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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0630700 |
| Transcript ID | LotjaGi1g1v0630700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151TE58|A0A151TE58_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0630700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118419100..118422803) extracted from Lotus japonicus Gifu genome v1.2.
TTCCATGTTAACTAGAGGTTCCCCATGCAAGAGATCAAATGAGGTTTGGGTGGTTTTCACAAATTTGAGCTTTCCAAACC TCTGAGCCTCTTGCTTTCAACCCCAACTCCTTTCCCACCAACCACGTCCTTCTGGCTCGAGTTGTGACCCCATCCTCTCC CTGTACTAGTTCTAAAAATAGGTTGTTATTCCACATCAAAATACTGTTTATAATTTCCAACACATTAAAGTTTCAGAGTT ATTCACAAAGACCACATCACAGAAACTATGAACAGCCCAGAAAGGGCAAGGGTAACAACCAAGAGTTACCAGAATGACTA ATACTGACCAGATCCCAAACAAATCAAGCCAGACATATGAGGGTCACGCTTGAGGTATGCAAATCTTTTGATTCGCTTGG GTGTTTGTTCCCTTGTGCAGGTGGTTTGTCGTGATTGCAGGGGCACAAATGGTGAATTGCAGCCTATTTGAAAGAATGGT GGGATGGCTAGTATAATGGCATGTCATAAAGTATGCATAAAGGAAGGGGCTGTAGAAAGCTAGTAGATTAGCTTCATGCG TGTATTCTGAATTTGGAGCTAAACATTTGTTATGTAATATTGTTTTTTTCTAGAGGAAGGGTGGGGTTTTGTCTGTGTGT ATTTTTGGCCTCTTTGAGAATTGAACACTCTTTTTTCCTTCATTAGGTTTTTATCCTACTGGGTTTTTCCTAATAAGATT TTATTGAAACTCATTCTCAAAGATCTCTAATGGCCATAGTGGAGGGTTTCATATGTTTTGAGGCAATGTTTCTGGACCGG TGATCTCTTTGCTCCCTTTGAGGCTTTTTAATATATATTTGATTCAGCTTTCAAATAAAAAACAAATAGAAACAGATATG GTGACAAGCTATGAAAGTTATCATTAGCACCATAGATAAGAGAAATGGAACAGAGCCAAGAAACATTAAATTTCTAAGGT AGTGTTTGGCCAGTTTTTTTTTTACTTTTAAGTTACTTTTAAGATAAGTTAGGTCAAACATAATTTTTAAAAAACTCTAA AAATTAAAGTTACTTATTTTTACAACATAAAATAGAAATAAGTAACTTTTAAGAAAAAAAAGTTATGGAGATGAGCTTTT TACTTATAAGCAACTTATCTTTCCTACGTCTTATTCTGTTCGTGATTCATCTTCTTCTTCGTTCTAGAAAAAGGAAGGTC ACCTTCTTAGAATAGATTGCGACAACGCTGAAGTCGCCCACTCGCCCATGTCTACTCGAGATGAAGCCATCATCTTCTCA AGGATTAGCGATCTTCTCCTTGTCCTAGGTTGAGGAAAGCACATGGGCATCAAAAGTGCTCTGCCTCTGCAATCTTAGAG AGGAGATCAGGTTCCCTCCAAATATGGCTTCCAGATCAGAATCTAATATCTCTGTTGATGGAGCTAATAGCCATGAAGCA AATTAAAGAGATTGAGTTTTCTGCTTATTTTGACAAAAACTATTTCTGCTTATTCTCTATCAATCCTTGGTGTCAATTAC ATTTTATGGGGTTTTATGGATTTTACATTCTGTTGCGTTTTGTGTTTTTATGGGTTTTGTAGTCTCACCATATGATAAAA TGTTTCAACCACTTGTGTTTTGAAGTGGGCTATAAGCTCGGGGACTAAACTCTTGGATGGATTCCATGTACGGTTTGGGT GACGACTGCAAAACTGGGAAGTGGTGTGATGTTGCTTCCCTTTATGCAGTCCAATTCATATCAGCTTTGACAGACTAGAG ATAGGAATAAGTGCGGCGGTGGGGGAATTCATTTAATTTTGGCTTCATCATCCGGATATATTCTGGCTTGAAATCATCCT CCAAGCAAACACCACCTCGCAACAAAGATTTCTTCACTGGAAGTGTTGTATGAACAGTACTCCTATGGAAATGAAGATGC