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LotjaGi1g1v0624100.2

Overview

Field Value
Gene ID LotjaGi1g1v0624100
Transcript ID LotjaGi1g1v0624100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Protease HtpX; TAIR: AT3G27110.1 Peptidase family M48 family protein; Swiss-Prot: sp|Q8TP15|HTPX2_METAC Protease HtpX homolog 2; TrEMBL-Plants: tr|A0A151U0F2|A0A151U0F2_CAJCA Putative protease htpX isogeny 2; Found in the gene: LotjaGi1g1v0624100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:117141197..117145789) extracted from Lotus japonicus Gifu genome v1.2.

GATTGTCAACAGAAAATGAAGTGGCGCGAAACAGGTACCACCGGTACTGCTGTGGCCACAACTTGCCTTACGTCAACACC AATCGTAAACTACCGATTCCCCCAAATATCACATGATTAACGGTCCAGTGTGCACTGCGCACTCCATTTCACCTCAACCA AACCACCTTCCCCAAGCTAACCTGCGCCTTCTCAATGGCTTCCCCTTCTTTCTCCACTCTCTCCCTCTGTCACCATAAAC CCACTGCTCCCGCCCTCGGCCGATTACGGTTCGGCGGCGGTTCGACGATCCGGTTCGCGAGGGTCCAGAAGAATCGGAAA TTCGGAATCCCGGTCTGCAGAGCGGGTTCCGCCGTCGTCTTCCGGAACCTCGACGCCGACGATTTTCGCCACCCTCTTGA CAAACAGGTGTGCTCCAATTTCGCTGTGGCGGAACACAGCGACGTCGTTTTGGCTTGAATTGAAGTAGCTCTAAGTGCTT CTCTTTCGTTCTTTCTTTTTTGTTTGTTTCGGAAGCGCTAATTCTTGGTTGTTTGTTCTCTTTTATATTTCCAGAATACG TTGATTCTGAGAGCGATTCCGGGGTTGAATGAACTTGGAAAAGCTCTTCTAGGTAATTGACAAGTGCCTTGTGTACTTAA TTGTTCAGTTTATAGTTGGATTGTTAAATTTCTAAATGGATAGATATATATATTTTTTTTTTTAATTTTGTGGGCAGAAT AAATAGGAACAGTTGATTGAGTGTTAATTATCACAAGGATGTAAATATCGAGCTGATATTAGAACTTTTCCTTCATTCTG TCACGAACCAATTATCGCAAAAGCTGTTGTTGGGTAAAAGGACTATGAATGATTTTATATTATATTTCTAACACATCCAA TTTGGTTTTGCTGATTACTGAAAAGTAAAACTCATGCAAATGTGAGTTTGTGCTTTGATTTTTAACATTTGTTAAGCTAA TGGAGAGTTTCACTTTTCAGTTTCAATAGCCTTTTTAGTAGAGCCTACAATTTACTTACATGTGAACTTCTAGACTGAAA TTATATTTCCCCACTGAAATTACTACTTGTATGTGTGCTTTTAGATCTTGGTAGATATGTTTTTGTGTTGTTGTATGATG TGCATGAATTAAAGATGCATTGCTTTTGTTACCGTCACTCACAAGCACCTTATGTTCAATGATAACTGAAATGCAGGAAC TGTAGCGGAGCAGGTCATGCTCCTTGAGAACATCGGGACATCGATACTTGTTTCCAAAAATCAGGTATCCAGGCCATAAC ACTCATTATGATAAATTTTTCTTCTAGGAGTACTTGATGAACAGTATCATAGGCAAATATGTCGTTTAATAGATAAAATA CCTCCTCTGAACAGTTCTCACCTATTAGGGTATGTTTGTCTGAAAGCTTTTGGGGGAAAGGGAAGAGAGGGCAAGGTTTT TAATTTTAAAATAAAAAAGTTATGTAATGTTTTAAAAATAATCAAAAGATTGGGACATTAACTTGCTCCTCTACTTATTA CCAACTTGGCAATGGTTCTTCAGATTATATATGAATGATTTGAACTATCTTCACTTCACATTCCTTCTTTTATCATTTCC ACTTAGTTGAGCTGTATGCGACTTGAACCAACAAATAATTCAATTTACTGTGGAGTTTTGCCACCTAACACCTCATATTA GTAACTAAACTTTTCTTCTTGTTGTGTCAGCTTCCTGATCTTCACCATTTAATAGTTGAAGCTGCAGAAATATTAAATGT TGATGCCCCTGATCTATATGTTCGGCAAAGTCCTGTGCCAAATGCATATACATTAGCTATTAGTGGCAAACGACCATTCG TTGTTGTTCATACTAGCCTTGTGGAGCTTCTGACAAGAGCCGAGTTGCAGGTTCTAATTTATTTTGTATACATCTTTTTA ACTCTCATCCCTGACTGTGTCTATTTTAGCATCCAAGAAGTCCCCCCTATTCTGCCTAGTCCACAACAGATAAGATTTTG