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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0626400 |
| Transcript ID | LotjaGi1g1v0626400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serpin-like protein; TAIR: AT1G47710.1 Serine protease inhibitor (SERPIN) family protein; Swiss-Prot: sp|Q40066|SPZX_HORVU Serpin-ZX; TrEMBL-Plants: tr|I3S0S8|I3S0S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0626400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117494419..117496885) extracted from Lotus japonicus Gifu genome v1.2.
GAAATAATGAAATAGAAAATCATTATAACCTAGAAAAGGATCCCATGATCCTGAATCGATTCAGTGCCTCTCTCTCTCTC TCTCTCTCTTTCTCTCTCCCTCCCTGCTGCCGTCCGGCGTTCCGTTCGTGTCACGCGCGGCGTCGCCTATTTCCAGTTAC CTCTTCGCTCCAGAGCTGGCTGTGTCGTCTCTCCATCGCCTCATATTCGCCTGGTGAGTGTTCCTATTCTCCCCTTTTTT TCTTCGCATGATTATTTCCTTCTCTGTGTTGTTGTGTCTGTGTGATTTATTACTGTTCTTTTAGTTTGTTGATTGTTGCT GGTTCCTGTTGATTATTACTTGTGCTAGTCATTAATTATTGTTTATTCATGGATTCCTAAAATGTGTCTGATTATTTTGG ACTTAGAAGATGATAATTGAATCCCTTAGGAGCTTTCTTGTGAACTAAGACCATGTTAGAAGACATTTATGAGTTGAACT TGGAATTTTGAACTAATAATATGTTTTTATTCTTTTTCCAATCATCTCTAAACAATGTTAACAAATCTCTAATCAACTAC CGTTAACCCTAATTTTCGCAAACAATTTAAAAGTTTTTTGTAGTACCAACTCAATTAGGATCATGTAAACAATTTTTTTA TTTTAATTAATATGTTTAGTTTTCGAGTTACACTTCAAATAAAACTCTATTTGGATGCAGTCTAGTAGTATTAAACGCAT TTGCTAACTCTCTCCCTCTCTCTTTAGAAGCACATCAAGAACAATGGACCTCAAAGAATCAACCAGCCACCAAAGTGACG TTGCCCTCACCCTCACAAAACATCTATTTTCAAAAGAAGTATATCAGCACGAGAACCTCGTCTTTTCTCCCTTGTCCCTC CATGTTGTTCTTAGCATCATGGCCCCGCTGGTTCAGAAGGCTCCACACTTGATGAGCTTCTTTCCTTCCTTCGATTCGAC TCCACCGACCGTCTCAACTCCTTCACCTCCCAACTTGTATCTGATGTGCTCTATGTGAATGATGCTGCTCCTCCTTCACC TCGCCTTTCTTTTGCCAGTCGTATGTGGGCTGACAAAACGTTGTTTCTTTCCCCTTCCTTCATACAACTTATGGCTACTC ATTACAAGACCTCTTTGGCATCACTTGATTTTAAGAAACAGGTATTATTGCCTTTTCATGAACTAATTAACCTTCTGTCT TCTTTTATTTAAATTCGATATATATTTTTTGTTTAAATGTTTATGTGCTTAATTTTAAAGGGCAGAAAAGTGTGCCGTGT AGTGAATTCTTGGGTCGGAAAAGAGACGGATGGTCTTATTACAGAACTTCTTGATCCTGAATCTGTATCCAATAGCTCAT CCAGACTTATCATTGCTAATGCACTATGCTTCAAAGGTGTGTGGAAACACAAGTTTGATGCTTCAATGACGTATAATCGT GTTTTTTATCTTCTTAATGGCACCTCAATCAGGGTTCCCTTCATGAGCAGCATGAAGGCGGAGCAATTTGTTAGTGTTTT TGATGATTTGAAAGTCCTTCGTCTTTCTTATAAACAAGGTAGAGATAAAAAGCGTCAATTCTCCATGTATATTTTTCTTC CTGAAGCTGAAGATGGTCTTCCAGCTTTAATTGAAAAGGTAGCTTCAGAACCTGGGTTTCTAGAAGACAAACTTCCTAAG CGAAAAGTGAAAGTGCGTGTCTTCATGATTCCAAAATTCAAGATTTCTTTTATGCTTGAAGCTTCTAAAGTGCTGAAAGA GTTGGGAGTGGTTTTGCCTTTCTCTAGATGTGATGCAAATTTTACAAATATGGTAGACTCTCCCTCGGATGAATTTCCCT CGGATGAATTATACATTGATAACATGTTTCATAAAGCTTTCATTGAGGTAAATGAAGAAGGAACTGAAGCTGCAGCGGCT AGTTCTGGGAGATTGGTACGTATGTGTGATTCAGATTCAGTTTCAACTGACACAGACTTTGTAGCTGACCACCCTTTTCT