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LotjaGi1g1v0623500.1

Overview

Field Value
Gene ID LotjaGi1g1v0623500
Transcript ID LotjaGi1g1v0623500.1
Lotus japonicus genome version Gifu v1.2
Description Glycosyltransferase; TAIR: AT2G02061.2 Nucleotide-diphospho-sugar transferase family protein; Swiss-Prot: sp|P0C042|Y4597_ARATH Uncharacterized protein At4g15970; TrEMBL-Plants: tr|A0A151QQL2|A0A151QQL2_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi1g1v0623500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:117093255..117095737) extracted from Lotus japonicus Gifu genome v1.2.

TCTGCTTCTCTTAGAGCATCTCCAATTATGGTTTTAGTGCAAAGGATTTCTCTCAACGCATTGGGTTCTTTCTCAATAGC ACTTAAGTAAACACAAGCTCAAACTTTCAGGCCACAAATAAACAGATTTTTGGCCTAAAGACCCTTAATTGGAGTATTAT TTGCCCTGGGAAGGATGAGAGCTTTGGGGTTGAGAAGGTCTTTGTATCTTCTCACAGCTTTCTTGATCGTGCTGCTATGG TTCTTTCAGTATTGCTACCCTGGACATGTTGAAAGGGGTTACATTAAGGTATTCAGTTCAAGCTTAGATCAGCAGTAAAC ATTAGTGTCTGTAGGTTCTTTTCCATTTGATTTTTGTGTGAATCATAAAATTTAAGTATTTATCATTAATCATTTGAAGC TTCAAAAATTAATTTGATTAGGGATAAAAAAATATTTGTGAATAGGTGAAAGTTTAAGGTGAACTATTGAAGAATTCATA AATGCATGTTATGCCTGCTTACCAATGGTTGATTTAGGTGATACATGTCTCAGGTTTGAGTATTATGTATAGAAAAAACT TTTGATGTGAGAGCTAGTCCTCCCATAACATATATATTTAGGCTTGAGTAAATTGTCTTATGTGAAGAAAATCTGTGCCA AAACAAAAAAGTAAAATAATAATAGCTTATAACTAAAAAATTTACTAGGAGAGTGCATTTTATTTGAAAACATGTTTTTA AACTAAGGCATATTTTAAAAAATTATCTTTAGTTTTTTAGTCGCTAAAACAAGGTAATCCAAATAAGTGATAGAGTATTG TCAAAATTGATTGATTGCATATTGAATAAGAGTATATATTGACCAAATTATTGAGGTTCTCCCAAGTTAATGTGCCATTT TGTTCCTATCAGCAACGCTCACAAGAACATGAATTGATTCAAGTGCTGAGGAGAGCGAGCATGCCAGACAGAACAGTGAT CCTAACCATGGTAGATGAATCAAGGGCAAGTCCTGGATCCTTGCTTGAAGTTTTACTACAAAGTTTCAAATCTGGGGAAG GGACGCAAAGATTTTTGAATCACTTGGTGATCATAACCATGGACCCCCAAGCTTTTAAGTACTGCAGAACCTTGCATCCC CACTGCATTCACCCCTCCACCTTTGAAGCTTATTTTTCCCCCATGAGACAATCCACCACAAAACCATATCAGAATGCATT CAGTTGGAGAAGAAACAATGTTTTGTTAGAAGTGCTTGATTTGGGCTACAACATAATTTTCACGGTACGCGTTGTAATTA GCTTGAGTTAGAAAATGATGGATGAATGGTTTGAGCCAACCCTCAAATACATCCTTGATAGATACAACACTCCATAGTTG CATCTCTAAAAGAAGGAAATCCCTTCAGAGTGTCAAACATCAGTCAAGTTGGTCCCGCCGTGATTGACACATGAGGGACT TTTGAAGGTATCTTCTTCTTTCAGGGACGAAACTGCCCGACATTGTCTCTTTCAAGGACGATTTTGAGAGTTCACTTGTT TATTGACTTTATTCCTGAACTTGAATTGCATATGAACATGTTATTTTCATTTTGTAGGATGTTGATGTATTGTGGCTAAG AAGTCCATTGTCAAACTTCAATCCTGCGTATGAACTCTCAATTTCATGCACATTATCCAGTGAAGGACAAAGGGAAGGTT ACCCGCGAGGTGGGGGAATTTTCTTCTTGAAAGCAAATGCCATAGCCATAGAATTCTTCAAGTACTGGAAATTTATCAAG GTTCTGTATCCAAACTCTGACGTGGAAGAATCATTGTGTAGAACTATAATAGAGAGTCAGGATGTAACCAACGTTCTCGG CTTCCGTGTTCAGCCTGTAAATACAACTTATTTTGGTGGATTTTGTCAGTTAAATCAGGATATGTTGAGGGATGCTTATA CTATCCATGCTAACTGTTGTGATGATCTGACAAGCAAAGTTCATGACCTGAGGATTGTTCTAGATGACTGGATCCGCTTC AGAAAACGCGTATCAGGGGATAATGCTTCAGATGAAATGGCTTTGAGGTGGCCACAGAAATGCCCGAGATGAAAATAGAA ATAGGAAAAGAACCACATCCAGTTGTCAAGTGTTCAGAAATAATTAGCACTAAGAAAAGTACCATGTAGCTGACATCTTC AAAGATTGGTGAAATGTGAAACATCTGAGTTGGTAGTTGGTACATTATAGTGGGCAAGCAAGGGAAAAGAAATGTATTAC ATGTTTTATACATTTAAAAGTATTGTTTAGTTTTGAAACAATTTCTTTTGCATTTTTCTGATATAATTGATGATCTCCCA TCTAATTTGTCATTCTACTCTCCAGAAGTATAGACTTGAGGCTGATTCAGAACTAACCTTTTTTTTGTCTTTGAGGGGTG TAAACCCGTCCGGGAAACTGTAGCAGTCCCTCCCAATAGATAACTTTCTAGGGATTCGAACTTGTGTCTTCACTCTTACT CCG 

