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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0624100 |
Transcript ID | LotjaGi1g1v0624100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protease HtpX; TAIR: AT3G27110.1 Peptidase family M48 family protein; Swiss-Prot: sp|Q8TP15|HTPX2_METAC Protease HtpX homolog 2; TrEMBL-Plants: tr|A0A151U0F2|A0A151U0F2_CAJCA Putative protease htpX isogeny 2; Found in the gene: LotjaGi1g1v0624100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117142558..117145595) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCCCCTTCTTTCTCCACTCTCTCCCTCTGTCACCATAAACCCACTGCTCCCGCCCTCGGCCGATTACGGTTCGG CGGCGGTTCGACGATCCGGTTCGCGAGGGTCCAGAAGAATCGGAAATTCGGAATCCCGGTCTGCAGAGCGGGTTCCGCCG TCGTCTTCCGGAACCTCGACGCCGACGATTTTCGCCACCCTCTTGACAAACAGGTGTGCTCCAATTTCGCTGTGGCGGAA CACAGCGACGTCGTTTTGGCTTGAATTGAAGTAGCTCTAAGTGCTTCTCTTTCGTTCTTTCTTTTTTGTTTGTTTCGGAA GCGCTAATTCTTGGTTGTTTGTTCTCTTTTATATTTCCAGAATACGTTGATTCTGAGAGCGATTCCGGGGTTGAATGAAC TTGGAAAAGCTCTTCTAGGTAATTGACAAGTGCCTTGTGTACTTAATTGTTCAGTTTATAGTTGGATTGTTAAATTTCTA AATGGATAGATATATATATTTTTTTTTTTAATTTTGTGGGCAGAATAAATAGGAACAGTTGATTGAGTGTTAATTATCAC AAGGATGTAAATATCGAGCTGATATTAGAACTTTTCCTTCATTCTGTCACGAACCAATTATCGCAAAAGCTGTTGTTGGG TAAAAGGACTATGAATGATTTTATATTATATTTCTAACACATCCAATTTGGTTTTGCTGATTACTGAAAAGTAAAACTCA TGCAAATGTGAGTTTGTGCTTTGATTTTTAACATTTGTTAAGCTAATGGAGAGTTTCACTTTTCAGTTTCAATAGCCTTT TTAGTAGAGCCTACAATTTACTTACATGTGAACTTCTAGACTGAAATTATATTTCCCCACTGAAATTACTACTTGTATGT GTGCTTTTAGATCTTGGTAGATATGTTTTTGTGTTGTTGTATGATGTGCATGAATTAAAGATGCATTGCTTTTGTTACCG TCACTCACAAGCACCTTATGTTCAATGATAACTGAAATGCAGGAACTGTAGCGGAGCAGGTCATGCTCCTTGAGAACATC GGGACATCGATACTTGTTTCCAAAAATCAGGTATCCAGGCCATAACACTCATTATGATAAATTTTTCTTCTAGGAGTACT TGATGAACAGTATCATAGGCAAATATGTCGTTTAATAGATAAAATACCTCCTCTGAACAGTTCTCACCTATTAGGGTATG TTTGTCTGAAAGCTTTTGGGGGAAAGGGAAGAGAGGGCAAGGTTTTTAATTTTAAAATAAAAAAGTTATGTAATGTTTTA AAAATAATCAAAAGATTGGGACATTAACTTGCTCCTCTACTTATTACCAACTTGGCAATGGTTCTTCAGATTATATATGA ATGATTTGAACTATCTTCACTTCACATTCCTTCTTTTATCATTTCCACTTAGTTGAGCTGTATGCGACTTGAACCAACAA ATAATTCAATTTACTGTGGAGTTTTGCCACCTAACACCTCATATTAGTAACTAAACTTTTCTTCTTGTTGTGTCAGCTTC CTGATCTTCACCATTTAATAGTTGAAGCTGCAGAAATATTAAATGTTGATGCCCCTGATCTATATGTTCGGCAAAGTCCT GTGCCAAATGCATATACATTAGCTATTAGTGGCAAACGACCATTCGTTGTTGTTCATACTAGCCTTGTGGAGCTTCTGAC AAGAGCCGAGTTGCAGGTTCTAATTTATTTTGTATACATCTTTTTAACTCTCATCCCTGACTGTGTCTATTTTAGCATCC AAGAAGTCCCCCCTATTCTGCCTAGTCCACAACAGATAAGATTTTGAAAGTTGCACTTGGAGATGAATAATTTTTTATAT AGGAACTATTGTATATTATTTACATTCTTCTCTTCCAACTCACCCGATCTATTTGTTAATCTAGTCATTCTTTTTCCATC TTTTCCATTGTTCTAGTTCCAAAATGCTATTAACTTACCATCAGTTTACTTTAACAGGCTGTTTTGGCTCATGAGCTGGG TCATCTAAAATGTGATCATGGTGTGTGGCTTACATATGCAAATATTCTAACCCTTGGAGCCTATACTGTACCTGGTAGGT GATATGGAGCATTTTGTTGTTTTCATTTTCAATGATGTTGTATGCCCATGGTTATATGTTATGCATTTTGGCGAAGTAGT TGGAGGACCATTTTTTGTCAAAGTTGGAGGACCATTTTTTGTCTGATTCCTATGGACTGAACTGTTATGAAATCCATGTC AGTCTTACACTCTTACCACTTATTGAATGTAGCAACCATGAGGACTTGTCTATAAGGCCGTTATTCATATTTTCAAAAAA ATTATTTCTCCTTTGATAGAATAGCTTATATTGATAATGGACATATATCAAACTCTAGCTGTTGCATCTCTTGTTAAATG