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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0629300 |
Transcript ID | LotjaGi1g1v0629300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein; TAIR: AT5G13180.1 NAC domain containing protein 83; Swiss-Prot: sp|Q9FY93|NAC83_ARATH NAC domain-containing protein 83; TrEMBL-Plants: tr|A0A151SM40|A0A151SM40_CAJCA NAC domain-containing protein 7; Found in the gene: LotjaGi1g1v0629300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118038604..118040013) extracted from Lotus japonicus Gifu genome v1.2.
GATTCCAGATTTCCTTCTATATTAGAGTTATAATGCTCCCTTATTTCCCTGGGCTCTCCCATTCTCTCACTACTTCCTAC CCCTCCCTCTCTCTCTTGGGTCTCATTAACCCACAAACTAACCCAGAGCATTAACTACACACTGCATGTCCTGTAGCTAT AAATTGACCATGGGTTTCATGTAGCAATCCACCCAAATAGTTGAGACCATTAAGCAAGCCCCTACTTCTTCTCTCTTGAG CGATGGAGAACCATTTGAATCCCAGGTTGCCAGTTGGGTACAGGTTTGACCCCACTGATGATGTTCTGGTTGATGCCTAC CTCAAGAGAAAGATCTTTTCTCAGCCTCTTCCTGTTGATGTCGTCCCAGAACTTGATGTGTTTCAAGTTGAGCCTTGGAG GCTGCCAAAGGGAGGTAAAGAAAACAAAATTCTCTGTTTTTCTGGCGTTTTTTCTATCCCAGTTGATCAGCATTGTGTTC TGTCATAAAAATAAATCAATTTTTACATCGCCCATGAAATGTTCATGTCCTGTTTTGAATTGGGTACTTTTTTTTCTGAT TTGGTTAGCTTTGTTTATTTGTATTTGCAGATGAGAAGATTTTCACTGATCGCCAGTATTTCTGGTTCAACACTAGGGGG CGTGACCTTGAAAGCCAGGACTGGAGAGTCGCTGGGAATGGCCAGTGGAGGATGTCTAAGAAAGGAAAAGATGTTCCGAT CCCGGGAGACAACCAGCTGATCGGGAAGAAGAACACCTTGATTTTCTGGAAGGAGCAGGGAGCCGCCGCTGCTAAGGAGA CCAAATGGGTGATGCATGAGTTTCGCCTCGAGATAATAGCTAGCCCCACAAGGGTAATGAAAGAATAGAACAGTAACTAT TTTTTTTTTTTTTTGAAAATTGAGCAGAGATTTGCAGTAATATTGTCTTCTGAATTTTAAATTTTCATGAGAATGGTAGG TAGGATCAATGATCATTATCAAAGTTGTTTTCTTTTGTCTTACTCATCATATATCAGTATCTGATCACCTGAACTTTGTA ATTCAAAATGCAGATGTCGCATTTGGCGATGTATCGGATATTCCAGAAGAAAGGTGTGAAGAAGGTGAGGCACGGCCCGC ACAGGAGAGGTGGCAGGAATGCTGCGATCGGTGGCATGAATTCAGGCAGTACTGCTGATGTCATTGATTTGAATGAAGAG AGTGGCAGTTTCTCAGGTCCTCCCCCAATGACCCCTTCCTTGAGCGAGGGCAGTGATTCCGGAGAGAATTATATTAGGAG TTGGTAGAACCCAAACAAGCTTATCTTGTTTGGTTTTAGTTTCTAGTTGCAGGAAATGTGAAATAGGATTGGGTTTGTCT TTAAGAATTGGAAATAATCGCAACTATTTATGTTTTACCTGTTCCCTTAA
CDS sequence (LotjaGi1g1v0629300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACCATTTGAATCCCAGGTTGCCAGTTGGGTACAGGTTTGACCCCACTGATGATGTTCTGGTTGATGCCTACCT CAAGAGAAAGATCTTTTCTCAGCCTCTTCCTGTTGATGTCGTCCCAGAACTTGATGTGTTTCAAGTTGAGCCTTGGAGGC TGCCAAAGGGAGATGAGAAGATTTTCACTGATCGCCAGTATTTCTGGTTCAACACTAGGGGGCGTGACCTTGAAAGCCAG GACTGGAGAGTCGCTGGGAATGGCCAGTGGAGGATGTCTAAGAAAGGAAAAGATGTTCCGATCCCGGGAGACAACCAGCT GATCGGGAAGAAGAACACCTTGATTTTCTGGAAGGAGCAGGGAGCCGCCGCTGCTAAGGAGACCAAATGGGTGATGCATG AGTTTCGCCTCGAGATAATAGCTAGCCCCACAAGGATGTCGCATTTGGCGATGTATCGGATATTCCAGAAGAAAGGTGTG AAGAAGGTGAGGCACGGCCCGCACAGGAGAGGTGGCAGGAATGCTGCGATCGGTGGCATGAATTCAGGCAGTACTGCTGA TGTCATTGATTTGAATGAAGAGAGTGGCAGTTTCTCAGGTCCTCCCCCAATGACCCCTTCCTTGAGCGAGGGCAGTGATT CCGGAGAGAATTATATTAGGAGTTGGTAG
Protein sequence (LotjaGi1g1v0629300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENHLNPRLPVGYRFDPTDDVLVDAYLKRKIFSQPLPVDVVPELDVFQVEPWRLPKGDEKIFTDRQYFWFNTRGRDLESQ DWRVAGNGQWRMSKKGKDVPIPGDNQLIGKKNTLIFWKEQGAAAAKETKWVMHEFRLEIIASPTRMSHLAMYRIFQKKGV KKVRHGPHRRGGRNAAIGGMNSGSTADVIDLNEESGSFSGPPPMTPSLSEGSDSGENYIRSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 6 | 214 | 209 | 1.3E-43 | – | |
PANTHER | 6 | 214 | 209 | 1.3E-43 | – | |
SUPERFAMILY | 6 | 157 | 152 | 7.72E-33 | ||
ProSiteProfiles | 9 | 157 | 149 | 36.215 | ||
Pfam | 10 | 137 | 128 | 3.8E-22 | ||
Gene3D | 18 | 162 | 145 | 1.2E-29 | ||
MobiDBLite | 164 | 222 | 59 | - | – | |
MobiDBLite | 178 | 222 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0629300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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