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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0631600 |
| Transcript ID | LotjaGi1g1v0631600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase subunit C; TAIR: AT1G12840.1 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3); Swiss-Prot: sp|Q9SDS7|VATC_ARATH V-type proton ATPase subunit C; TrEMBL-Plants: tr|A0A0B2R9D5|A0A0B2R9D5_GLYSO V-type proton ATPase subunit C; Found in the gene: LotjaGi1g1v0631600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118550888..118553956) extracted from Lotus japonicus Gifu genome v1.2.
AGAACCAGAAGGATCACTTTGACAATGGCAAGCAGATACTGGGTAGTCTCTCTTCCCGTTCACAACTCTGCATCTGAGTT ATGGAACCAGTTGCAGCAAAATGTCTCTAAGCATTCCTTCGATACCCCTCTTTACAGAGTAACTAACTACCTCTTCTTCT TCATCTTCTTCAATTCACTCCTTCATTCATTGATTCACAATTTGACATTGATCTTCTTCGCAGTTCAACATCCCCAATCT CCGCGTCGGAACCCTAGACTCTCTCCTCTCTCTCAGCGATGATCTCGCCAAGGTAAATCCCCGTTTTCCCCTTCTCGATT TCTTCTGTATCCTACCGATTCGTTGAAATCAGATCGTTGAGGATTTGTGCAGTCCAACAATTTCGTGGAGGGAGTATCAC ACAAGATCAGGCGCCAGATTGAGGAGCTCGAGAGAGTTTCCGCTGTAGAAACCACTGCCCTCACCGTCGATGGCGTGCCT GTTGATTCCTACCTAACTAGGTCCGTTTTCAATTCGATTCAATTGCTTGATCTCTTGCTGTTTTGTTCAGAGATGGGTTT ATTTTTGTTGTTTGGGGTTAAATTTTTGTGTTTTGTGATGGATCCAGGTTTGTTTGGGATGAAGGCAAGTACCCCACCAT GTCTCCTTTGAAGGAGATTGTTGATGGTATTCATGGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTTTTGTTTCCT TTCCACCCTTGAATCTTAGTTAGATTTAGGAGGTGTGGAGTTAGTTAGTGTTGATCATAGTATAAGTCTTTGTCATCCAT GGCCTGTGTAGTGATCAATCATTGCTTTATAGTGATATAGCAGCAGTCTTCTGCATACTTTTAATTAAGTGACGCAGAGT TGATTACTCAGTTTGTGGAGTCTTTTTAGTTACTATTTAGTTTATTTTTGGGTTTTGGGGAGGAGAAGAATGAGGCCAGT CGGAGATTATAAGAACTAAGAATAAAAGTGTTTCCCTCAATGGAAAAAAATCTAACCCACTGAATTTATTATATTAAAGT TTCGCAAATTTTAGGTCACCTGCAACGGTTCCTTGCCGGTTTCAGTTACTAGCATGAGGGTGACTTGATTGTTATATAAG AAAGACCACGGTTTCAGTTTGCTTCCTATTTATTTTTCTTTTTTACCTACAGTTCTTCGCTTGCTGCTCTCCCCCCTTTG TGTCTCCTTTCTTCACTAAAAGATCAAAAGATCTTTTTTTGCGGCCAAAAGAGGGGGGGGGGGGGTTGTTAAAAGATCTT ATGTGTGATTTCAGAAAGGTCTTGCAAGTTAAAATGGTTTCCGCTTAGCCCTGATTCCAAGTTTTTCTCTTTTCTGAGCA ATATAGTAAAGAATAACATCTCTACTTTTTTGGCATGATATGGATTGAATTTTCTGTTTGACCCTTGAAACTTTTTCTTT CACTCCAGGTCCGTGTTTCTGAGTACAATAATATCCGCAGTCAGCTTAATGCTATCAATAGGAAGCAAACTGGAAGGTAA GGATGTTGTTTTCTGACTTAGATAGTTTTCAAATACATTCTAATTCTTATCTTACCTACTTGACTACTTCAGCTTAGCAG TCCGTGATCTTTCCAACTTGGTAAAACCCGAGGACATTATCACCTCAGAACATTTAACTACCCTTCTTGCAATTGTTTCC AAGTATTCGCAGAAGGATTGGCTCGCAAGCTATGAAACGTTGACAGACTATGTGGTAAGAGACATCATATTGACTCATGA ATTGAATTTCTTATACTACTTCCCTGGGATTTTGTATAATTGAAAACTCCCTGAAACTCATCTAAACAGTCCAATAGTGT CTTCAGTTCTTCACACCATTGAATAATGTTTCAGGTCCCCAGGTCTTCTAAGAAGCTGTATGAGGATAACGAATATGCTC TTTATACTGTGACGCTCTTCAGTCGTGTTGCGGACAATTTTAGAAACAGTGCTCGGGAAAAAGGGATCCAAGTGAGTATT TTCCCCCATTTGATTTCGCATACACAGTCTTCAAAATCTATTAATGCATGTAATATTCACATTCTTCGTAGGATTTTAAT CTTGGAATTTTTTAACAGAAAGTTATGGATTGAAAGATGTACGACAGCACGAGACACCTAATGCTAAGTTGTTAAGTAAC AGATTAATGCTTTCACTAAAGGGGATTAATGGAATTTTATGTCGTTGTATTCAGGTTCGTGATTTTGAATACAGTCCAGA AACACATGAGAATCGAAAGCAGGAGATAGATAAGTTGGTGCAAGATCAGGAAAGTTTGAGGGGTTCTCTGTTGCAATGGT GCTACACCAGTTATGGAGAGGTATTGTACATTTATTAAGTCATTTAATTTACAGAAACACCCAAGAATATTGCGAGAACA