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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0627500 |
| Transcript ID | LotjaGi1g1v0627500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bifunctional uridylyltransferase/uridylyl-removing enzyme; TAIR: AT3G01990.5 ACT domain repeat 6; Swiss-Prot: sp|Q9SGA0|ACR6_ARATH ACT domain-containing protein ACR6; TrEMBL-Plants: tr|I1MLF4|I1MLF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0627500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117705083..117707826) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTGGTGTTGTTGTTTGGTCTAATTTGGTATGATGCCACGCAGGGTTGTAATTGACAACAATGCCTGTGAAAACGCCA CTGTTATTAAGGTAAAGTCGGACCTTTTCTCTGTTTAGGTTCAACAAAATTGTCCACACATTAATAAAGATTCTTTCTTA TACCTTTTTTCTGAGTTAATTTCTATAAAAAATGTTTTTCTTACTAGTTACCATTCACTTTTTCAGGTTGATAGTTTCAA CAAACATGGGATTCTCCTCGATGTTGTTCAGGTTCTTTCAGATATGAACCTTGTAATTAATAAGGCCTACATCTCCTCTG ATGGGGTGTGGTTCATGGATGGTAAATTCCTTTCTTCTCCAGTGGTAGGCTTTTTAGGGGTTAGGGGTGGGGTGTTAGAA ACTTAAAATTATTCTTTCTATTATTGTTGTTATTATCTTTGCTTCTAATCCTAGTATTGTTTTTTTTTTCAGTGTTTAAT GTTACTGATCATAATGGAAACAAGATCAAAGACAAGGAAATCATTGATTATATTCAGAGGGTAAGAAATCATATATTTAT AGTTCTAAGAATGCTCTAATTGACGCTTATTTTTGTTGCTGCTATCTTTGTCTTCTTCTTTCTTCCCTGTCAAATAACCA GGATACATGAATGGTTTTATATTATATTTCTAACATTCCCCTTTGCTAGAAGTCCTCAAGTTAAACTTAAATATTAAACA GGACACTTGTATTAGAATATGCTGCTTTGAATTTGATTCTTTTGACAACACAATGATGTGAATTATAACATCCTTTTACA CTCATTTTCCAAGTTGCTGATTGTATGATCTTGCTATGAATTGGTTTGCCAAAGTGGAACAAAGGAAGAGCTCATATTCA TTCATAATTGATGTTCACTTTCCATTTTTCAATGATTTTTTATTTCATCTATCGAAATTCTATTGGTTCCTGTATTTGAA CTGCATGTACTGGAAGATCTTGTGTTCTCGCTGTCATACCGATTTAAGTAGTTAACATACAATGATAGAAAACAAACTTA AAATCCTTGAAGAAATTCGAAGTTTCAGAAATTGTGAAGTTTTGAACCTCGAGATAGCACACCTTAGTTCGGGTGAGACT AACCCTGATGGTCCATCTTCAAGAAATGTGAGATTTCTGAATCTGTCATTTTTCGCATTACATCATGATGCCAAATTTAG GTTCACTAAGATATAATTATCTTCTTTGTTTGTGTGTGATCCGTGAATTTGATACAGTGAACTTTTGCTAATAATAAATA GCTCCTTGATGACACTGTCAAAATATCTTCTAGTTTCTGATTTTCTTTCTTTCTAATTTTATAGAAACTTGAAAACAATC CCAGCTTTGCTCCCTCCTCACTGAGAGAGTCTGTTGGGGTTGTACCTACTGAAGAGCACACGGTAATTGAACTCACTGGC ACGGACAGGCCTGGTTTACTATCTGAAATCTGTGCAGTTCTCAGAGACCTTCACTGTAATGTGGTCACTGCTGAGATATG GACACACAATACTAGGGCTGCTGCTGTAGTTCATGTGACAGATGATTCCAGTGGGTGTGCCATTGAGGACCCTTCACGCC TCAATACAATAAGTAATTTGCTTTGTAATGTCCTTAGGGGGAGTGCTGATCCGAAGGCAGCAAGAGCAACTGGAGTTACT CACAGGGACAGAAGATTACATCAGATTATGTTTGCTGACAGGGACTATGAAAGGGTTGAAAGAGCAGGACAAGGAGGAGT CAGGGAGAGAGATAAAAGTCTGTCCCCACATGTGACCATTTTAGATTGTATTCAGAAAGATTACACTGTGATCACCATGA GAGCAAAAGATCGGCCGAAATTGCTGTTCGACATTGTTTGCACTTTAACCGACATGCAGTATGTAGTTTTTCATGGTCTT GTCCAGACATTAAGGACAGAAGCTTTTCAGGTTAGCCAAAATTTTATTGTGTGATGTTCGGAAATGATGGTTTACCTCTT TAGCTTGGTTTGCAGTACTTCTTGTTGTCTGAAGCTAAACTTGATATTAATGTTTATGGCTATAATTATTTGATCAATTG AATTTTCCATGAATTTATATGATTATCATATATATATATTCAAACCTATGTTTAGCTTTCTGAGTTTCATTTGGTCAGCT GGGATTGATCTACCTAGTTTAGGCAAAAACTGATTAGCATTTTGATTGTTATGTAGGAGTTTTTTATTCGGCATGTTGAT GGCTTTCCCATAAGCTCAGAGGCAGAGAGAGAACGGCTTGCACAGTGTCTTGAAGCAGCAATTGAAAGGAGGGCATCTGA GGTTATTATTAGTAACCCAGCTAGAAAGTTCCCTCTTCCCTTCTTTTGTTCCGTGCTTTGCTAAGATATGTATTGTATGC AGGGAATGGAGCTGGAATTGTGCACAGAAGATCGCGTAGGACTCCTCTCAGATATCACAAGGATATTCCGGGAGAACAGT TTATGCATCAAAAGAGCAGAAATATCAACAGAAAATGGAAAGGCAAAAGACACTTTCTACGTCACAGATGTGACTGGTAA CCCGGTTGACCCCAAGATTATTGACTCGGTTCGTAGAGAAATTGGCGACACAGTACTGCAGGTGAAACACAACTCTAGCC TTTCACCAAAGACCCCACAAGCAACAACAATTGGGGTTCTCTTTGGAAGTTTCTTCAAAGCTCGATCTTTTCAGAATTTT AAGTTGATCAGATCTTATTCTTAA