TTAGATCAAACAGTTTATTCATTGTCTATTCTACTGAATAGTATCATTTGTTGCAGGCATTGGCAGTTTCATAGCTCGGA GTTTGGAAGAGCAGTTGTTCCGCTGGCTTCGGGCAGCTGAGTTGACTTGTGATCGTGCAGCTCTTCTTGTTGCCCAAGAC CCTAAAGTATGCTGATTTCGAATCTAAAGTTTGTTATTGATTGGTTTGATTTTAACTTCTCTATTCTCTTATCTGTTGGT TTTGGTATAACTATAATTAATTTTTTGTTTCCTAATCCTACAAGAGGTTGTCATCTCTGTTCTCATGAAATTAGCTGGGG GATGCCCATCTTTGGCTGATCAATTAAATGTGGATGCGTTCCTGGAGCAAGCACGTTCTTACGAGAAAGCTGCTTCCAGC CCAGTTGGGTGGTATATCAGGTTTGTAGCAACCTGCGTAGGCCACTAGGAATTTGGGTTCCAACTTTTCTCATTTAAAGC CTAAATTTTTTCTGCTGATTAGGAATGCACAAACGAGGCAACTGTCGCATCCTCTGCCAGTTCTACGTGCTAGTGAAATT GATGAATGGTCAAAAAGTCCTGCTTACACATCTCTTTTGAAACTTGGGACAAAGACGAGATCAACACAAAGTGTCTAG
CDS sequence (LotjaGi1g1v0624100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCCTTCTTTCTCCACTCTCTCCCTCTGTCACCATAAACCCACTGCTCCCGCCCTCGGCCGATTACGGTTCGG CGGCGGTTCGACGATCCGGTTCGCGAGGGTCCAGAAGAATCGGAAATTCGGAATCCCGGTCTGCAGAGCGGGTTCCGCCG TCGTCTTCCGGAACCTCGACGCCGACGATTTTCGCCACCCTCTTGACAAACAGAATACGTTGATTCTGAGAGCGATTCCG GGGTTGAATGAACTTGGAAAAGCTCTTCTAGGAACTGTAGCGGAGCAGGTCATGCTCCTTGAGAACATCGGGACATCGAT ACTTGTTTCCAAAAATCAGCTTCCTGATCTTCACCATTTAATAGTTGAAGCTGCAGAAATATTAAATGTTGATGCCCCTG ATCTATATGTTCGGCAAAGTCCTGTGCCAAATGCATATACATTAGCTATTAGTGGCAAACGACCATTCGTTGTTGTTCAT ACTAGCCTTGTGGAGCTTCTGACAAGAGCCGAGTTGCAGGCTGTTTTGGCTCATGAGCTGGGTCATCTAAAATGTGATCA TGGTGTGTGGCTTACATATGCAAATATTCTAACCCTTGGAGCCTATACTGTACCTGGCATTGGCAGTTTCATAGCTCGGA GTTTGGAAGAGCAGTTGTTCCGCTGGCTTCGGGCAGCTGAGTTGACTTGTGATCGTGCAGCTCTTCTTGTTGCCCAAGAC CCTAAAGTTGTCATCTCTGTTCTCATGAAATTAGCTGGGGGATGCCCATCTTTGGCTGATCAATTAAATGTGGATGCGTT CCTGGAGCAAGCACGTTCTTACGAGAAAGCTGCTTCCAGCCCAGTTGGGTGGTATATCAGGAATGCACAAACGAGGCAAC TGTCGCATCCTCTGCCAGTTCTACGTGCTAGTGAAATTGATGAATGGTCAAAAAGTCCTGCTTACACATCTCTTTTGAAA CTTGGGACAAAGACGAGATCAACACAAAGTGTCTAG
Protein sequence (LotjaGi1g1v0624100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPSFSTLSLCHHKPTAPALGRLRFGGGSTIRFARVQKNRKFGIPVCRAGSAVVFRNLDADDFRHPLDKQNTLILRAIP GLNELGKALLGTVAEQVMLLENIGTSILVSKNQLPDLHHLIVEAAEILNVDAPDLYVRQSPVPNAYTLAISGKRPFVVVH TSLVELLTRAELQAVLAHELGHLKCDHGVWLTYANILTLGAYTVPGIGSFIARSLEEQLFRWLRAAELTCDRAALLVAQD PKVVISVLMKLAGGCPSLADQLNVDAFLEQARSYEKAASSPVGWYIRNAQTRQLSHPLPVLRASEIDEWSKSPAYTSLLK LGTKTRSTQSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 34 | 326 | 293 | 1.2E-153 | – | |
PANTHER | 34 | 326 | 293 | 1.2E-153 | ||
CDD | 103 | 308 | 206 | 8.9857E-82 | – | |
Gene3D | 108 | 194 | 87 | 4.0E-15 | – | |
Pfam | 115 | 309 | 195 | 2.0E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
Molecular function | Peptidase activity | Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid. | ||
Biological process | CAAX-box protein processing | The second process in a series of specific posttranslational modifications to the CAAX box region of CAAX box proteins, in which the last three amino acids of the protein (AAX) are removed by proteolysis. |
Expression pattern of LotjaGi1g1v0624100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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