TTTGTGCATATGCCTTGTTATTAGTTTTATTAAAAAACAATTCCTTAAAACAAGACAAATATGTTGAACATGGCTGGTCG GGTTTGTTTGGTGAAGTCTGTGATTTCAGTTATCCCCACATACTGCATGCAAGCATTTTGGCTTCCTAGAGGGCTCTTAA ATCAGATCAACAAGACCATGAGATCGTTCATTTGGTCGAAGGGCTCAGGTAGACCAGGTTGGCATTTGATTGGTTGGAAC AAACTGGTTGATCACAAGGAGAGAGGCGGTTTGGGTGTTCGGGACATGGCAATAGCAAACACAACGTTGTTAGGTAAAGC TGTGTGGAGTATCATGCATCACCCTCACAAACTCTGGGTCCAGGCTCTTGCTAACAAATATTTGACAGCATCCTCAATTT TACATGCCCCTCACCGTACCTCCGACTCACTTGTTTGGAGAGGTATTCTTAGGGCAAGAGACAAAATTCATAATGGCTTT CGGTTTCGTCTTGGGAGCGGCGACACATCCGTTTGGTATGCGGATTGGAGCGGGTTAGGTGCCCTAGCCCACCAGCTTCC TTTCGTTAATATTGCAGACACCAGGTTGAGTCTTCGAGACCTGATTCAAGGCAACCAGTGGAATTTTCAACGGGCCTATA CGGAGATGCCTCCCATCTTCAGAGATAAATTGAACCTGATTGCTCCAGTGCTTCAAGGGGGGAGATCTGACCTATGGATT TGGGATGGAAATCCGACAGGGTGCTACACCACTAGGGACGCATATGCCTGGCTCCATGCCCAGGATCATCCGCAGGCCCC AACAGGGATGTGGAACTGGATTTGGAAGCTTGCAGTCCCTGAGAAATTGCGTTTTTTTATCTGGATTATCTGTCATGAAT CTTTGCAGGTTAATACGTATCGTTTCAGATGCAATTTGAGCCAAGACTCGCGGTGCACCCGATGCTCAGGAGGGGAAGAA ACGATCCTTCATTGCATGAGGGATTGCCCTCATTCGAGGGAAATCTGGCTTCGTTTGGGAATCCTGTCCAGAGATGATTT TCTGCAGCAAGATCCCAGAAGATGGGTCACTAATCTAGCTCGAAGCAGCATCAGAGTTCAATTTGTGGTGGTGTTGTGGG GCATTTGGAGATGGAGAAACAACATGTTGTTTGAACCTTCTCCTTGGACACTGCAGGAGGCTTGGCGTCGCATCTGCCAT GACTATGATGAAATTATCCATTTCCAGGATCCCCTCAATGTTGAGAACGGGAACCAACATATGAGTGATAGTTGGAAGCC TCCGCCAGCGGGAACGGTGAAACTGAACGTTGATGGAAGCTTTGGTGGAGAACCTCGTCGCATGGGTGGCGGTGGTGTGT TCCGTGACAGCAAGGGAACATGGATGGGTGGCTTCATCTCCTTTGAAACCGGCGGTAACCCGCTCCTGGCGGAAGCTACG GCGCTCCGTGATGGATTGGAGTGTGGGTGGCAGCGGGGCTTCAGGAACCTCATATGCGAGGTTGATTGTCAAGAGTTGAT CTCATCCCTTGGCGACCAAGAGAGGACCCGGTTCATGCCAGTGCTTCAGGACATCAACAATTGGCTTCTTAGAGATTGGA TTGTGGTGCTGCAACCTGTTAACAGGATTGCCAACAGGGTGGCAGACCGTCTGGCTCGTTTGGGTGCGGAAAGTTTGCAA CCTGGTGTCCATGTATGGGACAATCCTCAGCTGGAGATTATGACTCTTATGCTGAGTGATTATGCTTTTATTCCTTAACC CTTTTGTAGTTTTTCCAATGCAGC
CDS sequence (LotjaGi1g1v0630700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAACATGGCTGGTCGGGTTTGTTTGGTGAAGTCTGTGATTTCAGTTATCCCCACATACTGCATGCAAGCATTTTG GCTTCCTAGAGGGCTCTTAAATCAGATCAACAAGACCATGAGATCGTTCATTTGGTCGAAGGGCTCAGGTAGACCAGGTT GGCATTTGATTGGTTGGAACAAACTGGTTGATCACAAGGAGAGAGGCGGTTTGGGTGTTCGGGACATGGCAATAGCAAAC ACAACGTTGTTAGGTAAAGCTGTGTGGAGTATCATGCATCACCCTCACAAACTCTGGGTCCAGGCTCTTGCTAACAAATA TTTGACAGCATCCTCAATTTTACATGCCCCTCACCGTACCTCCGACTCACTTGTTTGGAGAGGTATTCTTAGGGCAAGAG ACAAAATTCATAATGGCTTTCGGTTTCGTCTTGGGAGCGGCGACACATCCGTTTGGTATGCGGATTGGAGCGGGTTAGGT