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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0631600 |
Transcript ID | LotjaGi1g1v0631600.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | V-type proton ATPase subunit C; TAIR: AT1G12840.1 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3); Swiss-Prot: sp|Q9SDS7|VATC_ARATH V-type proton ATPase subunit C; TrEMBL-Plants: tr|A0A0B2R9D5|A0A0B2R9D5_GLYSO V-type proton ATPase subunit C; Found in the gene: LotjaGi1g1v0631600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:118550912..118553956) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAAGCAGATACTGGGTAGTCTCTCTTCCCGTTCACAACTCTGCATCTGAGTTATGGAACCAGTTGCAGCAAAATGT CTCTAAGCATTCCTTCGATACCCCTCTTTACAGAGTAACTAACTACCTCTTCTTCTTCATCTTCTTCAATTCACTCCTTC ATTCATTGATTCACAATTTGACATTGATCTTCTTCGCAGTTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCTCT CCTCTCTCTCAGCGATGATCTCGCCAAGGTAAATCCCCGTTTTCCCCTTCTCGATTTCTTCTGTATCCTACCGATTCGTT GAAATCAGATCGTTGAGGATTTGTGCAGTCCAACAATTTCGTGGAGGGAGTATCACACAAGATCAGGCGCCAGATTGAGG AGCTCGAGAGAGTTTCCGCTGTAGAAACCACTGCCCTCACCGTCGATGGCGTGCCTGTTGATTCCTACCTAACTAGGTCC GTTTTCAATTCGATTCAATTGCTTGATCTCTTGCTGTTTTGTTCAGAGATGGGTTTATTTTTGTTGTTTGGGGTTAAATT TTTGTGTTTTGTGATGGATCCAGGTTTGTTTGGGATGAAGGCAAGTACCCCACCATGTCTCCTTTGAAGGAGATTGTTGA TGGTATTCATGGTCAAGTGGCAAAGATTGAGGATGATCTCAAGGTTTTTGTTTCCTTTCCACCCTTGAATCTTAGTTAGA TTTAGGAGGTGTGGAGTTAGTTAGTGTTGATCATAGTATAAGTCTTTGTCATCCATGGCCTGTGTAGTGATCAATCATTG CTTTATAGTGATATAGCAGCAGTCTTCTGCATACTTTTAATTAAGTGACGCAGAGTTGATTACTCAGTTTGTGGAGTCTT TTTAGTTACTATTTAGTTTATTTTTGGGTTTTGGGGAGGAGAAGAATGAGGCCAGTCGGAGATTATAAGAACTAAGAATA AAAGTGTTTCCCTCAATGGAAAAAAATCTAACCCACTGAATTTATTATATTAAAGTTTCGCAAATTTTAGGTCACCTGCA ACGGTTCCTTGCCGGTTTCAGTTACTAGCATGAGGGTGACTTGATTGTTATATAAGAAAGACCACGGTTTCAGTTTGCTT CCTATTTATTTTTCTTTTTTACCTACAGTTCTTCGCTTGCTGCTCTCCCCCCTTTGTGTCTCCTTTCTTCACTAAAAGAT CAAAAGATCTTTTTTTGCGGCCAAAAGAGGGGGGGGGGGGGTTGTTAAAAGATCTTATGTGTGATTTCAGAAAGGTCTTG CAAGTTAAAATGGTTTCCGCTTAGCCCTGATTCCAAGTTTTTCTCTTTTCTGAGCAATATAGTAAAGAATAACATCTCTA CTTTTTTGGCATGATATGGATTGAATTTTCTGTTTGACCCTTGAAACTTTTTCTTTCACTCCAGGTCCGTGTTTCTGAGT ACAATAATATCCGCAGTCAGCTTAATGCTATCAATAGGAAGCAAACTGGAAGGTAAGGATGTTGTTTTCTGACTTAGATA GTTTTCAAATACATTCTAATTCTTATCTTACCTACTTGACTACTTCAGCTTAGCAGTCCGTGATCTTTCCAACTTGGTAA AACCCGAGGACATTATCACCTCAGAACATTTAACTACCCTTCTTGCAATTGTTTCCAAGTATTCGCAGAAGGATTGGCTC GCAAGCTATGAAACGTTGACAGACTATGTGGTAAGAGACATCATATTGACTCATGAATTGAATTTCTTATACTACTTCCC TGGGATTTTGTATAATTGAAAACTCCCTGAAACTCATCTAAACAGTCCAATAGTGTCTTCAGTTCTTCACACCATTGAAT AATGTTTCAGGTCCCCAGGTCTTCTAAGAAGCTGTATGAGGATAACGAATATGCTCTTTATACTGTGACGCTCTTCAGTC GTGTTGCGGACAATTTTAGAAACAGTGCTCGGGAAAAAGGGATCCAAGTGAGTATTTTCCCCCATTTGATTTCGCATACA CAGTCTTCAAAATCTATTAATGCATGTAATATTCACATTCTTCGTAGGATTTTAATCTTGGAATTTTTTAACAGAAAGTT ATGGATTGAAAGATGTACGACAGCACGAGACACCTAATGCTAAGTTGTTAAGTAACAGATTAATGCTTTCACTAAAGGGG ATTAATGGAATTTTATGTCGTTGTATTCAGGTTCGTGATTTTGAATACAGTCCAGAAACACATGAGAATCGAAAGCAGGA GATAGATAAGTTGGTGCAAGATCAGGAAAGTTTGAGGGGTTCTCTGTTGCAATGGTGCTACACCAGTTATGGAGAGGTAT TGTACATTTATTAAGTCATTTAATTTACAGAAACACCCAAGAATATTGCGAGAACAAGCATGTTGAGTTAAATGACTGTT TTCAAGCTGGATTTCATATATCTTGCTGTGTGGGTTTTAGTCTCTCATTCTGTGAGATTGACACTGCAGTATTCTTTAGT TTTCTCTGTTCTGTTCAAATTAGTAGTGCTTAGTGTCCTTAAATTTCTACTTTTCCCACTTCAATTTATTTTTGCCATGT TATCCTAAAATTCCACGGTTCTTCTCGCTCACTACTTTAATTTTATATCTTCTGAAGGTATTCACCTCCTGGATGCACTT TTGTGCTGTACGTTTATTTGCTGAGAGCATTTTGAGATATGGTCTGCCACCGTCGTTCTTGGTAATACTCTTTATAAACC AAAGTTCAGTCTCCTCCCCCGCCCTTTTTCTCAAATATTTGTCACTGACGGTCTTGTACTGATTCCAGGCATGCGTTTTA GCTCCAACTGTAAAAGCCGAGAAGAAAGTACGTTCTATCCTTGAAGGTTTGAGTGATAGCAGAAACAGGCAAGTAGCTTC TTTATGCCTATGTTGTCTGGTTTAAAATAGACTGCTTCTAGTAATTTTACACACTGCCAAGGCTGATTTACATGCAATCA CAAAGCTTATGAATTCAAGATCTGACATACTTTTTTTTGGGGGGTATTCGTGCTGGATATAAACAAAAACATATCAAGTT TGTGA
