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LotjaGi1g1v0626900.1

Overview

Field Value
Gene ID LotjaGi1g1v0626900
Transcript ID LotjaGi1g1v0626900.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT5G13080.1 WRKY DNA-binding protein 75; Swiss-Prot: sp|Q9FYA2|WRK75_ARATH Probable WRKY transcription factor 75; TrEMBL-Plants: tr|I3SNS6|I3SNS6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0626900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:117574922..117578706) extracted from Lotus japonicus Gifu genome v1.2.

GCCGCCCCAAAATTCCACAATATTTAGAATCCTCTTATACCAATCAAACCCACACCCTTGTGTTTCACAAACATTACAAT TAATGTGACAATTTCCGTGTCCTTCACGACACTAGGCCACTGTATAAATACCCCTTTAATTTAATTTGGACTTTCTTATC TCTTTCCTCACATCACATTCGCTGTATATATCCATTATGTGAACCACGCTCACCTTAAGCGCAGCCCCCACCATTTATAT TCTCTCTAGCTTCAATTCTTCTAGTTTTTACCAAAGAAAACTCTTTCTTTCTTCACTCTTCCTATACCTCCTTTTTCTTT CTAGAGCTATCAACAAACACACATATCGGGGTTGGTTTTGTTCATTTCAATGGAGAATAACAATAATTATTCCATGCTGT TTCCTTGTCCTTCTTCTTCCACAAGTGTTGTGGGAAGTTCTCACAATGGTTATAGTGGTTTGAATAATGATCACCAATTT GAGAAGAGAGTGGAAGATGCTAGAGATGGCATATTGTCACAGATTAATGTGAGTGATAACAAAAAGAAAGGGGAGAAAAA GGCTAGAAAGCCAAGATATGCTTTTCAAACGAGGAGCCAAGTTGATATTCTTGATGATGGCTATCGATGGAGGAAATATG GCCAAAAAGCTGTTAAGAACAACAAATTCCCCAGGTATGGTTTTCTCTTGGGGTTGCTTATTAATTCTTCATCTTGTTTT CCAGGGAATGGCGCCTGCTATGTTTGACTTGGTTTATAATATTTACTATTTAATTAATTTGTACAAAGAATTTGACCCCA CCTACCATAAATCTTATTATACCTTTGATTGAACCTGAATTATAAAAAACGAGGTTATGTTGAATTTATGATTAATCTAG AAGTATTGGTTGAATTGTTTTGTTGGGATTGTTAATTAGCTGAGGATATATATATGTACACCAACCAAGAAATGAAGATC TTTGCTTGAACCTATATTTTTGTTTCCTTTACTGGGGGCTTTCTTCTTCATTATCTATACCTCACCATCTTATCAGTCTG TCTTCTAGTGTGCTGATGACATGCATGTGTGTACGGTCAAGTCAAAAGAAAAAGAATATAGAACTTAGAATAAACCACAT GTATGCATCCATCCCTGCGTGCACGCAATATGCATGTATAATCTTATCTTATTTATAGCAGCACATATATACATCCAATA TAATGACGGAGAGCCCCCTCTGAACCCTGCAAGGGGTCTATACAAGATTACAGAATATATTGGTGTTGCTAAAGTGTGAT TGTGGTTAGTTATGTCATCATCTTAAATAGGAAAATGTTTGGAAATTTTGTCTTGTTTTTGATTAATAATCTAATCCAAA TTCGAAAGAACTATATGGTGGATGTTAATCAATGAAGAAACATGAAGTTTTGCCTGCGAGTGAATGCTCAATTTTGAAAA TGTTTCGGACAAGTTATTTCATAAAAGAAGAAAATAACTTTTGCATTTTTAATTTTGTCAAATATCGGTCAAGTTAATTA GTCAGTGCGGTTAGATAAAACTTCAATCAAGTTGGTCTAACTAACCGACATTTGACATGATTGAGAACCACAAATATATT TCATTCTTCTATGATTAATTGGTCCAATGCTTACACTTTGAGAGGAAATTGAGTTTGTCTGCATATATGTAGAGTACCGG GATGATGATTTCATGTCATTTAAATGGCTGATTTCCTCCATATATCATTAATTCAGTATAGGATAACTTTGAATTGTGTT ATATATGCGTGATTTATTTTTGTTTCGGTTTGATTATTTGCTTTCTAATTTTTTAATTGCATATTTTTCTTATATTCATG TAAAAGCAGTGGCGGAGCCACGTTAGGGCAGGGGAGGGCCTTGGCCCTCCCAAGGTTCAATAATGTTGTTTATACATATA TTATAATACTGCATTGATTATTAGATGCATTAGCCTAATGGCGGTATCGTTTCCTAGGTACCTGTTGTAGTGGGTTCAAT CCACTCCTACACTATTTTTTAGTAATATTCATAAATGTTTCATTTTTTTACACACACTACTTATTTTCTCACCTATTTTG TAAAATTTGTTTGAGCCTTAATGGATATTATTACTATAATTAGAGCAAAAATTAAAATAATCATATCTTTTTTCTTTCAA TAAAAACATGAGTGTTGGAAATATAATAGTCCTAGACCATTTTTTTACAAGAGGAATGCTAATAGTTTTAGAGCACAAAG TTAATATATAAAATTTTCTCAAATAACTAATAATCAAGAGTAAAAGAATAATATATTTTTTCCAATAGAAACACTTTTGA