CDS sequence (LotjaGi1g1v0627500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCCACGCAGGGTTGTAATTGACAACAATGCCTGTGAAAACGCCACTGTTATTAAGGTTGATAGTTTCAACAAACA TGGGATTCTCCTCGATGTTGTTCAGGTTCTTTCAGATATGAACCTTGTAATTAATAAGGCCTACATCTCCTCTGATGGGG TGTGGTTCATGGATGTGTTTAATGTTACTGATCATAATGGAAACAAGATCAAAGACAAGGAAATCATTGATTATATTCAG AGGAAACTTGAAAACAATCCCAGCTTTGCTCCCTCCTCACTGAGAGAGTCTGTTGGGGTTGTACCTACTGAAGAGCACAC GGTAATTGAACTCACTGGCACGGACAGGCCTGGTTTACTATCTGAAATCTGTGCAGTTCTCAGAGACCTTCACTGTAATG TGGTCACTGCTGAGATATGGACACACAATACTAGGGCTGCTGCTGTAGTTCATGTGACAGATGATTCCAGTGGGTGTGCC ATTGAGGACCCTTCACGCCTCAATACAATAAGTAATTTGCTTTGTAATGTCCTTAGGGGGAGTGCTGATCCGAAGGCAGC AAGAGCAACTGGAGTTACTCACAGGGACAGAAGATTACATCAGATTATGTTTGCTGACAGGGACTATGAAAGGGTTGAAA GAGCAGGACAAGGAGGAGTCAGGGAGAGAGATAAAAGTCTGTCCCCACATGTGACCATTTTAGATTGTATTCAGAAAGAT TACACTGTGATCACCATGAGAGCAAAAGATCGGCCGAAATTGCTGTTCGACATTGTTTGCACTTTAACCGACATGCAGTA TGTAGTTTTTCATGGTCTTGTCCAGACATTAAGGACAGAAGCTTTTCAGGAGTTTTTTATTCGGCATGTTGATGGCTTTC CCATAAGCTCAGAGGCAGAGAGAGAACGGCTTGCACAGTGTCTTGAAGCAGCAATTGAAAGGAGGGCATCTGAGGGAATG GAGCTGGAATTGTGCACAGAAGATCGCGTAGGACTCCTCTCAGATATCACAAGGATATTCCGGGAGAACAGTTTATGCAT CAAAAGAGCAGAAATATCAACAGAAAATGGAAAGGCAAAAGACACTTTCTACGTCACAGATGTGACTGGTAACCCGGTTG ACCCCAAGATTATTGACTCGGTTCGTAGAGAAATTGGCGACACAGTACTGCAGGTGAAACACAACTCTAGCCTTTCACCA AAGACCCCACAAGCAACAACAATTGGGGTTCTCTTTGGAAGTTTCTTCAAAGCTCGATCTTTTCAGAATTTTAAGTTGAT CAGATCTTATTCTTAA
Protein sequence (LotjaGi1g1v0627500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMPRRVVIDNNACENATVIKVDSFNKHGILLDVVQVLSDMNLVINKAYISSDGVWFMDVFNVTDHNGNKIKDKEIIDYIQ RKLENNPSFAPSSLRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLRDLHCNVVTAEIWTHNTRAAAVVHVTDDSSGCA IEDPSRLNTISNLLCNVLRGSADPKAARATGVTHRDRRLHQIMFADRDYERVERAGQGGVRERDKSLSPHVTILDCIQKD YTVITMRAKDRPKLLFDIVCTLTDMQYVVFHGLVQTLRTEAFQEFFIRHVDGFPISSEAERERLAQCLEAAIERRASEGM ELELCTEDRVGLLSDITRIFRENSLCIKRAEISTENGKAKDTFYVTDVTGNPVDPKIIDSVRREIGDTVLQVKHNSSLSP KTPQATTIGVLFGSFFKARSFQNFKLIRSYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 429 | 429 | 1.2E-216 | – | |
| PANTHER | 1 | 429 | 429 | 1.2E-216 | ||
| SUPERFAMILY | 13 | 83 | 71 | 9.67E-11 | – | |
| ProSiteProfiles | 18 | 97 | 80 | 9.361 | ||
| SUPERFAMILY | 102 | 161 | 60 | 3.31E-15 | – | |
| Gene3D | 102 | 178 | 77 | 2.3E-11 | – | |
| CDD | 107 | 180 | 74 | 7.58937E-35 | – | |
| Pfam | 107 | 156 | 50 | 1.3E-8 | ||
| ProSiteProfiles | 108 | 189 | 82 | 10.57 | ||
| CDD | 241 | 315 | 75 | 2.88874E-36 | – | |
| SUPERFAMILY | 317 | 386 | 70 | 2.36E-10 | – | |
| CDD | 319 | 390 | 72 | 1.61989E-36 | – | |
| Gene3D | 320 | 398 | 79 | 4.7E-9 | – | |
| ProSiteProfiles | 321 | 400 | 80 | 12.979 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0627500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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