AAAGTTGCACTTGGAGATGAATAATTTTTTATATAGGAACTATTGTATATTATTTACATTCTTCTCTTCCAACTCACCCG ATCTATTTGTTAATCTAGTCATTCTTTTTCCATCTTTTCCATTGTTCTAGTTCCAAAATGCTATTAACTTACCATCAGTT TACTTTAACAGGCTGTTTTGGCTCATGAGCTGGGTCATCTAAAATGTGATCATGGTGTGTGGCTTACATATGCAAATATT CTAACCCTTGGAGCCTATACTGTACCTGGTAGGTGATATGGAGCATTTTGTTGTTTTCATTTTCAATGATGTTGTATGCC CATGGTTATATGTTATGCATTTTGGCGAAGTAGTTGGAGGACCATTTTTTGTCAAAGTTGGAGGACCATTTTTTGTCTGA TTCCTATGGACTGAACTGTTATGAAATCCATGTCAGTCTTACACTCTTACCACTTATTGAATGTAGCAACCATGAGGACT TGTCTATAAGGCCGTTATTCATATTTTCAAAAAAATTATTTCTCCTTTGATAGAATAGCTTATATTGATAATGGACATAT ATCAAACTCTAGCTGTTGCATCTCTTGTTAAATGTTAGATCAAACAGTTTATTCATTGTCTATTCTACTGAATAGTATCA TTTGTTGCAGGCATTGGCAGTTTCATAGCTCGGAGTTTGGAAGAGCAGTTGTTCCGCTGGCTTCGGGCAGCTGAGTTGAC TTGTGATCGTGCAGCTCTTCTTGTTGCCCAAGACCCTAAAGTATGCTGATTTCGAATCTAAAGTTTGTTATTGATTGGTT TGATTTTAACTTCTCTATTCTCTTATCTGTTGGTTTTGGTATAACTATAATTAATTTTTTGTTTCCTAATCCTACAAGAG GTTGTCATCTCTGTTCTCATGAAATTAGCTGGGGGATGCCCATCTTTGGCTGATCAATTAAATGTGGATGCGTTCCTGGA GCAAGCACGTTCTTACGAGAAAGCTGCTTCCAGCCCAGTTGGGTGGTATATCAGGTTTGTAGCAACCTGCGTAGGCCACT AGGAATTTGGGTTCCAACTTTTCTCATTTAAAGCCTAAATTTTTTCTGCTGATTAGGAATGCACAAACGAGGCAACTGTC GCATCCTCTGCCAGTTCTACGTGCTAGTGAAATTGATGAATGGTCAAAAAGTCCTGCTTACACATCTCTTTTGAAACTTG GGACAAAGACGAGATCAACACAAAGTGTCTAGAAGTGTCTGCGTGGTTGTTTCAAAATGGAAAACAGCTCGAGGTTCATC TGGTTAGTTTCTGAATTTCATCAAAGATGGTAAAATGTCCAACAATAATTTATGGCGTTAGGCCAGCTATGTTGCCCCTT GCAAATGACAGAGCCATAACAGATCGTGCACTGCTAATTTGTTTTGATATGCATAATGCATTATGTATTGGTAGCAATTT CATTTCTCACTTTTTTTTTTATTTGTGAAATATTCAGTCCCAGGCGGCAGATGATCAAAAGTTGTTGGGAAGCAGTAGGA TTTATTGCGGATTCTATGGCTGGTGCACAACTCTTGTACTAATATTGTAAATCTGCAACTATATTCACTGTGATTGTAAT ATTCGTCAAACTGTAAGTAGAATTTTGATGAAAATAGATAGGAATTATTTCATAGAAACATTGACCCTTGGAAAGGAAGG AACCGTATGTATAATTCTAGTCGATAATTTTCCTTCGACAAATTAGAAACGCTACTTGTAAAGTATTTCTATGAATAATA CTGAGTACAAAATTTGTACGTGTCCAAAGTTATTTGGTTATATACTAATGAGTACAAGAAAGAAAAATCGATGTGATCTA CTGGATCAAACAACAACAAAAATGAGAGTTTTAGGTAGTGTTTGGTGAGAGTGAGACTTTGCTGAACTCCTCTCAATCTG TTACTGCTCCAAGGTCTTCTTCAGCCTATGCAAGTGTAAAGGCATTTGCTGCAAGTGTTTGCACAGCCAATAAGAACATG ATAATGGTGTAGATGAACTTAAAAAGTTGTACTCAATGCATGCTAATCGAATCAAAAGAATTTCAAAATTTCCCATAGGT TTGGGTGGCCCAAACCATTGTATGTTTTATTAGGGGTATATTTGTAAATTAGTAAGTAATGCATGATACCCGTTCTAATT TAGTGGTGCTCCCTAAACCCATCCAAAGATAGTGCGCAAAGAAAAAGAAACGAAAAACAACCATAGCCAATGGTAACGAT AGAGAGTGAACAAACGTGACAAATCAGCAGAATGAAAATGCCTGAATAGGACCCACCACAGTCCATCATCCTCCACCAAT GGCGAATGTTACCAAAATCCCCTATAGAAGCCATTGACGTCGTTGCCACCTTGTGTTGTTCCTGAGACATCATAGAAGAA TGACTGGAATCACAGGCCCTTCAGATTACTCCACAGAGCCTCCTCGTCACCCATGTCTTCAAATTAACTCCAAGGCAACC TTCTCACTTTTTGTTTATTTATTTCCTTTTCTAATAATGTATATTGCAATTACAGTTGCCTTCTTATATATACTATCATG