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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0624700 |
| Transcript ID | LotjaGi1g1v0624700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT5G14140.1 nucleic acid binding / zinc ion binding protein; Swiss-Prot: sp|Q7ZZ00|ZN511_DANRE Zinc finger protein 511; TrEMBL-Plants: tr|A0A151TYX4|A0A151TYX4_CAJCA Zinc finger protein 511 family; Found in the gene: LotjaGi1g1v0624700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117206398..117208688) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATGAACTTTTGTTATTGTAAACTTGACAAGAATGGGCTTCAGTGAAGTTCAAACAAACTTCTGAGAACAGAACAA GGCCCAAATACAAATACTAATATCAATTGGGAAAAAAAACAGGGGCAACATTGTCCATTGCTCCTCGTTTCCATTCAAAA TTGAAAACTGCCACTGCCTCCGCTGATCGAAGATGATGGAGGTGGAGAAGCCAAATCTGGAATCAGGGTTTCCCTTCTGG AAACCGCTTCCTCGCATGTTCCCACCCGACTCTCCTTTCTTCGCTCCTGGTAACCTCGAACGAGAGCTTCTTGCTAAACA GGTTCTCTTTTCACAAATCTCAATGTTTGGTGTTCGATGTTTGATTTTGTTTAAGCTTTTCATTTCGAAATTGGAATTTT TACTTACCCTTTTGCATTTCAAAGGTTGCCTTGGAATTTCCAGAAGAAAAGCTAGAGCTTGAGAATTGGATACAAGAAGA AGCTAGGTATTATAAATTTATATATATATATATATATATATTTTGCTTATTCTGACTTATTGTTTTCATATTCTAGTTAA TTTCTTCCGTTTACATTTTTGTGGAAAAATACAAGTTTGTTGATGTTACACTCAAGGGGTTGTTTTTGTCTAAGAGTATG CTTTGTCCATGAAGGTAATGTGTGTGACTCATTTAAGAGTGTGTTATTTTGTTCAGGGAAGTGTTTTGTCCCATTGTCGG TTGTCGAGCGCGGTTGAAATCATTAGAGGACTTTGAAAATCACTATAGTGCAAGGCATCACTCTGCATGCTGTTCTGTGT GTTCCAGAGTCTACCCGACATCGCGTTTGCTCAGCATACATGTATCTGAAGAGCATGATTCTTTCTTTAAGGCAAAAGTT GCGCGTGGCTATGATGTGGTACGTATGTCTAAATAATTCATTGTGGTTTAATGAAACAATCTTTTCTAGTATAGCATCTA TCTTCCACTCCAATTCTTGTTGAATTATCAACTAGTTGAATCTTTATTCCCTTCTCAGTTGTATGATGTTCAATTTTGCC TTCGTTTCTTGAGTAAAGCAACCCTCCAATTTTTTCTTACTTAAATTTATAATCTTACAAATGTCACTAGGAAAACCGTA TTTACAATTTGGTTATTTCAAGCAATGTTTAAAACTTCTTTGTGCCTTCCTTACATGTGTTTTGTCTTTTATTTCCTTTT TAGAGCTTAGAGTCATTGTTTAGGCTGTATGGATAGTAAACCAGGTGAGGACTGAGGAGATGCTCCAATAGCTAGAAATA GATGGAAACTATGGAAACCCCACCTACTGGGAAAAAGCTTTGTTGTTGTTGTTATTGTTGTAATATAGGTTAGCCGGGTT ATTTTTTGTGTACTCATATTTAAATATTTAATATCTTTTTAACATGATCCTTATGTCTTGATCATATAGTATGAATGCTT AGTGGAAGGTTGTGGTTTGAAATTCAAAAGCTACACTAGTAGGAAGCAGCATCTAGTTGACAAGCATGGATTTCCCAAGT CATTTCAGTTTTTCAAGAAGGCTGCACCTTCAAAGAAAGAGAGGCTAAAGACTCAACGCAAACAAGCTGCTCATAAGGAG GATGCTTCTGGAATGATGGAAGTGGAAAATGCAGCCATGGATGACCTTGTTTCAGCAGTCTCTAGATTGAATACTTCGGA