CDS sequence (LotjaGi1g1v0623500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAGCTTTGGGGTTGAGAAGGTCTTTGTATCTTCTCACAGCTTTCTTGATCGTGCTGCTATGGTTCTTTCAGTATTG CTACCCTGGACATGTTGAAAGGGGTTACATTAAGCAACGCTCACAAGAACATGAATTGATTCAAGTGCTGAGGAGAGCGA GCATGCCAGACAGAACAGTGATCCTAACCATGGTAGATGAATCAAGGGCAAGTCCTGGATCCTTGCTTGAAGTTTTACTA CAAAGTTTCAAATCTGGGGAAGGGACGCAAAGATTTTTGAATCACTTGGTGATCATAACCATGGACCCCCAAGCTTTTAA GTACTGCAGAACCTTGCATCCCCACTGCATTCACCCCTCCACCTTTGAAGCTTATTTTTCCCCCATGAGACAATCCACCA CAAAACCATATCAGAATGCATTCAGTTGGAGAAGAAACAATGTTTTGTTAGAAGTGCTTGATTTGGGCTACAACATAATT TTCACGGATGTTGATGTATTGTGGCTAAGAAGTCCATTGTCAAACTTCAATCCTGCGTATGAACTCTCAATTTCATGCAC ATTATCCAGTGAAGGACAAAGGGAAGGTTACCCGCGAGGTGGGGGAATTTTCTTCTTGAAAGCAAATGCCATAGCCATAG AATTCTTCAAGTACTGGAAATTTATCAAGGTTCTGTATCCAAACTCTGACGTGGAAGAATCATTGTGTAGAACTATAATA GAGAGTCAGGATGTAACCAACGTTCTCGGCTTCCGTGTTCAGCCTGTAAATACAACTTATTTTGGTGGATTTTGTCAGTT AAATCAGGATATGTTGAGGGATGCTTATACTATCCATGCTAACTGTTGTGATGATCTGACAAGCAAAGTTCATGACCTGA GGATTGTTCTAGATGACTGGATCCGCTTCAGAAAACGCGTATCAGGGGATAATGCTTCAGATGAAATGGCTTTGAGGTGG CCACAGAAATGCCCGAGATGA 

Protein sequence (LotjaGi1g1v0623500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRALGLRRSLYLLTAFLIVLLWFFQYCYPGHVERGYIKQRSQEHELIQVLRRASMPDRTVILTMVDESRASPGSLLEVLL QSFKSGEGTQRFLNHLVIITMDPQAFKYCRTLHPHCIHPSTFEAYFSPMRQSTTKPYQNAFSWRRNNVLLEVLDLGYNII FTDVDVLWLRSPLSNFNPAYELSISCTLSSEGQREGYPRGGGIFFLKANAIAIEFFKYWKFIKVLYPNSDVEESLCRTII ESQDVTNVLGFRVQPVNTTYFGGFCQLNQDMLRDAYTIHANCCDDLTSKVHDLRIVLDDWIRFRKRVSGDNASDEMALRW PQKCPR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 29 29 -
Phobius 1 11 11 -
TMHMM 9 26 18 -
Phobius 12 24 13 -
Phobius 25 29 5 -
Phobius 30 326 297 -
PANTHER 37 323 287 1.6E-133
PANTHER 37 323 287 1.6E-133
Pfam 92 293 202 1.2E-34

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0623500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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