ATGATACCATATATATATATATTGTATTTAATT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0624100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCCCCTTCTTTCTCCACTCTCTCCCTCTGTCACCATAAACCCACTGCTCCCGCCCTCGGCCGATTACGGTTCGG CGGCGGTTCGACGATCCGGTTCGCGAGGGTCCAGAAGAATCGGAAATTCGGAATCCCGGTCTGCAGAGCGGGTTCCGCCG TCGTCTTCCGGAACCTCGACGCCGACGATTTTCGCCACCCTCTTGACAAACAGAATACGTTGATTCTGAGAGCGATTCCG GGGTTGAATGAACTTGGAAAAGCTCTTCTAGGAACTGTAGCGGAGCAGGTCATGCTCCTTGAGAACATCGGGACATCGAT ACTTGTTTCCAAAAATCAGCTTCCTGATCTTCACCATTTAATAGTTGAAGCTGCAGAAATATTAAATGTTGATGCCCCTG ATCTATATGTTCGGCAAAGTCCTGTGCCAAATGCATATACATTAGCTATTAGTGGCAAACGACCATTCGTTGTTGTTCAT ACTAGCCTTGTGGAGCTTCTGACAAGAGCCGAGTTGCAGGCTGTTTTGGCTCATGAGCTGGGTCATCTAAAATGTGATCA TGGTGTGTGGCTTACATATGCAAATATTCTAACCCTTGGAGCCTATACTGTACCTGGCATTGGCAGTTTCATAGCTCGGA GTTTGGAAGAGCAGTTGTTCCGCTGGCTTCGGGCAGCTGAGTTGACTTGTGATCGTGCAGCTCTTCTTGTTGCCCAAGAC CCTAAAGTTGTCATCTCTGTTCTCATGAAATTAGCTGGGGGATGCCCATCTTTGGCTGATCAATTAAATGTGGATGCGTT CCTGGAGCAAGCACGTTCTTACGAGAAAGCTGCTTCCAGCCCAGTTGGGTGGTATATCAGGAATGCACAAACGAGGCAAC TGTCGCATCCTCTGCCAGTTCTACGTGCTAGTGAAATTGATGAATGGTCAAAAAGTCCTGCTTACACATCTCTTTTGAAA CTTGGGACAAAGACGAGATCAACACAAAGTGTCTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0624100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASPSFSTLSLCHHKPTAPALGRLRFGGGSTIRFARVQKNRKFGIPVCRAGSAVVFRNLDADDFRHPLDKQNTLILRAIP GLNELGKALLGTVAEQVMLLENIGTSILVSKNQLPDLHHLIVEAAEILNVDAPDLYVRQSPVPNAYTLAISGKRPFVVVH TSLVELLTRAELQAVLAHELGHLKCDHGVWLTYANILTLGAYTVPGIGSFIARSLEEQLFRWLRAAELTCDRAALLVAQD PKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYEKAASSPVGWYIRNAQTRQLSHPLPVLRASEIDEWSKSPAYTSLLK LGTKTRSTQSV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10120:SF26
34 326 293 1.2E-153 –
PANTHER
PTHR10120
34 326 293 1.2E-153
IPR027057
CDD
cd07325
103 308 206 8.9857E-82 –
Gene3D
G3DSA:3.30.2010.10
108 194 87 4.0E-15 –
Pfam
PF01435
115 309 195 2.0E-18
IPR001915

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004222
Molecular function Metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008233
Molecular function Peptidase activity Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
Subterm of
GO:0071586
Biological process CAAX-box protein processing The second process in a series of specific posttranslational modifications to the CAAX box region of CAAX box proteins, in which the last three amino acids of the protein (AAX) are removed by proteolysis.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0624100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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