CTCCACTCCGTCTTCAATCAGCTTCGGCCGCCGCCCCAAAGGCTTGTCATTTGTCCCTCGATCTGTTCAGCGTGGAAATA GATGAAACCAAACATCATCCATTACAAAGATATAATAAGCTTGTACCTAGAACCAATCTGCATACTTAATTGTTAGATGA TCAATCTTCAGATGCTGCCCTGTTATAAAGTACCTGTTGGTTGTTTTCTGTCCAAAGATTGAAGAAGCTGATAAAGTTGA AGATCATAAAAATAGAGATGTAATAACAGCATACTTTAGTATTATCTTTCTGTGCTTCCACTTGGGCCCCTGTAAGTTGG CCTAAGGCTAATATAGAGTATAGACATTATGCCCGTGCGAGTATATCTGGCTCATGATGTGGAGATTTTGAGCTTCTCTT TAGTATGATATTGTTCTGTAACTTCTGTTAACTTCTCACATGTTTACTGATAGCAACTTTGTGATTAGATGTGAAAACAA TCACTCTTACCGCTTGTCATATGTTTGTCATGGCAAATGAATTTCATGAATTTCAAGTATACAAATGGTGCTGGCTTCCA GTTTAGAAGTACTCTGATTATATTCTTAATTTCGGGCTTATGCTTGCAAGT
CDS sequence (LotjaGi1g1v0624700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGGTGGAGAAGCCAAATCTGGAATCAGGGTTTCCCTTCTGGAAACCGCTTCCTCGCATGTTCCCACCCGACTC TCCTTTCTTCGCTCCTGGTAACCTCGAACGAGAGCTTCTTGCTAAACAGGTTGCCTTGGAATTTCCAGAAGAAAAGCTAG AGCTTGAGAATTGGATACAAGAAGAAGCTAGGGAAGTGTTTTGTCCCATTGTCGGTTGTCGAGCGCGGTTGAAATCATTA GAGGACTTTGAAAATCACTATAGTGCAAGGCATCACTCTGCATGCTGTTCTGTGTGTTCCAGAGTCTACCCGACATCGCG TTTGCTCAGCATACATGTATCTGAAGAGCATGATTCTTTCTTTAAGGCAAAAGTTGCGCGTGGCTATGATGTGTATGAAT GCTTAGTGGAAGGTTGTGGTTTGAAATTCAAAAGCTACACTAGTAGGAAGCAGCATCTAGTTGACAAGCATGGATTTCCC AAGTCATTTCAGTTTTTCAAGAAGGCTGCACCTTCAAAGAAAGAGAGGCTAAAGACTCAACGCAAACAAGCTGCTCATAA GGAGGATGCTTCTGGAATGATGGAAGTGGAAAATGCAGCCATGGATGACCTTGTTTCAGCAGTCTCTAGATTGAATACTT CGGACTCCACTCCGTCTTCAATCAGCTTCGGCCGCCGCCCCAAAGGCTTGTCATTTGTCCCTCGATCTGTTCAGCGTGGA AATAGATGA
Protein sequence (LotjaGi1g1v0624700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEVEKPNLESGFPFWKPLPRMFPPDSPFFAPGNLERELLAKQVALEFPEEKLELENWIQEEAREVFCPIVGCRARLKSL EDFENHYSARHHSACCSVCSRVYPTSRLLSIHVSEEHDSFFKAKVARGYDVYECLVEGCGLKFKSYTSRKQHLVDKHGFP KSFQFFKKAAPSKKERLKTQRKQAAHKEDASGMMEVENAAMDDLVSAVSRLNTSDSTPSSISFGRRPKGLSFVPRSVQRG NR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 236 | 227 | 4.7E-73 | – | |
| PANTHER | 10 | 236 | 227 | 4.7E-73 | ||
| SMART | 66 | 91 | 26 | 1.9 | ||
| SMART | 94 | 117 | 24 | 6.3 | ||
| SMART | 132 | 157 | 26 | 0.033 | ||
| ProSitePatterns | 134 | 157 | 24 | - | ||
| MobiDBLite | 174 | 193 | 20 | - | – | |
| MobiDBLite | 213 | 242 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0624700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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