GCCCTAGCCCACCAGCTTCCTTTCGTTAATATTGCAGACACCAGGTTGAGTCTTCGAGACCTGATTCAAGGCAACCAGTG GAATTTTCAACGGGCCTATACGGAGATGCCTCCCATCTTCAGAGATAAATTGAACCTGATTGCTCCAGTGCTTCAAGGGG GGAGATCTGACCTATGGATTTGGGATGGAAATCCGACAGGGTGCTACACCACTAGGGACGCATATGCCTGGCTCCATGCC CAGGATCATCCGCAGGCCCCAACAGGGATGTGGAACTGGATTTGGAAGCTTGCAGTCCCTGAGAAATTGCGTTTTTTTAT CTGGATTATCTGTCATGAATCTTTGCAGGTTAATACGTATCGTTTCAGATGCAATTTGAGCCAAGACTCGCGGTGCACCC GATGCTCAGGAGGGGAAGAAACGATCCTTCATTGCATGAGGGATTGCCCTCATTCGAGGGAAATCTGGCTTCGTTTGGGA ATCCTGTCCAGAGATGATTTTCTGCAGCAAGATCCCAGAAGATGGGTCACTAATCTAGCTCGAAGCAGCATCAGAGTTCA ATTTGTGGTGGTGTTGTGGGGCATTTGGAGATGGAGAAACAACATGTTGTTTGAACCTTCTCCTTGGACACTGCAGGAGG CTTGGCGTCGCATCTGCCATGACTATGATGAAATTATCCATTTCCAGGATCCCCTCAATGTTGAGAACGGGAACCAACAT ATGAGTGATAGTTGGAAGCCTCCGCCAGCGGGAACGGTGAAACTGAACGTTGATGGAAGCTTTGGTGGAGAACCTCGTCG CATGGGTGGCGGTGGTGTGTTCCGTGACAGCAAGGGAACATGGATGGGTGGCTTCATCTCCTTTGAAACCGGCGGTAACC CGCTCCTGGCGGAAGCTACGGCGCTCCGTGATGGATTGGAGTGTGGGTGGCAGCGGGGCTTCAGGAACCTCATATGCGAG GTTGATTGTCAAGAGTTGATCTCATCCCTTGGCGACCAAGAGAGGACCCGGTTCATGCCAGTGCTTCAGGACATCAACAA TTGGCTTCTTAGAGATTGGATTGTGGTGCTGCAACCTGTTAACAGGATTGCCAACAGGGTGGCAGACCGTCTGGCTCGTT TGGGTGCGGAAAGTTTGCAACCTGGTGTCCATGTATGGGACAATCCTCAGCTGGAGATTATGACTCTTATGCTGAGTGAT TATGCTTTTATTCCTTAA
Protein sequence (LotjaGi1g1v0630700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNMAGRVCLVKSVISVIPTYCMQAFWLPRGLLNQINKTMRSFIWSKGSGRPGWHLIGWNKLVDHKERGGLGVRDMAIAN TTLLGKAVWSIMHHPHKLWVQALANKYLTASSILHAPHRTSDSLVWRGILRARDKIHNGFRFRLGSGDTSVWYADWSGLG ALAHQLPFVNIADTRLSLRDLIQGNQWNFQRAYTEMPPIFRDKLNLIAPVLQGGRSDLWIWDGNPTGCYTTRDAYAWLHA QDHPQAPTGMWNWIWKLAVPEKLRFFIWIICHESLQVNTYRFRCNLSQDSRCTRCSGGEETILHCMRDCPHSREIWLRLG ILSRDDFLQQDPRRWVTNLARSSIRVQFVVVLWGIWRWRNNMLFEPSPWTLQEAWRRICHDYDEIIHFQDPLNVENGNQH MSDSWKPPPAGTVKLNVDGSFGGEPRRMGGGGVFRDSKGTWMGGFISFETGGNPLLAEATALRDGLECGWQRGFRNLICE VDCQELISSLGDQERTRFMPVLQDINNWLLRDWIVVLQPVNRIANRVADRLARLGAESLQPGVHVWDNPQLEIMTLMLSD YAFIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 554 | 548 | 2.4E-93 | – | |
| Pfam | 229 | 316 | 88 | 1.3E-16 | ||
| Gene3D | 410 | 538 | 129 | 1.9E-13 | ||
| SUPERFAMILY | 412 | 539 | 128 | 3.92E-13 | ||
| CDD | 415 | 533 | 119 | 4.76963E-32 | – | |
| Pfam | 416 | 534 | 119 | 1.7E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0630700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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