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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0623500 |
Transcript ID | LotjaGi1g1v0623500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glycosyltransferase; TAIR: AT2G02061.2 Nucleotide-diphospho-sugar transferase family protein; Swiss-Prot: sp|P0C042|Y4597_ARATH Uncharacterized protein At4g15970; TrEMBL-Plants: tr|A0A151QQL2|A0A151QQL2_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi1g1v0623500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117093255..117095737) extracted from Lotus japonicus Gifu genome v1.2.
TCTGCTTCTCTTAGAGCATCTCCAATTATGGTTTTAGTGCAAAGGATTTCTCTCAACGCATTGGGTTCTTTCTCAATAGC ACTTAAGTAAACACAAGCTCAAACTTTCAGGCCACAAATAAACAGATTTTTGGCCTAAAGACCCTTAATTGGAGTATTAT TTGCCCTGGGAAGGATGAGAGCTTTGGGGTTGAGAAGGTCTTTGTATCTTCTCACAGCTTTCTTGATCGTGCTGCTATGG TTCTTTCAGTATTGCTACCCTGGACATGTTGAAAGGGGTTACATTAAGGTATTCAGTTCAAGCTTAGATCAGCAGTAAAC ATTAGTGTCTGTAGGTTCTTTTCCATTTGATTTTTGTGTGAATCATAAAATTTAAGTATTTATCATTAATCATTTGAAGC TTCAAAAATTAATTTGATTAGGGATAAAAAAATATTTGTGAATAGGTGAAAGTTTAAGGTGAACTATTGAAGAATTCATA AATGCATGTTATGCCTGCTTACCAATGGTTGATTTAGGTGATACATGTCTCAGGTTTGAGTATTATGTATAGAAAAAACT TTTGATGTGAGAGCTAGTCCTCCCATAACATATATATTTAGGCTTGAGTAAATTGTCTTATGTGAAGAAAATCTGTGCCA AAACAAAAAAGTAAAATAATAATAGCTTATAACTAAAAAATTTACTAGGAGAGTGCATTTTATTTGAAAACATGTTTTTA AACTAAGGCATATTTTAAAAAATTATCTTTAGTTTTTTAGTCGCTAAAACAAGGTAATCCAAATAAGTGATAGAGTATTG TCAAAATTGATTGATTGCATATTGAATAAGAGTATATATTGACCAAATTATTGAGGTTCTCCCAAGTTAATGTGCCATTT TGTTCCTATCAGCAACGCTCACAAGAACATGAATTGATTCAAGTGCTGAGGAGAGCGAGCATGCCAGACAGAACAGTGAT CCTAACCATGGTAGATGAATCAAGGGCAAGTCCTGGATCCTTGCTTGAAGTTTTACTACAAAGTTTCAAATCTGGGGAAG GGACGCAAAGATTTTTGAATCACTTGGTGATCATAACCATGGACCCCCAAGCTTTTAAGTACTGCAGAACCTTGCATCCC CACTGCATTCACCCCTCCACCTTTGAAGCTTATTTTTCCCCCATGAGACAATCCACCACAAAACCATATCAGAATGCATT CAGTTGGAGAAGAAACAATGTTTTGTTAGAAGTGCTTGATTTGGGCTACAACATAATTTTCACGGTACGCGTTGTAATTA GCTTGAGTTAGAAAATGATGGATGAATGGTTTGAGCCAACCCTCAAATACATCCTTGATAGATACAACACTCCATAGTTG CATCTCTAAAAGAAGGAAATCCCTTCAGAGTGTCAAACATCAGTCAAGTTGGTCCCGCCGTGATTGACACATGAGGGACT TTTGAAGGTATCTTCTTCTTTCAGGGACGAAACTGCCCGACATTGTCTCTTTCAAGGACGATTTTGAGAGTTCACTTGTT TATTGACTTTATTCCTGAACTTGAATTGCATATGAACATGTTATTTTCATTTTGTAGGATGTTGATGTATTGTGGCTAAG AAGTCCATTGTCAAACTTCAATCCTGCGTATGAACTCTCAATTTCATGCACATTATCCAGTGAAGGACAAAGGGAAGGTT ACCCGCGAGGTGGGGGAATTTTCTTCTTGAAAGCAAATGCCATAGCCATAGAATTCTTCAAGTACTGGAAATTTATCAAG GTTCTGTATCCAAACTCTGACGTGGAAGAATCATTGTGTAGAACTATAATAGAGAGTCAGGATGTAACCAACGTTCTCGG CTTCCGTGTTCAGCCTGTAAATACAACTTATTTTGGTGGATTTTGTCAGTTAAATCAGGATATGTTGAGGGATGCTTATA