjaGi1g1v0620300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPPSLCAPALCVNGCGFYASINNFCSKCFKDHVKEHSDHKSENEGAGNENKNLKAYIAELCDGVAAISVTDSTSMKKKR NRCEICNKKVGLTGFECRCGNLFCGTHRYPEEHSCNVDFKKIGRQVLAKQNPKCVGDKLEYRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 141 | 133 | 1.2E-44 | – | |
| PANTHER | 9 | 141 | 133 | 1.2E-44 | – | |
| SMART | 9 | 31 | 23 | 0.0034 | ||
| SUPERFAMILY | 11 | 44 | 34 | 2.14E-7 | – | |
| CDD | 48 | 75 | 28 | 0.00233814 | – | |
| Gene3D | 65 | 137 | 73 | 2.0E-27 | ||
| SUPERFAMILY | 72 | 137 | 66 | 3.4E-27 | ||
| ProSiteProfiles | 80 | 123 | 44 | 12.535 | ||
| Pfam | 83 | 117 | 35 | 3.8E-10 | ||
| SMART | 83 | 120 | 38 | 1.6E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0620300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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