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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0620800 |
Transcript ID | LotjaGi1g1v0620800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT4G13965.1 F-box/FBD/LRR protein; Swiss-Prot: sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965; TrEMBL-Plants: tr|A0A072U9W4|A0A072U9W4_MEDTR F-box/RNI/FBD-like domain protein, putative; Found in the gene: LotjaGi1g1v0620800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116812802..116815382) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAATTTTACAAGGATCAAGTCTGATTTGCTTTACAATTACAGGGGACAAAAGAGTATTTAAGCCATCCAAAAATCAC TCAAGAAGGAGAAAGTGAAACCCTAATATTAACTCGAAATAATTGTCCATTGATTTGATCCTCCTCCTCGCAAGTGTGCA TCAATGGCGGATGGAATCAGCAATTTGCCAGATGATGTTCTGCTTCACATTCTCTCGTTCCTTCCTACTGAAGATGCTTT TGCGACAAGTCTTGTGTCCAAGAGATGGAGACCACTCTGGCTTTCAGTTCTCAATCTCGACTTTGTCGAACATAGATATA CTCGACATGGGAATAAACGTTTGCTACGACCATTCTCTTCCTTTATTGATGCATCCATTCTCAGACGAGGTATTCACCAA CCCATCAAAACTTGAGAATCTCCAATTCAATTGTTTGGCCTTTGGGCAGGACTTACCCTGCTCCATTTTCAGCATCAAAA CCCTTGTTGTTCTCAAGTTGAAATGCGTGGCTTTTAAGGTTTTTTCTTCTGTTGAACTTCCCTCACTCAAAACTCTGCAT TTGAACATGGTTCATGTTTTCAAGCCTCATCATTTAATGGAGCTTCTTAATGGGTGTCCCAATCTTGAAACTTTGAAAGC AAAGGATATAAGGTTTGATTTTATTGACCCTTCATTTAAGGGTAAGGGTAAGGGGAACCTTAAACCTTTATCAAAGCTTG TCAGAGCAGATCTTTCTCCCTGGATGATGAAGAGGCCGGGAACTTATTATATTGTTGAGTTTGTCCGCGAGGTTTGTATT TGGAAAAAGGAGAATCAATTCAGTTTGTTATTTGTTTTCTGTATCAATATTTCTGATCATTTAACTTTATAACTCTTGCA GTTCGGCCACGCTGACATTCCTATATTTCCCAATTTAATCCATTTTGAGCTCATCTTGGGAGGCAGTGTTAAAATGGAAG TGGTGCTCTATTTGCTCAATCATTGCCCTCAACTTCAAACTTTTCTCCTTCAAAACGTATGTTGTCTTGTAAACCAGGCT TGGCAAAATACACCTGTGGTTCCTGAATGCTTTTCTTCACAGCTCCAAACCTGCATTATTACAAAGTTTGAAGGTGCCAA AAGTGAGATGACATTTGCCAAGTTTGTTATGCAAAATTCAACGTTGTTACATACCATGACAATTTTCAGTTTCCCTAAAC TATCTCATGAGAAAAAGGCTGAAATTAGAATAGAATTAGAATCATGCCCAAAGAGCTCTGCAACCTGTGAACTTTTATTT AAGTAATTGGTATTCTTGTTAGTAGTTAAAAGCCATTCCTAGATAAATGCATTTGTAGTTAGTTCTGAATACTATGTTCT GCTGGTTTTGGTGCTTTTGAACACATAAACTTTGTGTCCTTGTAGTTGTTGGTACATCCTTGGGTATTGCTTATCTAATG CAGTAAACTGAAATAGGAATATATTTTTAAATTTGTTATGTGGGTGTGTATCCTTTAATTTTGAGTATTAGCCCTTTTAA TTGGGTGCTGGCTTCAATGTCTTATTAAAAAAGTTGAACACCTGTGCTGAGTTTTTTTTTTTTACTTGTTAAAGCCTGTG GAAGCAGGTAATCTCTGGGTCTAAAATCTTATTACAACAAATTTGTGGCTCTCTTAGGAATGTTGTGCTTCATTCTATAT CTCTTACATGTTTCAGTCTTTGCATTATGTATTTTTTGTGTCCTTGGAAAGATACAAGGTAGTTTACGTTTTTGGGGTCT ATATGTGTGTTTCATCATGGAAAGGTGCACGGTTCTTTTCATTTTTTAGCTTGGAGGTGTGTGTTCATGTTGAATGTAAT GAATTTTGAGAAAGAATTATTTTGAGAAATTAGTTATTTATTTTGTCAAATAGATATAAGATGTCACAGCAACTATTTGT GGACTAGGGAGAGCATGGGTTGAGTTTGCAGTCATTCCTTAGTTTATCTTGTAATACTTTGCATAGTATGTTGAAGATTG AATTAGTTTTAAAGCTAAATAAAGCGTGTGATTAACAGAGAAAGAAGCCTGTAGAAGATTTCCAGTCTTGTGAAATTAGG