CDS sequence (LotjaGi1g1v0631600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGCAGATACTGGGTAGTCTCTCTTCCCGTTCACAACTCTGCATCTGAGTTATGGAACCAGTTGCAGCAAAATGT CTCTAAGCATTCCTTCGATACCCCTCTTTACAGATTCAACATCCCCAATCTCCGCGTCGGAACCCTAGACTCTCTCCTCT CTCTCAGCGATGATCTCGCCAAGTCCAACAATTTCGTGGAGGGAGTATCACACAAGATCAGGCGCCAGATTGAGGAGCTC GAGAGAGTTTCCGCTGTAGAAACCACTGCCCTCACCGTCGATGGCGTGCCTGTTGATTCCTACCTAACTAGGTTTGTTTG GGATGAAGGCAAGTACCCCACCATGTCTCCTTTGAAGGAGATTGTTGATGGTATTCATGGTCAAGTGGCAAAGATTGAGG ATGATCTCAAGGTCCGTGTTTCTGAGTACAATAATATCCGCAGTCAGCTTAATGCTATCAATAGGAAGCAAACTGGAAGC TTAGCAGTCCGTGATCTTTCCAACTTGGTAAAACCCGAGGACATTATCACCTCAGAACATTTAACTACCCTTCTTGCAAT TGTTTCCAAGTATTCGCAGAAGGATTGGCTCGCAAGCTATGAAACGTTGACAGACTATGTGGTCCCCAGGTCTTCTAAGA AGCTGTATGAGGATAACGAATATGCTCTTTATACTGTGACGCTCTTCAGTCGTGTTGCGGACAATTTTAGAAACAGTGCT CGGGAAAAAGGGATCCAAGTTCGTGATTTTGAATACAGTCCAGAAACACATGAGAATCGAAAGCAGGAGATAGATAAGTT GGTGCAAGATCAGGAAAGTTTGAGGGGTTCTCTGTTGCAATGGTGCTACACCAGTTATGGAGAGGTATTCACCTCCTGGA TGCACTTTTGTGCTGTACGTTTATTTGCTGAGAGCATTTTGAGATATGGTCTGCCACCGTCGTTCTTGGCATGCGTTTTA GCTCCAACTGTAAAAGCCGAGAAGAAAGTACGTTCTATCCTTGAAGGTTTGAGTGATAGCAGAAACAGGCAAGTAGCTTC TTTATGCCTATGTTGTCTGGTTTAA
Protein sequence (LotjaGi1g1v0631600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRYWVVSLPVHNSASELWNQLQQNVSKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLAKSNNFVEGVSHKIRRQIEEL ERVSAVETTALTVDGVPVDSYLTRFVWDEGKYPTMSPLKEIVDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGS LAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLASYETLTDYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRNSA REKGIQVRDFEYSPETHENRKQEIDKLVQDQESLRGSLLQWCYTSYGEVFTSWMHFCAVRLFAESILRYGLPPSFLACVL APTVKAEKKVRSILEGLSDSRNRQVASLCLCCLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 338 | 338 | 4.1E-194 | – | |
PANTHER | 1 | 338 | 338 | 4.1E-194 | ||
SUPERFAMILY | 2 | 344 | 343 | 2.75E-128 | ||
Gene3D | 5 | 334 | 330 | 1.5E-82 | – | |
CDD | 5 | 337 | 333 | 1.16582E-148 | ||
Pfam | 5 | 336 | 332 | 7.8E-125 | ||
Gene3D | 41 | 312 | 272 | 1.5E-82 | – | |
Gene3D | 163 | 251 | 89 | 1.5E-82 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
Cellular component | Proton-transporting V-type ATPase, V1 domain | A protein complex that forms part of a proton-transporting V-type ATPase and catalyzes ATP hydrolysis. The V1 complex consists of: (1) a globular headpiece with three alternating copies of subunits A and B that form a ring, (2) a central rotational stalk composed of single copies of subunits D and F, and (3) a peripheral stalk made of subunits C, E, G and H. Subunits A and B mediate the hydrolysis of ATP at three reaction sites associated with subunit A. | ||
Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0631600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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