GAATGATAAATCAAAAAAAGCTAATGTAAAAATAATCAGAGATTAAAAAAACTGAAAAAAATGAAAAAGAAATCTTTTTA GCATTATTAATATAACTTATAATACATTTTCAATGAGTATATAAAGTAGTTTAATTTTTATTTTTTTTGTGTATATTGGT GTTTATTGCAAATTAAAAAATGTAATTTATTTTTAAATTTTATTTTGTCCCCTCATACTATTTTTAATGGATACTATTAC TATAATTAGAGCAAAAATTAAAACAATCATATCTTTTTCCTTTGCATAAAAACATGAGTGTTGGAAATATAATAGTCCTA GACCATTTTTTACAAGAGGAATGCTAATAGTTTTAGAGTACAAAATTAATATATAAAATTTTCTCAAAAAATTAATAATC AAGAGTAAAAGAATAATTTATTTTTTCCAATAGAAACACTTTTGAGAATGATAAATAAAAAAAGCTAATGTAACAATAAC CAGAGATTAAAAAAACTGAAAAAGAAATCTTTTTAGCATTATTAATATAACTTATAATACATTTTCAATGAGTATAAAAA GTAGTTTAATTTTTTTTGTGTGTTTGTTGGTGTTTATTGCAAATTAAAAACTTTAATTTATTTTTAAATTTTATTTTGAC CACCTAGCTTATACTATTTTTCCTGGTTTCGCCACTGTGTAAAAGCCCATATATTGAACATGACATTGGTCTTCAACGTC AACAAATGGTTGTCACTCTTCTTCATGTTGAGCACGTGGTGTTGTTAATGTGGAGTCAAAAAAGACATGCATGGATATTA TTATTGACCCATTGGTTTTATTAATTTGCAGGAGCTACTACAGGTGCACGCATCACGGGTGCAATGTGAAGAAGCAAGTG CAACGCCTAACCAAAGACGAAGGGGTAGTGGTGACAACTTATGAAGGAGTGCACACTCACCCAATTGAGAAGACAACTGA TAACTTTGAACACATTTTGAATCAGATGCAAATATACACTCCATTTTGAATCAAAGAAACTGGCACATATATGATATATG AATTTTCTTCTGCCAGTTAGAACAATTAATATATATTCAGTGTCTTCTTCTAGTTGTAGTTCTTCCTTTGATACAAAAAT AAAATTGTGTCAGCACATGCGTAATCTAGTTTACGTACGTGAACTCTTCTTATTATTAGACAATCTTCTCTGTTCTTTTA TTATTGGAGTATTAGCTTATGTAAATTCAGCTGTACTTCATGCTGCAGATACACACAGGTCAATATCCTTTAATTTATTC CTTTTTTTTATGGATGGTTATTCTATATTTTTTTTTAAAGCAAAATATATTGATAGATAGTATTGAGAAATATCACCTCT CAACATGGATAAAATTACCAACAAAGCAATATAACTTGTAGAAACTAAGTAAACAGGTTTTGCGTCGAGATCATATACTT GTAGCAGTTGAAGAAGCAATTAATT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0626900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAATAACAATAATTATTCCATGCTGTTTCCTTGTCCTTCTTCTTCCACAAGTGTTGTGGGAAGTTCTCACAATGG TTATAGTGGTTTGAATAATGATCACCAATTTGAGAAGAGAGTGGAAGATGCTAGAGATGGCATATTGTCACAGATTAATG TGAGTGATAACAAAAAGAAAGGGGAGAAAAAGGCTAGAAAGCCAAGATATGCTTTTCAAACGAGGAGCCAAGTTGATATT CTTGATGATGGCTATCGATGGAGGAAATATGGCCAAAAAGCTGTTAAGAACAACAAATTCCCCAGGAGCTACTACAGGTG CACGCATCACGGGTGCAATGTGAAGAAGCAAGTGCAACGCCTAACCAAAGACGAAGGGGTAGTGGTGACAACTTATGAAG GAGTGCACACTCACCCAATTGAGAAGACAACTGATAACTTTGAACACATTTTGAATCAGATGCAAATATACACTCCATTT TGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0626900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENNNNYSMLFPCPSSSTSVVGSSHNGYSGLNNDHQFEKRVEDARDGILSQINVSDNKKKGEKKARKPRYAFQTRSQVDI LDDGYRWRKYGQKAVKNNKFPRSYYRCTHHGCNVKKQVQRLTKDEGVVVTTYEGVHTHPIEKTTDNFEHILNQMQIYTPF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31221
38 160 123 1.1E-75 –
PANTHER
PTHR31221:SF120
38 160 123 1.1E-75 –
Gene3D
G3DSA:2.20.25.80
61 141 81 3.7E-33
IPR036576
SUPERFAMILY
SSF118290
73 140 68 7.72E-30
IPR036576
ProSiteProfiles
PS50811
76 141 66 29.585
IPR003657
SMART
SM00774
81 140 60 5.1E-39
IPR003657
Pfam
PF03106
82 139 58 1.6E-26
IPR003657

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0626900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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