CCAGTTGGAAATGGCAGAAGATATATATATGTGCCTTTATGTGTGTGTGAACAAGGAAGTTATTTGGAAAGGGTATTGAT CAATGCTTTGTATGATGTTTGAAAGGTTAAAGAAGCCATTAGTTATGTGGATGAAATGAAAAGAGCTGGCTTGCCAGGGT ATACAGTTATATATAATTCTGTGATCAAGTTGTATGCCAAAGTTGACTACCTGAAATAAAGAAACATGCAAATTGCTTCA ATCATCAATAAAAGGTCATATGACTACCTGAAATATAAATTGGATTATATTTAACTGTATTCCCTGGACTTCTAGACAAT GATTCTGAGAAGGAACCCTGCGGGGAGGCAAGCTTGAATGCTTTAAATTTTTTATGAATTATTAGATAAATTGTAAATTG AAAAAAAAAATTGCAATACTTCATGGACCATTTGCATACAATTTTCCACTATGAAATTCCTTTTCAGAATGAAAGGGAAA ATCATATTCTCATGTTGTTTT
CDS sequence (LotjaGi1g1v0620800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCAGCAATTTGCCAGATGATGTTCTGCTTCACATTCTCTCGTTCCTTCCTACTGAAGATGCTTTTGCGACAAGT CTTGTGTCCAAGAGATGGAGACCACTCTGGCTTTCAGTTCTCAATCTCGACTTTGTCGAACATAGATATACTCGACATGG GAATAAACGTTTGCTACGACCATTCTCTTCCTTTATTGATGCATCCATTCTCAGACGAGGTATTCACCAACCCATCAAAA CTTGAGAATCTCCAATTCAATTGTTTGGCCTTTGGGCAGGACTTACCCTGCTCCATTTTCAGCATCAAAACCCTTGTTGT TCTCAAGTTGAAATGCGTGGCTTTTAAGGTTTTTTCTTCTGTTGAACTTCCCTCACTCAAAACTCTGCATTTGAACATGG TTCATGTTTTCAAGCCTCATCATTTAATGGAGCTTCTTAATGGGTGTCCCAATCTTGAAACTTTGAAAGCAAAGGATATA AGGTTTGATTTTATTGACCCTTCATTTAAGGGTAAGGGTAAGGGGAACCTTAAACCTTTATCAAAGCTTGTCAGAGCAGA TCTTTCTCCCTGGATGATGAAGAGGCCGGGAACTTATTATATTGTTGAGTTTGTCCGCGAGTTCGGCCACGCTGACATTC CTATATTTCCCAATTTAATCCATTTTGAGCTCATCTTGGGAGGCAGTGTTAAAATGGAAGTGGTGCTCTATTTGCTCAAT CATTGCCCTCAACTTCAAACTTTTCTCCTTCAAAACGTATGTTGTCTTGTAAACCAGGCTTGGCAAAATACACCTGTGGT TCCTGAATGCTTTTCTTCACAGCTCCAAACCTGCATTATTACAAAGTTTGAAGGTGCCAAAAGTGAGATGACATTTGCCA AGTTTGTTATGCAAAATTCAACGTTGTTACATACCATGACAATTTTCAGTTTCCCTAAACTATCTCATGAGAAAAAGGCT GAAATTAGAATAGAATTAGAATCATGCCCAAAGAGCTCTGCAACCTGTGAACTTTTATTTAAGTAA
Protein sequence (LotjaGi1g1v0620800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESAICQMMFCFTFSRSFLLKMLLRQVLCPRDGDHSGFQFSISTLSNIDILDMGINVCYDHSLPLLMHPFSDEVFTNPSK LENLQFNCLAFGQDLPCSIFSIKTLVVLKLKCVAFKVFSSVELPSLKTLHLNMVHVFKPHHLMELLNGCPNLETLKAKDI RFDFIDPSFKGKGKGNLKPLSKLVRADLSPWMMKRPGTYYIVEFVREFGHADIPIFPNLIHFELILGGSVKMEVVLYLLN HCPQLQTFLLQNVCCLVNQAWQNTPVVPECFSSQLQTCIITKFEGAKSEMTFAKFVMQNSTLLHTMTIFSFPKLSHEKKA EIRIELESCPKSSATCELLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 9 | 9 | - | – | |
Phobius | 1 | 25 | 25 | - | – | |
SignalP_EUK | 1 | 29 | 29 | - | – | |
Phobius | 10 | 20 | 11 | - | – | |
Phobius | 21 | 25 | 5 | - | – | |
Phobius | 26 | 341 | 316 | - | – | |
Gene3D | 36 | 278 | 243 | 6.4E-9 | ||
SUPERFAMILY | 50 | 258 | 209 | 2.43E-11 | – | |
PANTHER | 81 | 338 | 258 | 1.6E-47 | – | |
PANTHER | 81 | 338 | 258 | 1.6E-47 | – | |
Pfam | 267 | 308 | 42 | 1.9E-13 | ||
SMART | 269 | 341 | 73 | 4.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0620800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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