CTTCTTAATCAAAGAAGATCTGAGCGGAACAATCCTCTTTATTGGACGGGTGCTCCATCCAGATGAAGTAGACACACTAG AAGATGAAGACGAAGACGACACACTAGATGAAGACGAAGACGACACAGTAGAGGATGAGGATGACGACATTATTTATTAG CATTATCAATATGATTATTGTATTTTGTGATATTGTCGTTCCTCTTTATTAGTATGCTATGAGCTTTTGATATTTTATTG TCATATCTTAAACATGGTAAATGAAACTTTGGTATTTTAGGTACTGGTCTCTTGACATTAAGTGTCAGACTTAAAGCTAT ATTTCACAAGGTTATTAGAACCGGACCGGTGATCAAACCGGTGAGGGCACTGGTTTAAGGTTCATTGATTCAACCGTAAT TGAACCGTGGTCCGACCGGTATTACCGCTACAAATTAAACAATAGTATTTTTGAAAATTTTATTTTA
CDS sequence (LotjaGi1g1v0626400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTATGTGCTTAATTTTAAAGGGCAGAAAAGTGTGCCGTGTAGTGAATTCTTGGGTCGGAAAAGAGACGGATGGTCT TATTACAGAACTTCTTGATCCTGAATCTGTATCCAATAGCTCATCCAGACTTATCATTGCTAATGCACTATGCTTCAAAG GTGTGTGGAAACACAAGTTTGATGCTTCAATGACGTATAATCGTGTTTTTTATCTTCTTAATGGCACCTCAATCAGGGTT CCCTTCATGAGCAGCATGAAGGCGGAGCAATTTGTTAGTGTTTTTGATGATTTGAAAGTCCTTCGTCTTTCTTATAAACA AGGTAGAGATAAAAAGCGTCAATTCTCCATGTATATTTTTCTTCCTGAAGCTGAAGATGGTCTTCCAGCTTTAATTGAAA AGGTAGCTTCAGAACCTGGGTTTCTAGAAGACAAACTTCCTAAGCGAAAAGTGAAAGTGCGTGTCTTCATGATTCCAAAA TTCAAGATTTCTTTTATGCTTGAAGCTTCTAAAGTGCTGAAAGAGTTGGGAGTGGTTTTGCCTTTCTCTAGATGTGATGC AAATTTTACAAATATGGTAGACTCTCCCTCGGATGAATTTCCCTCGGATGAATTATACATTGATAACATGTTTCATAAAG CTTTCATTGAGGTAAATGAAGAAGGAACTGAAGCTGCAGCGGCTAGTTCTGGGAGATTGGTACGTATGTGTGATTCAGAT TCAGTTTCAACTGACACAGACTTTGTAGCTGACCACCCTTTTCTCTTCTTAATCAAAGAAGATCTGAGCGGAACAATCCT CTTTATTGGACGGGTGCTCCATCCAGATGAAGTAGACACACTAGAAGATGAAGACGAAGACGACACACTAGATGAAGACG AAGACGACACAGTAGAGGATGAGGATGACGACATTATTTATTAG
Protein sequence (LotjaGi1g1v0626400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFMCLILKGRKVCRVVNSWVGKETDGLITELLDPESVSNSSSRLIIANALCFKGVWKHKFDASMTYNRVFYLLNGTSIRV PFMSSMKAEQFVSVFDDLKVLRLSYKQGRDKKRQFSMYIFLPEAEDGLPALIEKVASEPGFLEDKLPKRKVKVRVFMIPK FKISFMLEASKVLKELGVVLPFSRCDANFTNMVDSPSDEFPSDELYIDNMFHKAFIEVNEEGTEAAAASSGRLVRMCDSD SVSTDTDFVADHPFLFLIKEDLSGTILFIGRVLHPDEVDTLEDEDEDDTLDEDEDDTVEDEDDDIIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 275 | 275 | 1.6E-22 | ||
| PANTHER | 10 | 276 | 267 | 3.4E-90 | – | |
| PANTHER | 10 | 276 | 267 | 3.4E-90 | ||
| SUPERFAMILY | 10 | 275 | 266 | 5.89E-71 | ||
| Gene3D | 12 | 220 | 209 | 3.2E-77 | ||
| Pfam | 13 | 275 | 263 | 2.6E-67 | ||
| Gene3D | 56 | 270 | 215 | 3.2E-77 | ||
| ProSitePatterns | 248 | 258 | 11 | - | ||
| MobiDBLite | 278 | 307 | 30 | - | – | |
| MobiDBLite | 279 | 307 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular space | That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid. |
Expression pattern of LotjaGi1g1v0626400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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