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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0630500 |
| Transcript ID | LotjaGi1g1v0630500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT1G33530.1 F-box family protein; Swiss-Prot: sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530; TrEMBL-Plants: tr|K7KW05|K7KW05_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0630500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118371028..118372420) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGAAGCAAGAAAGAGCGGTAGAAAGAAGAAAGAAAGAAGCAAGAAACCATGGACGACGAACCTAGGCATCGAAACAG TGTAGCTTCGCAAGAATCAAGCAGGAAAGCAAGCATGAGGAGGAGTAACTCCACCTTGCCTACGGAGCTCCCCACCTTGC CTATGGAGCTGGTGAATGAAGAGATTCTCTTGCGTTTGCCTGTGAAGTCCTTACTGCGTTTCAAAGCGGTGAATCGTGAA TGGGGAGGTTTGATTTCAAGTTCCGATTTCGCCAAAGCCCATTTCGATTCTCGGTACCCACACACCCACCGAGTTCGACT TGAGGGTCTACCTCCCCCTCCTGTTCCTATTGAACGCATTGATGAATTGGCAGCACCGTTTATTGGTTTTGATATGTCTG CACCATTATTTGATGAAGCTTCTCTGTTGCGCATTCCTCTGCCAAACTTCAAGTCGTTTGAGTGGGGTACATGCAGAGGC TTTGTTGGTTGGACCGACTGGGATGACGAGGTTGTGATTATCTTGAACCCAGCAACGGGCAATCGCAGACGAATCGCTTG GGTCTACGCAGATCATCATCAACCCCGAAGACCACCTGCAGGTAAAATTTCATTAGTACGCGATAAGGTCTTAAGGGGAA TTGGTTATGATGACATACAAGAAGATTACTTGATAATTCAAGTTGAGTGTCATATTCCTCGAGTTAATGTTTTCTCATTG GCAACTAATTCATCTGGTTACATTCTTGATTTTGGTGTTGGTATCGGAGGATACGAGCCATTGGGTGATGATTATGCCGT TGGGGTATTTGCTAACAAAGGTCTGCATTGGTTAGTGAGGAAGACGGATACAAATCAAATCATAATACTTTTCTTTCATT TACCATCTAGGACATTGACTGAAACTGAGGTGCCAACATTTATGCAAGTGGAAGAGGGTGGAGTTCGAGGGAATAAAAAG TATTTTCTGAGTTTAATTGGAAGTTCGCTTGGTTTGGTTTATGAAAGTGGTCAGGGTCCCCGTGGATGTGCTAAGATATG GGTCATGGATAATGCAAACGCTTGGATTGAACTTGTTAATCTTCCTCTTCAGGACTATAATTGGAACTTTATCCCGCTCT GTGTTACTACAAACGGTAGTATTTTGGGTTCACATCGTGATGGGCTCCTAATGAAGTTTTGTGACGAAGGAGCTCAGCTT GAGACACGTCAATGGGGGAGAAGTTATGACCTTTTAACCCATTACGGAATCTACAAAGAGAGCTTGCTGTCGCTCCCTGG TCGTGACGTTGCTAGAATTTAGTTTTGATATTCGAATTTGTTGACTGACCAACTGTAAATGAAACCAATAGGCAATAGCT TGGTTTTCATGTGAAAGTGATGATATGTCAAAC
CDS sequence (LotjaGi1g1v0630500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACGACGAACCTAGGCATCGAAACAGTGTAGCTTCGCAAGAATCAAGCAGGAAAGCAAGCATGAGGAGGAGTAACTC CACCTTGCCTACGGAGCTCCCCACCTTGCCTATGGAGCTGGTGAATGAAGAGATTCTCTTGCGTTTGCCTGTGAAGTCCT TACTGCGTTTCAAAGCGGTGAATCGTGAATGGGGAGGTTTGATTTCAAGTTCCGATTTCGCCAAAGCCCATTTCGATTCT CGGTACCCACACACCCACCGAGTTCGACTTGAGGGTCTACCTCCCCCTCCTGTTCCTATTGAACGCATTGATGAATTGGC AGCACCGTTTATTGGTTTTGATATGTCTGCACCATTATTTGATGAAGCTTCTCTGTTGCGCATTCCTCTGCCAAACTTCA AGTCGTTTGAGTGGGGTACATGCAGAGGCTTTGTTGGTTGGACCGACTGGGATGACGAGGTTGTGATTATCTTGAACCCA GCAACGGGCAATCGCAGACGAATCGCTTGGGTCTACGCAGATCATCATCAACCCCGAAGACCACCTGCAGGTAAAATTTC ATTAGTACGCGATAAGGTCTTAAGGGGAATTGGTTATGATGACATACAAGAAGATTACTTGATAATTCAAGTTGAGTGTC ATATTCCTCGAGTTAATGTTTTCTCATTGGCAACTAATTCATCTGGTTACATTCTTGATTTTGGTGTTGGTATCGGAGGA TACGAGCCATTGGGTGATGATTATGCCGTTGGGGTATTTGCTAACAAAGGTCTGCATTGGTTAGTGAGGAAGACGGATAC AAATCAAATCATAATACTTTTCTTTCATTTACCATCTAGGACATTGACTGAAACTGAGGTGCCAACATTTATGCAAGTGG AAGAGGGTGGAGTTCGAGGGAATAAAAAGTATTTTCTGAGTTTAATTGGAAGTTCGCTTGGTTTGGTTTATGAAAGTGGT CAGGGTCCCCGTGGATGTGCTAAGATATGGGTCATGGATAATGCAAACGCTTGGATTGAACTTGTTAATCTTCCTCTTCA GGACTATAATTGGAACTTTATCCCGCTCTGTGTTACTACAAACGGTAGTATTTTGGGTTCACATCGTGATGGGCTCCTAA TGAAGTTTTGTGACGAAGGAGCTCAGCTTGAGACACGTCAATGGGGGAGAAGTTATGACCTTTTAACCCATTACGGAATC TACAAAGAGAGCTTGCTGTCGCTCCCTGGTCGTGACGTTGCTAGAATTTAG
Protein sequence (LotjaGi1g1v0630500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDEPRHRNSVASQESSRKASMRRSNSTLPTELPTLPMELVNEEILLRLPVKSLLRFKAVNREWGGLISSSDFAKAHFDS RYPHTHRVRLEGLPPPPVPIERIDELAAPFIGFDMSAPLFDEASLLRIPLPNFKSFEWGTCRGFVGWTDWDDEVVIILNP ATGNRRRIAWVYADHHQPRRPPAGKISLVRDKVLRGIGYDDIQEDYLIIQVECHIPRVNVFSLATNSSGYILDFGVGIGG YEPLGDDYAVGVFANKGLHWLVRKTDTNQIIILFFHLPSRTLTETEVPTFMQVEEGGVRGNKKYFLSLIGSSLGLVYESG QGPRGCAKIWVMDNANAWIELVNLPLQDYNWNFIPLCVTTNGSILGSHRDGLLMKFCDEGAQLETRQWGRSYDLLTHYGI YKESLLSLPGRDVARI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 32 | 32 | - | – | |
| MobiDBLite | 14 | 32 | 19 | - | – | |
| PANTHER | 33 | 404 | 372 | 2.2E-37 | – | |
| PANTHER | 33 | 404 | 372 | 2.2E-37 | – | |
| SUPERFAMILY | 33 | 83 | 51 | 1.05E-10 | ||
| SMART | 36 | 77 | 42 | 0.0061 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0630500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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