CTATCCATGCTAACTGTTGTGATGATCTGACAAGCAAAGTTCATGACCTGAGGATTGTTCTAGATGACTGGATCCGCTTC AGAAAACGCGTATCAGGGGATAATGCTTCAGATGAAATGGCTTTGAGGTGGCCACAGAAATGCCCGAGATGAAAATAGAA ATAGGAAAAGAACCACATCCAGTTGTCAAGTGTTCAGAAATAATTAGCACTAAGAAAAGTACCATGTAGCTGACATCTTC AAAGATTGGTGAAATGTGAAACATCTGAGTTGGTAGTTGGTACATTATAGTGGGCAAGCAAGGGAAAAGAAATGTATTAC ATGTTTTATACATTTAAAAGTATTGTTTAGTTTTGAAACAATTTCTTTTGCATTTTTCTGATATAATTGATGATCTCCCA TCTAATTTGTCATTCTACTCTCCAGAAGTATAGACTTGAGGCTGATTCAGAACTAACCTTTTTTTTGTCTTTGAGGGGTG TAAACCCGTCCGGGAAACTGTAGCAGTCCCTCCCAATAGATAACTTTCTAGGGATTCGAACTTGTGTCTTCACTCTTACT CCG
CDS sequence (LotjaGi1g1v0623500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAGCTTTGGGGTTGAGAAGGTCTTTGTATCTTCTCACAGCTTTCTTGATCGTGCTGCTATGGTTCTTTCAGTATTG CTACCCTGGACATGTTGAAAGGGGTTACATTAAGCAACGCTCACAAGAACATGAATTGATTCAAGTGCTGAGGAGAGCGA GCATGCCAGACAGAACAGTGATCCTAACCATGGTAGATGAATCAAGGGCAAGTCCTGGATCCTTGCTTGAAGTTTTACTA CAAAGTTTCAAATCTGGGGAAGGGACGCAAAGATTTTTGAATCACTTGGTGATCATAACCATGGACCCCCAAGCTTTTAA GTACTGCAGAACCTTGCATCCCCACTGCATTCACCCCTCCACCTTTGAAGCTTATTTTTCCCCCATGAGACAATCCACCA CAAAACCATATCAGAATGCATTCAGTTGGAGAAGAAACAATGTTTTGTTAGAAGTGCTTGATTTGGGCTACAACATAATT TTCACGGATGTTGATGTATTGTGGCTAAGAAGTCCATTGTCAAACTTCAATCCTGCGTATGAACTCTCAATTTCATGCAC ATTATCCAGTGAAGGACAAAGGGAAGGTTACCCGCGAGGTGGGGGAATTTTCTTCTTGAAAGCAAATGCCATAGCCATAG AATTCTTCAAGTACTGGAAATTTATCAAGGTTCTGTATCCAAACTCTGACGTGGAAGAATCATTGTGTAGAACTATAATA GAGAGTCAGGATGTAACCAACGTTCTCGGCTTCCGTGTTCAGCCTGTAAATACAACTTATTTTGGTGGATTTTGTCAGTT AAATCAGGATATGTTGAGGGATGCTTATACTATCCATGCTAACTGTTGTGATGATCTGACAAGCAAAGTTCATGACCTGA GGATTGTTCTAGATGACTGGATCCGCTTCAGAAAACGCGTATCAGGGGATAATGCTTCAGATGAAATGGCTTTGAGGTGG CCACAGAAATGCCCGAGATGA
Protein sequence (LotjaGi1g1v0623500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRALGLRRSLYLLTAFLIVLLWFFQYCYPGHVERGYIKQRSQEHELIQVLRRASMPDRTVILTMVDESRASPGSLLEVLL QSFKSGEGTQRFLNHLVIITMDPQAFKYCRTLHPHCIHPSTFEAYFSPMRQSTTKPYQNAFSWRRNNVLLEVLDLGYNII FTDVDVLWLRSPLSNFNPAYELSISCTLSSEGQREGYPRGGGIFFLKANAIAIEFFKYWKFIKVLYPNSDVEESLCRTII ESQDVTNVLGFRVQPVNTTYFGGFCQLNQDMLRDAYTIHANCCDDLTSKVHDLRIVLDDWIRFRKRVSGDNASDEMALRW PQKCPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 29 | 29 | - | – | |
Phobius | 1 | 11 | 11 | - | – | |
TMHMM | 9 | 26 | 18 | - | – | |
Phobius | 12 | 24 | 13 | - | – | |
Phobius | 25 | 29 | 5 | - | – | |
Phobius | 30 | 326 | 297 | - | – | |
PANTHER | 37 | 323 | 287 | 1.6E-133 | – | |
PANTHER | 37 | 323 | 287 | 1.6E-133 | – | |
Pfam | 92 | 293 | 202 | 1.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0623500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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