AGCATGTTGAGTTAAATGACTGTTTTCAAGCTGGATTTCATATATCTTGCTGTGTGGGTTTTAGTCTCTCATTCTGTGAG ATTGACACTGCAGTATTCTTTAGTTTTCTCTGTTCTGTTCAAATTAGTAGTGCTTAGTGTCCTTAAATTTCTACTTTTCC CACTTCAATTTATTTTTGCCATGTTATCCTAAAATTCCACGGTTCTTCTCGCTCACTACTTTAATTTTATATCTTCTGAA GGTATTCACCTCCTGGATGCACTTTTGTGCTGTACGTTTATTTGCTGAGAGCATTTTGAGATATGGTCTGCCACCGTCGT TCTTGGTAATACTCTTTATAAACCAAAGTTCAGTCTCCTCCCCCGCCCTTTTTCTCAAATATTTGTCACTGACGGTCTTG TACTGATTCCAGGCATGCGTTTTAGCTCCAACTGTAAAAGCCGAGAAGAAAGTACGTTCTATCCTTGAAGGTTTGAGTGA TAGCAGAAACAGGCAAGTAGCTTCTTTATGCCTATGTTGTCTGGTTTAAAATAGACTGCTTCTAGTAATTTTACACACTG CCAAGGCTGATTTACATGCAATCACAAAGCTTATGAATTCAAGATCTGACATACTTTTTTTTGGGGGGTATTCGTGCTGG ATATAAACAAAAACATATCAAGTTTGTGA
CDS sequence (LotjaGi1g1v0631600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGCAGATACTGGGTAGTCTCTCTTCCCGTTCACAACTCTGCATCTGAGTTATGGAACCAGTTGCAGCAAAATGT CTCTAAGCATTCCTTCGATACCCCTCTTTACAGATTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCT CTCTCAGCGATGATCTCGCCAAGTCCAACAATTTCGTGGAGGGAGTATCACACAAGATCAGGCGCCAGATTGAGGAGCTC GAGAGAGTTTCCGCTGTAGAAACCACTGCCCTCACCGTCGATGGCGTGCCTGTTGATTCCTACCTAACTAGGTTTGTTTG GGATGAAGGCAAGTACCCCACCATGTCTCCTTTGAAGGAGATTGTTGATGGTATTCATGGTCAAGTGGCAAAGATTGAGG ATGATCTCAAGGTCCGTGTTTCTGAGTACAATAATATCCGCAGTCAGCTTAATGCTATCAATAGGAAGCAAACTGGAAGC TTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCCGAGGACATTATCACCTCAGAACATTTAACTACCCTTCTTGCAAT TGTTTCCAAGTATTCGCAGAAGGATTGGCTCGCAAGCTATGAAACGTTGACAGACTATGTGGTCCCCAGGTCTTCTAAGA AGCTGTATGAGGATAACGAATATGCTCTTTATACTGTGACGCTCTTCAGTCGTGTTGCGGACAATTTTAGAAACAGTGCT CGGGAAAAAGGGATCCAAGTTCGTGATTTTGAATACAGTCCAGAAACACATGAGAATCGAAAGCAGGAGATAGATAAGTT GGTGCAAGATCAGGAAAGTTTGAGGGGTTCTCTGTTGCAATGGTGCTACACCAGTTATGGAGAGGTATTCACCTCCTGGA TGCACTTTTGTGCTGTACGTTTATTTGCTGAGAGCATTTTGAGATATGGTCTGCCACCGTCGTTCTTGGCATGCGTTTTA GCTCCAACTGTAAAAGCCGAGAAGAAAGTACGTTCTATCCTTGAAGGTTTGAGTGATAGCAGAAACAGGCTGATTTACAT GCAATCACAAAGCTTATGA
Protein sequence (LotjaGi1g1v0631600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRYWVVSLPVHNSASELWNQLQQNVSKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVSHKIRRQIEEL ERVSAVETTALTVDGVPVDSYLTRFVWDEGKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGS LAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLASYETLTDYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRNSA REKGIQVRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESILRYGLPPSFLACVL APTVKAEKKVRSILEGLSDSRNRLIYMQSQSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 340 | 340 | 2.9E-194 | – | |
| PANTHER | 1 | 340 | 340 | 2.9E-194 | ||
| SUPERFAMILY | 2 | 346 | 345 | 3.01E-128 | ||
| Gene3D | 5 | 334 | 330 | 1.4E-82 | – | |
| CDD | 5 | 337 | 333 | 7.23556E-148 | ||
| Pfam | 5 | 336 | 332 | 7.9E-125 | ||
| Gene3D | 41 | 312 | 272 | 1.4E-82 | – | |
| Gene3D | 163 | 251 | 89 | 1.4E-82 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting V-type ATPase, V1 domain | A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0631600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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